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Moc08g28530 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g28530
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionCCHC-type domain-containing protein
Genome locationchr8:20529505..20530155
RNA-Seq ExpressionMoc08g28530
SyntenyMoc08g28530
Gene Ontology termsNA
InterPro domainsIPR025558 - Domain of unknown function DUF4283


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PNX92709.1 cysteine desulfurase mitochondrial-like [Trifolium pratense]2.3e-1443.69Show/hide
Query:  KPDNLSFDKVSLWIHFYNLPLGCRNRKMAIRLGNAVGSFEDV---DCNRGVFCCGESLWVRVRYDISKALCRGIKLNIDGLIGGVWIPMKYERLPEFAPT
        +P  L  D+VS W+  Y+LPL  R+  MA +LGN +G+FE++   DCNR     G+ L +RV  D+ K L RG KL+  G    +W+  KYERLP F   
Subjt:  KPDNLSFDKVSLWIHFYNLPLGCRNRKMAIRLGNAVGSFEDV---DCNRGVFCCGESLWVRVRYDISKALCRGIKLNIDGLIGGVWIPMKYERLPEFAPT

Query:  VGR
         GR
Subjt:  VGR

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]6.2e-3640.09Show/hide
Query:  MAAEDLLEDWRNLSLTAEEEEIAVDVDRDAVEDTGKALSMSLMGKLLADH--------------------------------------------------
        MAA +LLE+W+N  LT+EE++IAVD+D  A+E TGK L +SL+ KLL+                                                    
Subjt:  MAAEDLLEDWRNLSLTAEEEEIAVDVDRDAVEDTGKALSMSLMGKLLADH--------------------------------------------------

Query:  --------------TMTKPDNLSFDKVSLWIHFYNLPLGCRNRKMAIRLGNAVGSFEDVDCNRGVFCCGESLWVRVRYDISKALCRGIKLNIDGLIGGVW
                      ++TKP ++ F  VSLW+HF++L L C N+ MA RLGNA+G FEDV+ N   FC G  L VRVR+D+ K L RGIKLN+DG +GG W
Subjt:  --------------TMTKPDNLSFDKVSLWIHFYNLPLGCRNRKMAIRLGNAVGSFEDVDCNRGVFCCGESLWVRVRYDISKALCRGIKLNIDGLIGGVW

Query:  IPMKYERLPEFAPTVGR
        IP++YERLP+F    GR
Subjt:  IPMKYERLPEFAPTVGR

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]1.8e-3040Show/hide
Query:  MAAEDLLEDWRNLSLTAEEEEIAVDVDRDAVEDTGKALSMSLMGKLLA-------------------DHTMT----------------------------
        M  E+LL DW+   LT+EE+EIA+DVD DAV+   + L+ SL+GKLLA                   +H +T                            
Subjt:  MAAEDLLEDWRNLSLTAEEEEIAVDVDRDAVEDTGKALSMSLMGKLLA-------------------DHTMT----------------------------

Query:  ----------KP------DNLSFDKVSLWIHFYNLPLGCRNRKMAIRLGNAVGSFEDVDCNRGVFCCGESLWVRVRYDISKALCRGIKLNIDGLIGGVWI
                  KP        L F++V+ WIH ++LP+   N+ MAIRLGNA+G+F DVDCN   F  G SL +RV  DI+K L RGIK+NIDG +GG WI
Subjt:  ----------KP------DNLSFDKVSLWIHFYNLPLGCRNRKMAIRLGNAVGSFEDVDCNRGVFCCGESLWVRVRYDISKALCRGIKLNIDGLIGGVWI

Query:  PMKYERLPEF
        P++YERLP+F
Subjt:  PMKYERLPEF

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]6.7e-3038.86Show/hide
Query:  MAAEDLLEDWRNLSLTAEEEEIAVDVDRDAVEDTGKALSMSLMGKLLADHTMT-----------------------------------------------
        MA  DLLE+W+N  LT+EEEE A+DVD  A   TG  L   L+GKL     +T                                               
Subjt:  MAAEDLLEDWRNLSLTAEEEEIAVDVDRDAVEDTGKALSMSLMGKLLADHTMT-----------------------------------------------

Query:  -----------------KPDNLSFDKVSLWIHFYNLPLGCRNRKMAIRLGNAVGSFEDVDCNRGVFCCGESLWVRVRYDISKALCRGIKLNIDGLIGGVW
                          P  L F K+ +W+ F++LPLGC  R MAIRLGNA+G FE+ DC+      G +L VRV  DISK L RGIKLN+DG IGG W
Subjt:  -----------------KPDNLSFDKVSLWIHFYNLPLGCRNRKMAIRLGNAVGSFEDVDCNRGVFCCGESLWVRVRYDISKALCRGIKLNIDGLIGGVW

Query:  IPMKYERLPEF
        IP++YERLP+F
Subjt:  IPMKYERLPEF

XP_042950114.1 uncharacterized protein LOC122282228 [Carya illinoinensis]1.4e-1440.59Show/hide
Query:  TKPDNLSFDKVSLWIHFYNLPLGCRNRKMAIRLGNAVGSFEDVDCNRGVFCCGESLWVRVRYDISKALCRGIKLNIDGLIGGVWIPMKYERLPEFAPTVG
        T+P  +SFDKVS WIH  NLPL C   +M  ++G++VG   ++D        G  L VR+  D+ + L RG  +++DG    +WIP +YE+LP+F    G
Subjt:  TKPDNLSFDKVSLWIHFYNLPLGCRNRKMAIRLGNAVGSFEDVDCNRGVFCCGESLWVRVRYDISKALCRGIKLNIDGLIGGVWIPMKYERLPEFAPTVG

Query:  R
        R
Subjt:  R

TrEMBL top hitse value%identityAlignment
A0A2K3MPT1 Cysteine desulfurase mitochondrial-like1.1e-1443.69Show/hide
Query:  KPDNLSFDKVSLWIHFYNLPLGCRNRKMAIRLGNAVGSFEDV---DCNRGVFCCGESLWVRVRYDISKALCRGIKLNIDGLIGGVWIPMKYERLPEFAPT
        +P  L  D+VS W+  Y+LPL  R+  MA +LGN +G+FE++   DCNR     G+ L +RV  D+ K L RG KL+  G    +W+  KYERLP F   
Subjt:  KPDNLSFDKVSLWIHFYNLPLGCRNRKMAIRLGNAVGSFEDV---DCNRGVFCCGESLWVRVRYDISKALCRGIKLNIDGLIGGVWIPMKYERLPEFAPT

Query:  VGR
         GR
Subjt:  VGR

A0A392M033 CCHC-type domain-containing protein (Fragment)5.5e-1443Show/hide
Query:  KPDNLSFDKVSLWIHFYNLPLGCRNRKMAIRLGNAVGSFEDVDCNRGVFCCGESLWVRVRYDISKALCRGIKLNIDGLIGGVWIPMKYERLPEFAPTVGR
        +P  L+ D VS W+  Y+LPL  R+  +A +LGN VG+FE++D  + +   G+ L +RV  D+ K L RG KLN  G    +W+  KYERLP F    GR
Subjt:  KPDNLSFDKVSLWIHFYNLPLGCRNRKMAIRLGNAVGSFEDVDCNRGVFCCGESLWVRVRYDISKALCRGIKLNIDGLIGGVWIPMKYERLPEFAPTVGR

A0A6J1BSZ1 uncharacterized protein LOC1110054813.0e-3640.09Show/hide
Query:  MAAEDLLEDWRNLSLTAEEEEIAVDVDRDAVEDTGKALSMSLMGKLLADH--------------------------------------------------
        MAA +LLE+W+N  LT+EE++IAVD+D  A+E TGK L +SL+ KLL+                                                    
Subjt:  MAAEDLLEDWRNLSLTAEEEEIAVDVDRDAVEDTGKALSMSLMGKLLADH--------------------------------------------------

Query:  --------------TMTKPDNLSFDKVSLWIHFYNLPLGCRNRKMAIRLGNAVGSFEDVDCNRGVFCCGESLWVRVRYDISKALCRGIKLNIDGLIGGVW
                      ++TKP ++ F  VSLW+HF++L L C N+ MA RLGNA+G FEDV+ N   FC G  L VRVR+D+ K L RGIKLN+DG +GG W
Subjt:  --------------TMTKPDNLSFDKVSLWIHFYNLPLGCRNRKMAIRLGNAVGSFEDVDCNRGVFCCGESLWVRVRYDISKALCRGIKLNIDGLIGGVW

Query:  IPMKYERLPEFAPTVGR
        IP++YERLP+F    GR
Subjt:  IPMKYERLPEFAPTVGR

A0A6J1DU55 uncharacterized protein LOC1110231358.5e-3140Show/hide
Query:  MAAEDLLEDWRNLSLTAEEEEIAVDVDRDAVEDTGKALSMSLMGKLLA-------------------DHTMT----------------------------
        M  E+LL DW+   LT+EE+EIA+DVD DAV+   + L+ SL+GKLLA                   +H +T                            
Subjt:  MAAEDLLEDWRNLSLTAEEEEIAVDVDRDAVEDTGKALSMSLMGKLLA-------------------DHTMT----------------------------

Query:  ----------KP------DNLSFDKVSLWIHFYNLPLGCRNRKMAIRLGNAVGSFEDVDCNRGVFCCGESLWVRVRYDISKALCRGIKLNIDGLIGGVWI
                  KP        L F++V+ WIH ++LP+   N+ MAIRLGNA+G+F DVDCN   F  G SL +RV  DI+K L RGIK+NIDG +GG WI
Subjt:  ----------KP------DNLSFDKVSLWIHFYNLPLGCRNRKMAIRLGNAVGSFEDVDCNRGVFCCGESLWVRVRYDISKALCRGIKLNIDGLIGGVWI

Query:  PMKYERLPEF
        P++YERLP+F
Subjt:  PMKYERLPEF

A0A6J1DX30 uncharacterized protein LOC1110248743.2e-3038.86Show/hide
Query:  MAAEDLLEDWRNLSLTAEEEEIAVDVDRDAVEDTGKALSMSLMGKLLADHTMT-----------------------------------------------
        MA  DLLE+W+N  LT+EEEE A+DVD  A   TG  L   L+GKL     +T                                               
Subjt:  MAAEDLLEDWRNLSLTAEEEEIAVDVDRDAVEDTGKALSMSLMGKLLADHTMT-----------------------------------------------

Query:  -----------------KPDNLSFDKVSLWIHFYNLPLGCRNRKMAIRLGNAVGSFEDVDCNRGVFCCGESLWVRVRYDISKALCRGIKLNIDGLIGGVW
                          P  L F K+ +W+ F++LPLGC  R MAIRLGNA+G FE+ DC+      G +L VRV  DISK L RGIKLN+DG IGG W
Subjt:  -----------------KPDNLSFDKVSLWIHFYNLPLGCRNRKMAIRLGNAVGSFEDVDCNRGVFCCGESLWVRVRYDISKALCRGIKLNIDGLIGGVW

Query:  IPMKYERLPEF
        IP++YERLP+F
Subjt:  IPMKYERLPEF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCAGAGGATCTCCTAGAAGATTGGAGGAATCTAAGTCTAACAGCAGAAGAAGAAGAAATTGCAGTGGACGTGGATAGGGATGCAGTAGAGGATACGGGA
AAGGCCTTGAGCATGAGCCTAATGGGAAAGTTGCTAGCAGATCATACGATGACTAAACCGGACAACTTAAGTTTTGATAAGGTATCGTTGTGGATACACTTCTAC
AATCTCCCTCTTGGGTGTAGAAATAGGAAGATGGCAATAAGACTGGGAAATGCAGTTGGCTCTTTTGAAGACGTTGATTGTAACAGAGGTGTTTTCTGTTGTGGA
GAGAGCCTTTGGGTTCGTGTTCGATATGATATCTCAAAAGCTTTGTGCAGAGGGATTAAATTGAATATCGATGGTCTAATTGGTGGAGTTTGGATTCCTATGAAA
TATGAGCGTCTTCCTGAGTTTGCTCCTACTGTGGGAAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCAGAGGATCTCCTAGAAGATTGGAGGAATCTAAGTCTAACAGCAGAAGAAGAAGAAATTGCAGTGGACGTGGATAGGGATGCAGTAGAGGATACGGGA
AAGGCCTTGAGCATGAGCCTAATGGGAAAGTTGCTAGCAGATCATACGATGACTAAACCGGACAACTTAAGTTTTGATAAGGTATCGTTGTGGATACACTTCTAC
AATCTCCCTCTTGGGTGTAGAAATAGGAAGATGGCAATAAGACTGGGAAATGCAGTTGGCTCTTTTGAAGACGTTGATTGTAACAGAGGTGTTTTCTGTTGTGGA
GAGAGCCTTTGGGTTCGTGTTCGATATGATATCTCAAAAGCTTTGTGCAGAGGGATTAAATTGAATATCGATGGTCTAATTGGTGGAGTTTGGATTCCTATGAAA
TATGAGCGTCTTCCTGAGTTTGCTCCTACTGTGGGAAGATAG
Protein sequenceShow/hide protein sequence
MAAEDLLEDWRNLSLTAEEEEIAVDVDRDAVEDTGKALSMSLMGKLLADHTMTKPDNLSFDKVSLWIHFYNLPLGCRNRKMAIRLGNAVGSFEDVDCNRGVFCCG
ESLWVRVRYDISKALCRGIKLNIDGLIGGVWIPMKYERLPEFAPTVGR