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Moc08g27740 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g27740
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy1-copia retrotransposon protein
Genome locationchr8:20016046..20016602
RNA-Seq ExpressionMoc08g27740
SyntenyMoc08g27740
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036921.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]4.0e-2445.03Show/hide
Query:  ETDDIIATVVVEANLVENKSDWILDTGASRHFYPNRDLFHDFQDSAD-----------------------------------------------GALLNQ
        E D  I   +VEANL+ENK+DWILDTGASRHF  NR+L HD++D+AD                                               G+LLN+
Subjt:  ETDDIIATVVVEANLVENKSDWILDTGASRHFYPNRDLFHDFQDSAD-----------------------------------------------GALLNQ

Query:  AGLRIVFEVDKDIITKNGDFVGKGYLADDLFVLNITSSNEINSSSTYIVQS
        AGL+IV E DK ++TKNGDFVGKGYL++ LFVLN  S N   SSSTY+++S
Subjt:  AGLRIVFEVDKDIITKNGDFVGKGYLADDLFVLNITSSNEINSSSTYIVQS

KAA0047579.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]4.8e-2552.89Show/hide
Query:  ETDDIIATVVVEANLVENKSDWILDTGASRHFYPNRDLFHDFQDSAD-----------------GALLNQAGLRIVFEVDKDIITKNGDFVGKGYLADDL
        E D  I   +V+ANL+ENK+DWILDT ASRHF  NR+L HD++D+AD                 G+LLN+ GL+IV E DK ++TKNGDFVGKGYL++ L
Subjt:  ETDDIIATVVVEANLVENKSDWILDTGASRHFYPNRDLFHDFQDSAD-----------------GALLNQAGLRIVFEVDKDIITKNGDFVGKGYLADDL

Query:  FVLNITSSNEINSSSTYIVQS
        FVLN  S N   SSS Y+++S
Subjt:  FVLNITSSNEINSSSTYIVQS

KAA0053505.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]5.3e-2445.03Show/hide
Query:  ETDDIIATVVVEANLVENKSDWILDTGASRHFYPNRDLFHDFQDSAD-----------------------------------------------GALLNQ
        E D  I   +VEANL+ENK+DWILDTGASRHF  NR+L HD++D+AD                                               G+LLN+
Subjt:  ETDDIIATVVVEANLVENKSDWILDTGASRHFYPNRDLFHDFQDSAD-----------------------------------------------GALLNQ

Query:  AGLRIVFEVDKDIITKNGDFVGKGYLADDLFVLNITSSNEINSSSTYIVQS
        AGL+IV E DK + TKNGDFVGKGYL++ LFVLN  S NE  SSS Y+++S
Subjt:  AGLRIVFEVDKDIITKNGDFVGKGYLADDLFVLNITSSNEINSSSTYIVQS

XP_022153695.1 uncharacterized protein LOC111021147 [Momordica charantia]1.7e-3559.09Show/hide
Query:  ETDDIIATVVVEANLVENKSDWILDTGASRHFYPNRDLFHDFQDSADG-----------------------------------------------ALLNQ
        ETDDII TVVVE NLVENKSDWILDTGASRHF  NRDLFHDFQDSADG                                                LLN+
Subjt:  ETDDIIATVVVEANLVENKSDWILDTGASRHFYPNRDLFHDFQDSADG-----------------------------------------------ALLNQ

Query:  AGLRIVFEVDKDIITKNGDFVGKGYLADDLFVLNITSSNEINSSSTYIVQSFDV
        AGLRIVF+ +K IITKNGDFVGKGYLAD  FVLN TSSNEINSSS YIV+S DV
Subjt:  AGLRIVFEVDKDIITKNGDFVGKGYLADDLFVLNITSSNEINSSSTYIVQSFDV

XP_022156810.1 uncharacterized protein LOC111023645 [Momordica charantia]1.2e-3157.14Show/hide
Query:  ETDDIIATVVVEANLVENKSDWILDTGASRHFYPNRDLFHDFQDSAD-----------------------------------------------GALLNQ
        ETDDII  VVVEANLVENKSDWILDTG SRHF  NRDLFHDF DSAD                                               G LLN+
Subjt:  ETDDIIATVVVEANLVENKSDWILDTGASRHFYPNRDLFHDFQDSAD-----------------------------------------------GALLNQ

Query:  AGLRIVFEVDKDIITKNGDFVGKGYLADDLFVLNITSSNEINSSSTYIVQSFDV
        AGLRIVFE DK IITKNG FVGK YL D LFVLN T+SNEINSSS YIV+S DV
Subjt:  AGLRIVFEVDKDIITKNGDFVGKGYLADDLFVLNITSSNEINSSSTYIVQSFDV

TrEMBL top hitse value%identityAlignment
A0A5A7T5R1 Ty1-copia retrotransposon protein2.0e-2445.03Show/hide
Query:  ETDDIIATVVVEANLVENKSDWILDTGASRHFYPNRDLFHDFQDSAD-----------------------------------------------GALLNQ
        E D  I   +VEANL+ENK+DWILDTGASRHF  NR+L HD++D+AD                                               G+LLN+
Subjt:  ETDDIIATVVVEANLVENKSDWILDTGASRHFYPNRDLFHDFQDSAD-----------------------------------------------GALLNQ

Query:  AGLRIVFEVDKDIITKNGDFVGKGYLADDLFVLNITSSNEINSSSTYIVQS
        AGL+IV E DK ++TKNGDFVGKGYL++ LFVLN  S N   SSSTY+++S
Subjt:  AGLRIVFEVDKDIITKNGDFVGKGYLADDLFVLNITSSNEINSSSTYIVQS

A0A5A7U281 Ty1-copia retrotransposon protein2.3e-2552.89Show/hide
Query:  ETDDIIATVVVEANLVENKSDWILDTGASRHFYPNRDLFHDFQDSAD-----------------GALLNQAGLRIVFEVDKDIITKNGDFVGKGYLADDL
        E D  I   +V+ANL+ENK+DWILDT ASRHF  NR+L HD++D+AD                 G+LLN+ GL+IV E DK ++TKNGDFVGKGYL++ L
Subjt:  ETDDIIATVVVEANLVENKSDWILDTGASRHFYPNRDLFHDFQDSAD-----------------GALLNQAGLRIVFEVDKDIITKNGDFVGKGYLADDL

Query:  FVLNITSSNEINSSSTYIVQS
        FVLN  S N   SSS Y+++S
Subjt:  FVLNITSSNEINSSSTYIVQS

A0A5A7UII6 Ty1-copia retrotransposon protein2.6e-2445.03Show/hide
Query:  ETDDIIATVVVEANLVENKSDWILDTGASRHFYPNRDLFHDFQDSAD-----------------------------------------------GALLNQ
        E D  I   +VEANL+ENK+DWILDTGASRHF  NR+L HD++D+AD                                               G+LLN+
Subjt:  ETDDIIATVVVEANLVENKSDWILDTGASRHFYPNRDLFHDFQDSAD-----------------------------------------------GALLNQ

Query:  AGLRIVFEVDKDIITKNGDFVGKGYLADDLFVLNITSSNEINSSSTYIVQS
        AGL+IV E DK + TKNGDFVGKGYL++ LFVLN  S NE  SSS Y+++S
Subjt:  AGLRIVFEVDKDIITKNGDFVGKGYLADDLFVLNITSSNEINSSSTYIVQS

A0A6J1DHJ4 uncharacterized protein LOC1110211478.5e-3659.09Show/hide
Query:  ETDDIIATVVVEANLVENKSDWILDTGASRHFYPNRDLFHDFQDSADG-----------------------------------------------ALLNQ
        ETDDII TVVVE NLVENKSDWILDTGASRHF  NRDLFHDFQDSADG                                                LLN+
Subjt:  ETDDIIATVVVEANLVENKSDWILDTGASRHFYPNRDLFHDFQDSADG-----------------------------------------------ALLNQ

Query:  AGLRIVFEVDKDIITKNGDFVGKGYLADDLFVLNITSSNEINSSSTYIVQSFDV
        AGLRIVF+ +K IITKNGDFVGKGYLAD  FVLN TSSNEINSSS YIV+S DV
Subjt:  AGLRIVFEVDKDIITKNGDFVGKGYLADDLFVLNITSSNEINSSSTYIVQSFDV

A0A6J1DRD8 uncharacterized protein LOC1110236455.7e-3257.14Show/hide
Query:  ETDDIIATVVVEANLVENKSDWILDTGASRHFYPNRDLFHDFQDSAD-----------------------------------------------GALLNQ
        ETDDII  VVVEANLVENKSDWILDTG SRHF  NRDLFHDF DSAD                                               G LLN+
Subjt:  ETDDIIATVVVEANLVENKSDWILDTGASRHFYPNRDLFHDFQDSAD-----------------------------------------------GALLNQ

Query:  AGLRIVFEVDKDIITKNGDFVGKGYLADDLFVLNITSSNEINSSSTYIVQSFDV
        AGLRIVFE DK IITKNG FVGK YL D LFVLN T+SNEINSSS YIV+S DV
Subjt:  AGLRIVFEVDKDIITKNGDFVGKGYLADDLFVLNITSSNEINSSSTYIVQSFDV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGTGGAAAACCCGGAGACGGACGACATCATTGCCACTGTGGTTGTGGAAGCAAATTTGGTAGAGAATAAATCCGACTGGATTCTTGACACAGGAGCGTCTAGACA
TTTCTACCCAAACCGTGACCTCTTCCATGACTTTCAAGACTCCGCTGATGGAGCTCTGTTGAACCAAGCCGGACTTAGGATTGTGTTTGAGGTCGACAAGGATATCATCA
CCAAAAATGGTGATTTTGTTGGTAAGGGCTATTTAGCAGATGATTTGTTTGTTCTCAACATTACTTCTTCAAATGAAATTAATTCTAGTTCTACTTACATTGTTCAGTCT
TTTGATGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGTGGAAAACCCGGAGACGGACGACATCATTGCCACTGTGGTTGTGGAAGCAAATTTGGTAGAGAATAAATCCGACTGGATTCTTGACACAGGAGCGTCTAGACA
TTTCTACCCAAACCGTGACCTCTTCCATGACTTTCAAGACTCCGCTGATGGAGCTCTGTTGAACCAAGCCGGACTTAGGATTGTGTTTGAGGTCGACAAGGATATCATCA
CCAAAAATGGTGATTTTGTTGGTAAGGGCTATTTAGCAGATGATTTGTTTGTTCTCAACATTACTTCTTCAAATGAAATTAATTCTAGTTCTACTTACATTGTTCAGTCT
TTTGATGTGTGA
Protein sequenceShow/hide protein sequence
MSVENPETDDIIATVVVEANLVENKSDWILDTGASRHFYPNRDLFHDFQDSADGALLNQAGLRIVFEVDKDIITKNGDFVGKGYLADDLFVLNITSSNEINSSSTYIVQS
FDV