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Moc08g27850 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g27850
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Genome locationchr8:20111650..20113176
RNA-Seq ExpressionMoc08g27850
SyntenyMoc08g27850
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031826.1 gag/pol protein [Cucumis melo var. makuwa]6.7e-5648Show/hide
Query:  MSSSMIGLLAAKKLNGENYKQWKTNLNTILVIGNL----------------------------------RVYILASISDVLAKKHENMVTVREIMDSLHD
        M+S+ + +LAA KLNG NY  WK  +NT+L+I +L                                  R YILAS+S+VLAKKHE+M+T REIMDSL +
Subjt:  MSSSMIGLLAAKKLNGENYKQWKTNLNTILVIGNL----------------------------------RVYILASISDVLAKKHENMVTVREIMDSLHD

Query:  MFGQPSTQARHNALKFICNARIKEGTS-----------------------------------------FHSNAIMNKIEYDLTTLLNELKTYQFLIRSKR
        MFGQ S Q +H+ALK+I NAR+ EG S                                         F SNA+MNKI Y LTTLLNEL+T++ L++ K 
Subjt:  MFGQPSTQARHNALKFICNARIKEGTS-----------------------------------------FHSNAIMNKIEYDLTTLLNELKTYQFLIRSKR

Query:  LEGEENVATS-KRLHGGSTSGTKSAPSSSGSKTFKKKKKSGKGNGADPTAAARELKAKVTKKGKCFSYNVEGHWKRNYPKYFGEKKKAKEGKYDLLVLET
         +GE NVATS ++ H GSTSGTKS PSSSG+K + KKKK G+GN A+  AA    KAK   KG CF  N EGHWKRN PKY  EKKKAK+GKYDLLVLET
Subjt:  LEGEENVATS-KRLHGGSTSGTKSAPSSSGSKTFKKKKKSGKGNGADPTAAARELKAKVTKKGKCFSYNVEGHWKRNYPKYFGEKKKAKEGKYDLLVLET
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]6.7e-5648Show/hide
Query:  MSSSMIGLLAAKKLNGENYKQWKTNLNTILVIGNL----------------------------------RVYILASISDVLAKKHENMVTVREIMDSLHD
        M+S+ + +LAA KLNG NY  WK  +NT+L+I +L                                  R YILAS+S+VLAKKHE+M+T REIMDSL +
Subjt:  MSSSMIGLLAAKKLNGENYKQWKTNLNTILVIGNL----------------------------------RVYILASISDVLAKKHENMVTVREIMDSLHD

Query:  MFGQPSTQARHNALKFICNARIKEGTS-----------------------------------------FHSNAIMNKIEYDLTTLLNELKTYQFLIRSKR
        MFGQ S Q +H+ALK+I NAR+ EG S                                         F SNA+MNKI Y LTTLLNEL+T++ L++ K 
Subjt:  MFGQPSTQARHNALKFICNARIKEGTS-----------------------------------------FHSNAIMNKIEYDLTTLLNELKTYQFLIRSKR

Query:  LEGEENVATS-KRLHGGSTSGTKSAPSSSGSKTFKKKKKSGKGNGADPTAAARELKAKVTKKGKCFSYNVEGHWKRNYPKYFGEKKKAKEGKYDLLVLET
         +GE NVATS ++ H GSTSGTKS PSSSG+K + KKKK G+GN A+  AA    KAK   KG CF  N EGHWKRN PKY  EKKKAK+GKYDLLVLET
Subjt:  LEGEENVATS-KRLHGGSTSGTKSAPSSSGSKTFKKKKKSGKGNGADPTAAARELKAKVTKKGKCFSYNVEGHWKRNYPKYFGEKKKAKEGKYDLLVLET
KAA0047792.1 gag/pol protein [Cucumis melo var. makuwa]6.7e-5648Show/hide
Query:  MSSSMIGLLAAKKLNGENYKQWKTNLNTILVIGNL----------------------------------RVYILASISDVLAKKHENMVTVREIMDSLHD
        M+S+ + +LAA KLNG NY  WK  +NT+L+I +L                                  R YILAS+S+VLAKKHE+M+T REIMDSL +
Subjt:  MSSSMIGLLAAKKLNGENYKQWKTNLNTILVIGNL----------------------------------RVYILASISDVLAKKHENMVTVREIMDSLHD

Query:  MFGQPSTQARHNALKFICNARIKEGTS-----------------------------------------FHSNAIMNKIEYDLTTLLNELKTYQFLIRSKR
        MFGQ S Q +H+ALK+I NAR+ EG S                                         F SNA+MNKI Y LTTLLNEL+T++ L++ K 
Subjt:  MFGQPSTQARHNALKFICNARIKEGTS-----------------------------------------FHSNAIMNKIEYDLTTLLNELKTYQFLIRSKR

Query:  LEGEENVATS-KRLHGGSTSGTKSAPSSSGSKTFKKKKKSGKGNGADPTAAARELKAKVTKKGKCFSYNVEGHWKRNYPKYFGEKKKAKEGKYDLLVLET
         +GE NVATS ++ H GSTSGTKS PSSSG+K + KKKK G+GN A+  AA    KAK   KG CF  N EGHWKRN PKY  EKKKAK+GKYDLLVLET
Subjt:  LEGEENVATS-KRLHGGSTSGTKSAPSSSGSKTFKKKKKSGKGNGADPTAAARELKAKVTKKGKCFSYNVEGHWKRNYPKYFGEKKKAKEGKYDLLVLET
KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]6.7e-5648Show/hide
Query:  MSSSMIGLLAAKKLNGENYKQWKTNLNTILVIGNL----------------------------------RVYILASISDVLAKKHENMVTVREIMDSLHD
        M+S+ + +LAA KLNG NY  WK  +NT+L+I +L                                  R YILAS+S+VLAKKHE+M+T REIMDSL +
Subjt:  MSSSMIGLLAAKKLNGENYKQWKTNLNTILVIGNL----------------------------------RVYILASISDVLAKKHENMVTVREIMDSLHD

Query:  MFGQPSTQARHNALKFICNARIKEGTS-----------------------------------------FHSNAIMNKIEYDLTTLLNELKTYQFLIRSKR
        MFGQ S Q +H+ALK+I NAR+ EG S                                         F SNA+MNKI Y LTTLLNEL+T++ L++ K 
Subjt:  MFGQPSTQARHNALKFICNARIKEGTS-----------------------------------------FHSNAIMNKIEYDLTTLLNELKTYQFLIRSKR

Query:  LEGEENVATS-KRLHGGSTSGTKSAPSSSGSKTFKKKKKSGKGNGADPTAAARELKAKVTKKGKCFSYNVEGHWKRNYPKYFGEKKKAKEGKYDLLVLET
         +GE NVATS ++ H GSTSGTKS PSSSG+K + KKKK G+GN A+  AA    KAK   KG CF  N EGHWKRN PKY  EKKKAK+GKYDLLVLET
Subjt:  LEGEENVATS-KRLHGGSTSGTKSAPSSSGSKTFKKKKKSGKGNGADPTAAARELKAKVTKKGKCFSYNVEGHWKRNYPKYFGEKKKAKEGKYDLLVLET
KAA0062993.1 gag/pol protein [Cucumis melo var. makuwa]6.7e-5648Show/hide
Query:  MSSSMIGLLAAKKLNGENYKQWKTNLNTILVIGNL----------------------------------RVYILASISDVLAKKHENMVTVREIMDSLHD
        M+S+ + +LAA KLNG NY  WK  +NT+L+I +L                                  R YILAS+S+VLAKKHE+M+T REIMDSL +
Subjt:  MSSSMIGLLAAKKLNGENYKQWKTNLNTILVIGNL----------------------------------RVYILASISDVLAKKHENMVTVREIMDSLHD

Query:  MFGQPSTQARHNALKFICNARIKEGTS-----------------------------------------FHSNAIMNKIEYDLTTLLNELKTYQFLIRSKR
        MFGQ S Q +H+ALK+I NAR+ EG S                                         F SNA+MNKI Y LTTLLNEL+T++ L++ K 
Subjt:  MFGQPSTQARHNALKFICNARIKEGTS-----------------------------------------FHSNAIMNKIEYDLTTLLNELKTYQFLIRSKR

Query:  LEGEENVATS-KRLHGGSTSGTKSAPSSSGSKTFKKKKKSGKGNGADPTAAARELKAKVTKKGKCFSYNVEGHWKRNYPKYFGEKKKAKEGKYDLLVLET
         +GE NVATS ++ H GSTSGTKS PSSSG+K + KKKK G+GN A+  AA    KAK   KG CF  N EGHWKRN PKY  EKKKAK+GKYDLLVLET
Subjt:  LEGEENVATS-KRLHGGSTSGTKSAPSSSGSKTFKKKKKSGKGNGADPTAAARELKAKVTKKGKCFSYNVEGHWKRNYPKYFGEKKKAKEGKYDLLVLET
TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein3.3e-5648Show/hide
Query:  MSSSMIGLLAAKKLNGENYKQWKTNLNTILVIGNL----------------------------------RVYILASISDVLAKKHENMVTVREIMDSLHD
        M+S+ + +LAA KLNG NY  WK  +NT+L+I +L                                  R YILAS+S+VLAKKHE+M+T REIMDSL +
Subjt:  MSSSMIGLLAAKKLNGENYKQWKTNLNTILVIGNL----------------------------------RVYILASISDVLAKKHENMVTVREIMDSLHD

Query:  MFGQPSTQARHNALKFICNARIKEGTS-----------------------------------------FHSNAIMNKIEYDLTTLLNELKTYQFLIRSKR
        MFGQ S Q +H+ALK+I NAR+ EG S                                         F SNA+MNKI Y LTTLLNEL+T++ L++ K 
Subjt:  MFGQPSTQARHNALKFICNARIKEGTS-----------------------------------------FHSNAIMNKIEYDLTTLLNELKTYQFLIRSKR

Query:  LEGEENVATS-KRLHGGSTSGTKSAPSSSGSKTFKKKKKSGKGNGADPTAAARELKAKVTKKGKCFSYNVEGHWKRNYPKYFGEKKKAKEGKYDLLVLET
         +GE NVATS ++ H GSTSGTKS PSSSG+K + KKKK G+GN A+  AA    KAK   KG CF  N EGHWKRN PKY  EKKKAK+GKYDLLVLET
Subjt:  LEGEENVATS-KRLHGGSTSGTKSAPSSSGSKTFKKKKKSGKGNGADPTAAARELKAKVTKKGKCFSYNVEGHWKRNYPKYFGEKKKAKEGKYDLLVLET
A0A5A7TU93 Gag/pol protein3.3e-5648Show/hide
Query:  MSSSMIGLLAAKKLNGENYKQWKTNLNTILVIGNL----------------------------------RVYILASISDVLAKKHENMVTVREIMDSLHD
        M+S+ + +LAA KLNG NY  WK  +NT+L+I +L                                  R YILAS+S+VLAKKHE+M+T REIMDSL +
Subjt:  MSSSMIGLLAAKKLNGENYKQWKTNLNTILVIGNL----------------------------------RVYILASISDVLAKKHENMVTVREIMDSLHD

Query:  MFGQPSTQARHNALKFICNARIKEGTS-----------------------------------------FHSNAIMNKIEYDLTTLLNELKTYQFLIRSKR
        MFGQ S Q +H+ALK+I NAR+ EG S                                         F SNA+MNKI Y LTTLLNEL+T++ L++ K 
Subjt:  MFGQPSTQARHNALKFICNARIKEGTS-----------------------------------------FHSNAIMNKIEYDLTTLLNELKTYQFLIRSKR

Query:  LEGEENVATS-KRLHGGSTSGTKSAPSSSGSKTFKKKKKSGKGNGADPTAAARELKAKVTKKGKCFSYNVEGHWKRNYPKYFGEKKKAKEGKYDLLVLET
         +GE NVATS ++ H GSTSGTKS PSSSG+K + KKKK G+GN A+  AA    KAK   KG CF  N EGHWKRN PKY  EKKKAK+GKYDLLVLET
Subjt:  LEGEENVATS-KRLHGGSTSGTKSAPSSSGSKTFKKKKKSGKGNGADPTAAARELKAKVTKKGKCFSYNVEGHWKRNYPKYFGEKKKAKEGKYDLLVLET
A0A5A7TWB9 Gag/pol protein3.3e-5648Show/hide
Query:  MSSSMIGLLAAKKLNGENYKQWKTNLNTILVIGNL----------------------------------RVYILASISDVLAKKHENMVTVREIMDSLHD
        M+S+ + +LAA KLNG NY  WK  +NT+L+I +L                                  R YILAS+S+VLAKKHE+M+T REIMDSL +
Subjt:  MSSSMIGLLAAKKLNGENYKQWKTNLNTILVIGNL----------------------------------RVYILASISDVLAKKHENMVTVREIMDSLHD

Query:  MFGQPSTQARHNALKFICNARIKEGTS-----------------------------------------FHSNAIMNKIEYDLTTLLNELKTYQFLIRSKR
        MFGQ S Q +H+ALK+I NAR+ EG S                                         F SNA+MNKI Y LTTLLNEL+T++ L++ K 
Subjt:  MFGQPSTQARHNALKFICNARIKEGTS-----------------------------------------FHSNAIMNKIEYDLTTLLNELKTYQFLIRSKR

Query:  LEGEENVATS-KRLHGGSTSGTKSAPSSSGSKTFKKKKKSGKGNGADPTAAARELKAKVTKKGKCFSYNVEGHWKRNYPKYFGEKKKAKEGKYDLLVLET
         +GE NVATS ++ H GSTSGTKS PSSSG+K + KKKK G+GN A+  AA    KAK   KG CF  N EGHWKRN PKY  EKKKAK+GKYDLLVLET
Subjt:  LEGEENVATS-KRLHGGSTSGTKSAPSSSGSKTFKKKKKSGKGNGADPTAAARELKAKVTKKGKCFSYNVEGHWKRNYPKYFGEKKKAKEGKYDLLVLET
A0A5A7UGV2 Gag/pol protein3.3e-5648Show/hide
Query:  MSSSMIGLLAAKKLNGENYKQWKTNLNTILVIGNL----------------------------------RVYILASISDVLAKKHENMVTVREIMDSLHD
        M+S+ + +LAA KLNG NY  WK  +NT+L+I +L                                  R YILAS+S+VLAKKHE+M+T REIMDSL +
Subjt:  MSSSMIGLLAAKKLNGENYKQWKTNLNTILVIGNL----------------------------------RVYILASISDVLAKKHENMVTVREIMDSLHD

Query:  MFGQPSTQARHNALKFICNARIKEGTS-----------------------------------------FHSNAIMNKIEYDLTTLLNELKTYQFLIRSKR
        MFGQ S Q +H+ALK+I NAR+ EG S                                         F SNA+MNKI Y LTTLLNEL+T++ L++ K 
Subjt:  MFGQPSTQARHNALKFICNARIKEGTS-----------------------------------------FHSNAIMNKIEYDLTTLLNELKTYQFLIRSKR

Query:  LEGEENVATS-KRLHGGSTSGTKSAPSSSGSKTFKKKKKSGKGNGADPTAAARELKAKVTKKGKCFSYNVEGHWKRNYPKYFGEKKKAKEGKYDLLVLET
         +GE NVATS ++ H GSTSGTKS PSSSG+K + KKKK G+GN A+  AA    KAK   KG CF  N EGHWKRN PKY  EKKKAK+GKYDLLVLET
Subjt:  LEGEENVATS-KRLHGGSTSGTKSAPSSSGSKTFKKKKKSGKGNGADPTAAARELKAKVTKKGKCFSYNVEGHWKRNYPKYFGEKKKAKEGKYDLLVLET
A0A5A7V4M1 Gag/pol protein3.3e-5648Show/hide
Query:  MSSSMIGLLAAKKLNGENYKQWKTNLNTILVIGNL----------------------------------RVYILASISDVLAKKHENMVTVREIMDSLHD
        M+S+ + +LAA KLNG NY  WK  +NT+L+I +L                                  R YILAS+S+VLAKKHE+M+T REIMDSL +
Subjt:  MSSSMIGLLAAKKLNGENYKQWKTNLNTILVIGNL----------------------------------RVYILASISDVLAKKHENMVTVREIMDSLHD

Query:  MFGQPSTQARHNALKFICNARIKEGTS-----------------------------------------FHSNAIMNKIEYDLTTLLNELKTYQFLIRSKR
        MFGQ S Q +H+ALK+I NAR+ EG S                                         F SNA+MNKI Y LTTLLNEL+T++ L++ K 
Subjt:  MFGQPSTQARHNALKFICNARIKEGTS-----------------------------------------FHSNAIMNKIEYDLTTLLNELKTYQFLIRSKR

Query:  LEGEENVATS-KRLHGGSTSGTKSAPSSSGSKTFKKKKKSGKGNGADPTAAARELKAKVTKKGKCFSYNVEGHWKRNYPKYFGEKKKAKEGKYDLLVLET
         +GE NVATS ++ H GSTSGTKS PSSSG+K + KKKK G+GN A+  AA    KAK   KG CF  N EGHWKRN PKY  EKKKAK+GKYDLLVLET
Subjt:  LEGEENVATS-KRLHGGSTSGTKSAPSSSGSKTFKKKKKSGKGNGADPTAAARELKAKVTKKGKCFSYNVEGHWKRNYPKYFGEKKKAKEGKYDLLVLET
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATCCTGGGCGCGGCTTCCCAATGGAAGATGTTTGCATGGTTCAATATCAAGCATGTCTAGTTCTATGATAGGATTACTTGCCGCCAAAAAACTTAACGGT
GAAAACTACAAGCAATGGAAAACGAACTTGAATACAATTCTCGTGATAGGTAATCTAAGAGTCTACATCTTGGCAAGCATATCTGACGTGTTGGCCAAGAAGCAT
GAAAACATGGTCACCGTTAGGGAGATCATGGATTCGTTGCATGACATGTTTGGACAACCATCCACTCAAGCCCGACACAATGCTCTTAAGTTCATTTGCAACGCC
CGCATTAAAGAGGGAACATCATTCCACAGTAATGCTATTATGAACAAGATAGAGTACGACCTTACCACACTCTTAAACGAGTTGAAGACTTATCAGTTTCTTATT
AGGAGTAAAAGACTAGAAGGGGAGGAAAACGTTGCCACTTCAAAACGGCTCCATGGAGGTTCCACCTCAGGAACTAAGTCTGCACCTTCTTCTTCTGGAAGTAAG
ACTTTTAAGAAGAAAAAGAAGAGTGGTAAGGGGAATGGAGCTGACCCTACTGCTGCTGCCCGAGAGTTGAAAGCCAAGGTTACAAAGAAAGGAAAGTGTTTCTCC
TACAACGTGGAAGGACACTGGAAGAGGAACTACCCAAAATACTTTGGTGAAAAGAAGAAAGCCAAAGAAGGTAAATATGATTTATTAGTACTTGAAACCTATGTT
AATGGAGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCATCCTGGGCGCGGCTTCCCAATGGAAGATGTTTGCATGGTTCAATATCAAGCATGTCTAGTTCTATGATAGGATTACTTGCCGCCAAAAAACTTAACGGT
GAAAACTACAAGCAATGGAAAACGAACTTGAATACAATTCTCGTGATAGGTAATCTAAGAGTCTACATCTTGGCAAGCATATCTGACGTGTTGGCCAAGAAGCAT
GAAAACATGGTCACCGTTAGGGAGATCATGGATTCGTTGCATGACATGTTTGGACAACCATCCACTCAAGCCCGACACAATGCTCTTAAGTTCATTTGCAACGCC
CGCATTAAAGAGGGAACATCATTCCACAGTAATGCTATTATGAACAAGATAGAGTACGACCTTACCACACTCTTAAACGAGTTGAAGACTTATCAGTTTCTTATT
AGGAGTAAAAGACTAGAAGGGGAGGAAAACGTTGCCACTTCAAAACGGCTCCATGGAGGTTCCACCTCAGGAACTAAGTCTGCACCTTCTTCTTCTGGAAGTAAG
ACTTTTAAGAAGAAAAAGAAGAGTGGTAAGGGGAATGGAGCTGACCCTACTGCTGCTGCCCGAGAGTTGAAAGCCAAGGTTACAAAGAAAGGAAAGTGTTTCTCC
TACAACGTGGAAGGACACTGGAAGAGGAACTACCCAAAATACTTTGGTGAAAAGAAGAAAGCCAAAGAAGGTAAATATGATTTATTAGTACTTGAAACCTATGTT
AATGGAGAATGA
Protein sequenceShow/hide protein sequence
MSSWARLPNGRCLHGSISSMSSSMIGLLAAKKLNGENYKQWKTNLNTILVIGNLRVYILASISDVLAKKHENMVTVREIMDSLHDMFGQPSTQARHNALKFICNA
RIKEGTSFHSNAIMNKIEYDLTTLLNELKTYQFLIRSKRLEGEENVATSKRLHGGSTSGTKSAPSSSGSKTFKKKKKSGKGNGADPTAAARELKAKVTKKGKCFS
YNVEGHWKRNYPKYFGEKKKAKEGKYDLLVLETYVNGE