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Moc08g27710 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g27710
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr8:19987178..19996402
RNA-Seq ExpressionMoc08g27710
SyntenyMoc08g27710
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0000166 - nucleotide binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
GO:0043167 - ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KHN02029.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine soja]1.4e-1258.9Show/hide
Query:  LRLVLIDIYEKPSANSKVYLITRYFNIHMEEGMSVNSHINEVTQLMNQLESMEITCLEEVKAIKLLSSLPDSW
        L   L D+YEKPSA +KVYL+ R+FN+ M EG+SV  HINE   ++ QLES++I   +EVKA+ LLSSLPDSW
Subjt:  LRLVLIDIYEKPSANSKVYLITRYFNIHMEEGMSVNSHINEVTQLMNQLESMEITCLEEVKAIKLLSSLPDSW
KHN08937.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine soja]4.2e-1258.9Show/hide
Query:  LRLVLIDIYEKPSANSKVYLITRYFNIHMEEGMSVNSHINEVTQLMNQLESMEITCLEEVKAIKLLSSLPDSW
        L   L D+YEKPSA +KVYL+ R FN+ M EG+SV  HINE   ++ QLES++I   +EVKA+ LLSSLPDSW
Subjt:  LRLVLIDIYEKPSANSKVYLITRYFNIHMEEGMSVNSHINEVTQLMNQLESMEITCLEEVKAIKLLSSLPDSW
KHN15555.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine soja]2.4e-1258.9Show/hide
Query:  LRLVLIDIYEKPSANSKVYLITRYFNIHMEEGMSVNSHINEVTQLMNQLESMEITCLEEVKAIKLLSSLPDSW
        L   L D+YEKPSA +KVYL+ R FN+ M EG+SV  HINE   ++ QLES++I   +EVKA+ LLSSLPDSW
Subjt:  LRLVLIDIYEKPSANSKVYLITRYFNIHMEEGMSVNSHINEVTQLMNQLESMEITCLEEVKAIKLLSSLPDSW
KHN26496.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine soja]2.4e-1258.9Show/hide
Query:  LRLVLIDIYEKPSANSKVYLITRYFNIHMEEGMSVNSHINEVTQLMNQLESMEITCLEEVKAIKLLSSLPDSW
        L   L D+YEKPSA +KVYL+ R FN+ M EG+SV  HINE   ++ QLES++I   +EVKA+ LLSSLPDSW
Subjt:  LRLVLIDIYEKPSANSKVYLITRYFNIHMEEGMSVNSHINEVTQLMNQLESMEITCLEEVKAIKLLSSLPDSW
KHN28193.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine soja]4.2e-1258.9Show/hide
Query:  LRLVLIDIYEKPSANSKVYLITRYFNIHMEEGMSVNSHINEVTQLMNQLESMEITCLEEVKAIKLLSSLPDSW
        L   L D+YEKPSA +KVYL+ R FN+ M EG+SV  HINE   ++ QLES++I   +EVKA+ LLSSLPDSW
Subjt:  LRLVLIDIYEKPSANSKVYLITRYFNIHMEEGMSVNSHINEVTQLMNQLESMEITCLEEVKAIKLLSSLPDSW
TrEMBL top hitse value%identityAlignment
A0A0B2P383 Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment)6.9e-1358.9Show/hide
Query:  LRLVLIDIYEKPSANSKVYLITRYFNIHMEEGMSVNSHINEVTQLMNQLESMEITCLEEVKAIKLLSSLPDSW
        L   L D+YEKPSA +KVYL+ R+FN+ M EG+SV  HINE   ++ QLES++I   +EVKA+ LLSSLPDSW
Subjt:  LRLVLIDIYEKPSANSKVYLITRYFNIHMEEGMSVNSHINEVTQLMNQLESMEITCLEEVKAIKLLSSLPDSW
A0A0B2Q2J6 Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment)1.2e-1258.9Show/hide
Query:  LRLVLIDIYEKPSANSKVYLITRYFNIHMEEGMSVNSHINEVTQLMNQLESMEITCLEEVKAIKLLSSLPDSW
        L   L D+YEKPSA +KVYL+ R FN+ M EG+SV  HINE   ++ QLES++I   +EVKA+ LLSSLPDSW
Subjt:  LRLVLIDIYEKPSANSKVYLITRYFNIHMEEGMSVNSHINEVTQLMNQLESMEITCLEEVKAIKLLSSLPDSW
A0A0B2QXU5 Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment)1.2e-1258.9Show/hide
Query:  LRLVLIDIYEKPSANSKVYLITRYFNIHMEEGMSVNSHINEVTQLMNQLESMEITCLEEVKAIKLLSSLPDSW
        L   L D+YEKPSA +KVYL+ R FN+ M EG+SV  HINE   ++ QLES++I   +EVKA+ LLSSLPDSW
Subjt:  LRLVLIDIYEKPSANSKVYLITRYFNIHMEEGMSVNSHINEVTQLMNQLESMEITCLEEVKAIKLLSSLPDSW
A0A0B2RZN9 Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment)6.9e-1358.9Show/hide
Query:  LRLVLIDIYEKPSANSKVYLITRYFNIHMEEGMSVNSHINEVTQLMNQLESMEITCLEEVKAIKLLSSLPDSW
        L   L D+YEKPSA +KVYL+ R+FN+ M EG+SV  HINE   ++ QLES++I   +EVKA+ LLSSLPDSW
Subjt:  LRLVLIDIYEKPSANSKVYLITRYFNIHMEEGMSVNSHINEVTQLMNQLESMEITCLEEVKAIKLLSSLPDSW
A0A0D3AEM1 CCHC-type domain-containing protein6.9e-1356.58Show/hide
Query:  LRLVLIDIYEKPSANSKVYLITRYFNIHMEEGMSVNSHINEVTQLMNQLESMEITCLEEVKAIKLLSSLPDSWEMM
        L  VL D+YEKPSANSKV+L+ + F++ MEEG  V +HINE   ++NQL S+EI   +EV+A+ LL+SLP+SWE M
Subjt:  LRLVLIDIYEKPSANSKVYLITRYFNIHMEEGMSVNSHINEVTQLMNQLESMEITCLEEVKAIKLLSSLPDSWEMM
SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-946.7e-0529.66Show/hide
Query:  EESSSSFSKEPLDDMSEEIDGAEKIDEGERKGTWLVVQRGQPVLLRLVLIDIYEKPSANSKVYLITRYFNIHMEEGMSVNSHINEVTQLMNQLESMEITC
        E ++S+      DD+   I     IDE   +G W  ++             +Y   +  +K+YL  + + +HM EG +  SH+N    L+ QL ++ +  
Subjt:  EESSSSFSKEPLDDMSEEIDGAEKIDEGERKGTWLVVQRGQPVLLRLVLIDIYEKPSANSKVYLITRYFNIHMEEGMSVNSHINEVTQLMNQLESMEITC

Query:  LEEVKAIKLLSSLPDSWE
         EE KAI LL+SLP S++
Subjt:  LEEVKAIKLLSSLPDSWE
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGGCTCATCCTTCTCCAAACCGTGCAACAAAGAGAAGCGGAAGAAGAAGAAGGTCAAAAATAGGTTAGTGGTGATTCTGAGCATGACACAGAGCCATTGGAGCAC
TCGGATTCGGCCACAGTCGAAATCCACTGCCAAATTGCACCTGGAGAAGATGACGTCGAAAATTGTCGAAATTTTGGTGGCCTTGAATGAAGCAAAGGGAGAAGATCTAT
TAGAGGATGATGAAAATAGTGGGGAAGCTCAAGGAAGACTGAACTTTGACGGAGAGGATGAAGAATCCGGTCCTGTGGATGTCCCAAATGAGGCCATTGAGGAATCATCA
TCCTCTTTTTCAAAAGAACCTCTTGACGATATGAGTGAAGAAATTGATGGAGCAGAAAAAATTGATGAAGGCGAGAGAAAGGGAACTTGGCTTGTAGTGCAACGTGGGCA
GCCCGTTCTCTTGAGACTAGTGCTGATAGACATATATGAAAAACCTTCTGCCAATAGCAAGGTGTATCTCATCACGAGATATTTTAACATTCACATGGAGGAAGGCATGT
CGGTGAACTCCCACATCAATGAGGTCACTCAACTGATGAACCAGTTGGAGTCGATGGAGATCACTTGCTTAGAGGAGGTGAAGGCTATAAAGCTATTGTCTTCTTTGCCT
GACAGTTGGGAAATGATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGGCTCATCCTTCTCCAAACCGTGCAACAAAGAGAAGCGGAAGAAGAAGAAGGTCAAAAATAGGTTAGTGGTGATTCTGAGCATGACACAGAGCCATTGGAGCAC
TCGGATTCGGCCACAGTCGAAATCCACTGCCAAATTGCACCTGGAGAAGATGACGTCGAAAATTGTCGAAATTTTGGTGGCCTTGAATGAAGCAAAGGGAGAAGATCTAT
TAGAGGATGATGAAAATAGTGGGGAAGCTCAAGGAAGACTGAACTTTGACGGAGAGGATGAAGAATCCGGTCCTGTGGATGTCCCAAATGAGGCCATTGAGGAATCATCA
TCCTCTTTTTCAAAAGAACCTCTTGACGATATGAGTGAAGAAATTGATGGAGCAGAAAAAATTGATGAAGGCGAGAGAAAGGGAACTTGGCTTGTAGTGCAACGTGGGCA
GCCCGTTCTCTTGAGACTAGTGCTGATAGACATATATGAAAAACCTTCTGCCAATAGCAAGGTGTATCTCATCACGAGATATTTTAACATTCACATGGAGGAAGGCATGT
CGGTGAACTCCCACATCAATGAGGTCACTCAACTGATGAACCAGTTGGAGTCGATGGAGATCACTTGCTTAGAGGAGGTGAAGGCTATAAAGCTATTGTCTTCTTTGCCT
GACAGTTGGGAAATGATGTAG
Protein sequenceShow/hide protein sequence
MEGSSFSKPCNKEKRKKKKVKNRLVVILSMTQSHWSTRIRPQSKSTAKLHLEKMTSKIVEILVALNEAKGEDLLEDDENSGEAQGRLNFDGEDEESGPVDVPNEAIEESS
SSFSKEPLDDMSEEIDGAEKIDEGERKGTWLVVQRGQPVLLRLVLIDIYEKPSANSKVYLITRYFNIHMEEGMSVNSHINEVTQLMNQLESMEITCLEEVKAIKLLSSLP
DSWEMM