; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc08g28580 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g28580
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr8:20587013..20591859
RNA-Seq ExpressionMoc08g28580
SyntenyMoc08g28580
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015380966.1 uncharacterized protein LOC107174510 [Citrus sinensis]3.0e-2641.48Show/hide
Query:  LADDRDRAIRAYTALAFYNFNPAIVEMDIDANEFELTPVMFQMLQTVGQFGGHESEDPHLHLRYFL--------------------------------GA
        +ADDRDRAIR Y  L     +P I+  ++DA  FEL P+MFQMLQTVGQF G  +EDPHLH++ FL                                 +
Subjt:  LADDRDRAIRAYTALAFYNFNPAIVEMDIDANEFELTPVMFQMLQTVGQFGGHESEDPHLHLRYFL--------------------------------GA

Query:  TRLVVDACANEDLLSKSYAEVFNILERISSNHHQWSNLRSVVDKNSRGMHDDDVLTSISTKISNLEDMMMKNMSNA
        TRL+VDA AN  LL KSY E + ILERI++N++QW + R    + S G+H+ D +T++S ++++L + M+K M++A
Subjt:  TRLVVDACANEDLLSKSYAEVFNILERISSNHHQWSNLRSVVDKNSRGMHDDDVLTSISTKISNLEDMMMKNMSNA

XP_015389226.1 uncharacterized protein LOC107178482 [Citrus sinensis]2.1e-2452.46Show/hide
Query:  LADDRDRAIRAYTALAFYNFNPAIVEMDIDANEFELTPVMFQMLQTVGQFGGHESEDPHLHLRYFL----------GATRLVVDACANEDLLSKSYAEVF
        +ADDRDRAIR Y  L     +P IV  +++A  FEL P+MFQMLQT+GQF G  +EDPHLHL+ FL           +TRL+VDA AN  LLSKSY E +
Subjt:  LADDRDRAIRAYTALAFYNFNPAIVEMDIDANEFELTPVMFQMLQTVGQFGGHESEDPHLHLRYFL----------GATRLVVDACANEDLLSKSYAEVF

Query:  NILERISSNHHQWSNLRSVVDK
         ILERI++N++QW + R    K
Subjt:  NILERISSNHHQWSNLRSVVDK

XP_022153147.1 probable serine/threonine-protein kinase PBL11 [Momordica charantia]9.0e-3951.72Show/hide
Query:  MYDFQGLEFLLDEQIEGTPHKRRNGQRIQEQERN-RNLNSQAPNMVVEEMHEEEVVGAAAAPPLNAILLADDRDRAIRAYTALAFYNFNPAIVEMDIDAN
        M+D Q LE+LLD +IE T  +R   QR Q+ E N  +   + PN +V      EVV  AAAP LN ILLADD +RAIRAY AL  ++F+P I   +I+A 
Subjt:  MYDFQGLEFLLDEQIEGTPHKRRNGQRIQEQERN-RNLNSQAPNMVVEEMHEEEVVGAAAAPPLNAILLADDRDRAIRAYTALAFYNFNPAIVEMDIDAN

Query:  EFELTPVMFQMLQTVGQFGGHESEDPHLHLRYFL----------GATRLVVDACANEDLLSKSYAEVFNILERISSNHHQWSNLRSVVDKNSRGMHDDDV
         FEL PVMFQMLQTVG+F G+  ED HLHLRYFL           ATRLVVDA AN  LLSKSY E  +ILERIS+N++ WS+ R+  D+++ G++D++ 
Subjt:  EFELTPVMFQMLQTVGQFGGHESEDPHLHLRYFL----------GATRLVVDACANEDLLSKSYAEVFNILERISSNHHQWSNLRSVVDKNSRGMHDDDV

Query:  LTS
         +S
Subjt:  LTS

XP_022158490.1 uncharacterized protein LOC111024970 [Momordica charantia]7.4e-2540.29Show/hide
Query:  PNMVVEEMHEEEVVGAAAAPPLNAILLADDRDRAIRAYTALAFYNFNPAIVEMDIDANEFELTPVMFQMLQTVGQFGGHESEDPHLHLRYFL--------
        PN VVE ++E EVV  AAAPPLN ILL DD +R IRAY A A + F+P I    I+A  FEL  +MFQMLQTVGQF G+ SEDPHLHLRYFL        
Subjt:  PNMVVEEMHEEEVVGAAAAPPLNAILLADDRDRAIRAYTALAFYNFNPAIVEMDIDANEFELTPVMFQMLQTVGQFGGHESEDPHLHLRYFL--------

Query:  ------------------GATRLVVDACANE------DLLSKSYAEVFNILERISSNHHQWSNLRSVVDKNSRGMHDDDVLTSISTKISNLEDMMMKNMS
                            TR  +++   E      DL  K + E+F      S      S+ ++V ++N+   +D++ + +++ +I+NL + M+KNM+
Subjt:  ------------------GATRLVVDACANE------DLLSKSYAEVFNILERISSNHHQWSNLRSVVDKNSRGMHDDDVLTSISTKISNLEDMMMKNMS

Query:  NAGTSN
         A TS+
Subjt:  NAGTSN

XP_022158768.1 uncharacterized protein LOC111025234 [Momordica charantia]4.3e-3346.56Show/hide
Query:  PNMVVEEMHEEEVVGAAAAPPLNAILLADDRDRAIRAYTALAFYNFNPAIVEMDIDANEFELTPVMFQMLQTVGQFGGHESEDPHLHLRYFLGAT-----
        P + VE +  +   G A  PPLNAILL DD ++ IRAY A AF++FNP IV+  I+A+ FEL P MFQMLQ    F G  SEDP+ HL+YF+        
Subjt:  PNMVVEEMHEEEVVGAAAAPPLNAILLADDRDRAIRAYTALAFYNFNPAIVEMDIDANEFELTPVMFQMLQTVGQFGGHESEDPHLHLRYFLGAT-----

Query:  -RLVVDACANEDLLSKSYAEVFNILERISSNHHQWSNLRSVVDKNSRGMHDDDVLTSISTKISNLEDMMMKNM--SNAGTSNARLPPLE
           V+DA +N+ LL K YAE F+ILE IS N HQ S  R+V    S+G+ +DDV+ ++++KIS L D+ MK++  S+AG S A++  ++
Subjt:  -RLVVDACANEDLLSKSYAEVFNILERISSNHHQWSNLRSVVDKNSRGMHDDDVLTSISTKISNLEDMMMKNM--SNAGTSNARLPPLE

TrEMBL top hitse value%identityAlignment
A0A6J1DI54 probable serine/threonine-protein kinase PBL114.3e-3951.72Show/hide
Query:  MYDFQGLEFLLDEQIEGTPHKRRNGQRIQEQERN-RNLNSQAPNMVVEEMHEEEVVGAAAAPPLNAILLADDRDRAIRAYTALAFYNFNPAIVEMDIDAN
        M+D Q LE+LLD +IE T  +R   QR Q+ E N  +   + PN +V      EVV  AAAP LN ILLADD +RAIRAY AL  ++F+P I   +I+A 
Subjt:  MYDFQGLEFLLDEQIEGTPHKRRNGQRIQEQERN-RNLNSQAPNMVVEEMHEEEVVGAAAAPPLNAILLADDRDRAIRAYTALAFYNFNPAIVEMDIDAN

Query:  EFELTPVMFQMLQTVGQFGGHESEDPHLHLRYFL----------GATRLVVDACANEDLLSKSYAEVFNILERISSNHHQWSNLRSVVDKNSRGMHDDDV
         FEL PVMFQMLQTVG+F G+  ED HLHLRYFL           ATRLVVDA AN  LLSKSY E  +ILERIS+N++ WS+ R+  D+++ G++D++ 
Subjt:  EFELTPVMFQMLQTVGQFGGHESEDPHLHLRYFL----------GATRLVVDACANEDLLSKSYAEVFNILERISSNHHQWSNLRSVVDKNSRGMHDDDV

Query:  LTS
         +S
Subjt:  LTS

A0A6J1DVZ9 uncharacterized protein LOC1110249703.6e-2540.29Show/hide
Query:  PNMVVEEMHEEEVVGAAAAPPLNAILLADDRDRAIRAYTALAFYNFNPAIVEMDIDANEFELTPVMFQMLQTVGQFGGHESEDPHLHLRYFL--------
        PN VVE ++E EVV  AAAPPLN ILL DD +R IRAY A A + F+P I    I+A  FEL  +MFQMLQTVGQF G+ SEDPHLHLRYFL        
Subjt:  PNMVVEEMHEEEVVGAAAAPPLNAILLADDRDRAIRAYTALAFYNFNPAIVEMDIDANEFELTPVMFQMLQTVGQFGGHESEDPHLHLRYFL--------

Query:  ------------------GATRLVVDACANE------DLLSKSYAEVFNILERISSNHHQWSNLRSVVDKNSRGMHDDDVLTSISTKISNLEDMMMKNMS
                            TR  +++   E      DL  K + E+F      S      S+ ++V ++N+   +D++ + +++ +I+NL + M+KNM+
Subjt:  ------------------GATRLVVDACANE------DLLSKSYAEVFNILERISSNHHQWSNLRSVVDKNSRGMHDDDVLTSISTKISNLEDMMMKNMS

Query:  NAGTSN
         A TS+
Subjt:  NAGTSN

A0A6J1DX14 uncharacterized protein LOC1110252342.1e-3346.56Show/hide
Query:  PNMVVEEMHEEEVVGAAAAPPLNAILLADDRDRAIRAYTALAFYNFNPAIVEMDIDANEFELTPVMFQMLQTVGQFGGHESEDPHLHLRYFLGAT-----
        P + VE +  +   G A  PPLNAILL DD ++ IRAY A AF++FNP IV+  I+A+ FEL P MFQMLQ    F G  SEDP+ HL+YF+        
Subjt:  PNMVVEEMHEEEVVGAAAAPPLNAILLADDRDRAIRAYTALAFYNFNPAIVEMDIDANEFELTPVMFQMLQTVGQFGGHESEDPHLHLRYFLGAT-----

Query:  -RLVVDACANEDLLSKSYAEVFNILERISSNHHQWSNLRSVVDKNSRGMHDDDVLTSISTKISNLEDMMMKNM--SNAGTSNARLPPLE
           V+DA +N+ LL K YAE F+ILE IS N HQ S  R+V    S+G+ +DDV+ ++++KIS L D+ MK++  S+AG S A++  ++
Subjt:  -RLVVDACANEDLLSKSYAEVFNILERISSNHHQWSNLRSVVDKNSRGMHDDDVLTSISTKISNLEDMMMKNM--SNAGTSNARLPPLE

A0A6J1EQ90 uncharacterized protein LOC1114364112.2e-1928.32Show/hide
Query:  GLEFLLDEQIEGT------PHKRRNGQRIQEQERNRNLNSQAPNMVVEEMHEEEVVGAAAAPPLNAILLADDRDRAIRAYTALAFYNFNPAIVEMDIDAN
        GLEF+LD +IE T        K+   Q IQ+ E    LN +  N  +  M  +E + A      N I LADDR+RAIRAY   A    NP I+  +I   
Subjt:  GLEFLLDEQIEGT------PHKRRNGQRIQEQERNRNLNSQAPNMVVEEMHEEEVVGAAAAPPLNAILLADDRDRAIRAYTALAFYNFNPAIVEMDIDAN

Query:  EFELTPVMFQMLQTVGQFGGHESEDPHLHLRYFLG-----------------------------------------------------------------
         FEL PVMFQMLQT+GQF G   EDPHLHL+ FLG                                                                 
Subjt:  EFELTPVMFQMLQTVGQFGGHESEDPHLHLRYFLG-----------------------------------------------------------------

Query:  ------------------------------------------------------ATRLVVDACANEDLLSKSYAEVFNILERISSNHHQWSNLRSVVDKN
                                                               T+ VVDA AN  +LSK+Y E + ILERI+SN+ QW+++RS   + 
Subjt:  ------------------------------------------------------ATRLVVDACANEDLLSKSYAEVFNILERISSNHHQWSNLRSVVDKN

Query:  SRGMHDDDVLTSISTKISNLEDMMMKNMSNAGTSNARLP
        +RG+ + D L+SI+ +++++ + +++N++    S  + P
Subjt:  SRGMHDDDVLTSISTKISNLEDMMMKNMSNAGTSNARLP

U5CUI2 Retrotrans_gag domain-containing protein7.7e-2029.81Show/hide
Query:  LNAILLADDRDRAIRAYTALAFYNFNPAIVEMDIDANEFELTPVMFQMLQTVGQFGGHESEDPHLHLRYFL-----------------------------
        +N I+LADDR RAIR Y A  F   NP IV  +I A +FEL PVMFQMLQTVGQF G  +EDPHLHLR FL                             
Subjt:  LNAILLADDRDRAIRAYTALAFYNFNPAIVEMDIDANEFELTPVMFQMLQTVGQFGGHESEDPHLHLRYFL-----------------------------

Query:  -----------------------------------------------------------------------------------GATRLVVDACANEDLLS
                                                                                            A+R+V+DA AN  +LS
Subjt:  -----------------------------------------------------------------------------------GATRLVVDACANEDLLS

Query:  KSYAEVFNILERISSNHHQWSNLRSVVDKNSRGMHDDDVLTSISTKISNLEDMMMKNMSNAGTSN
        KSY E F ILE I+SN++QWSN R+   +   G+ + D +T+++ +++++ + ++KN+S     N
Subjt:  KSYAEVFNILERISSNHHQWSNLRSVVDKNSRGMHDDDVLTSISTKISNLEDMMMKNMSNAGTSN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAGGATTAGAGGAGAAATGTCGGAGCGTTGTTGTGCCAGAGCATATCAATGCTGGAGCATCGCTTGCTGCAGAAATTCCTGGGCAACAATATTCATACTTG
GGCGTCTCGGAAGGGAACCACGTCGGTTTGAGCATCAGTAGTGATTTTATGCTAGAGTGTCTTCTGTTGATGTATGATTTCCAAGGGTTAGAATTTCTGCTTGAT
GAACAAATTGAAGGAACGCCTCATAAGAGGAGAAATGGGCAGAGAATACAAGAGCAGGAGAGGAATCGCAATTTGAATTCGCAAGCGCCGAATATGGTAGTTGAG
GAAATGCATGAGGAAGAGGTTGTTGGGGCAGCAGCAGCCCCTCCACTAAATGCTATCCTGTTAGCAGATGACAGGGATAGAGCTATTAGAGCATACACGGCTCTA
GCGTTTTATAATTTTAATCCAGCTATAGTGGAGATGGATATAGATGCTAATGAGTTTGAGCTTACACCCGTAATGTTTCAAATGCTCCAAACTGTGGGACAGTTT
GGGGGTCATGAATCAGAAGATCCCCACCTTCATCTGAGATATTTTCTTGGAGCTACAAGGTTAGTGGTAGATGCTTGTGCAAATGAAGATCTCCTATCAAAGTCA
TATGCTGAAGTATTCAACATCCTTGAACGAATCTCATCTAACCATCACCAATGGTCGAACCTAAGATCAGTTGTGGATAAAAATTCAAGAGGAATGCATGATGAT
GATGTGCTAACTTCGATAAGTACAAAGATCTCAAATCTAGAGGACATGATGATGAAGAATATGTCTAATGCTGGAACATCTAATGCCAGACTACCACCCCTTGAG
AAAAATGAAATGAAAAAGAATGTTTCTGTAAATGTTGTGCGTCTTGCATCTTGTGCATGCTCTACTTTATCTAGTAGTGTCAATGTTATGTGCATTTGTGGTTCT
AAAGTTTTGTCGATGTTGAGGCTTCAGTTGCAGTTTGGGGGTATGCTGGAGCATTTTCATGCTCTTTCTTTAGTTGCATTGAGGACAATGCAAGCTTTTAAAATT
TTGGAGAACTTGCTGAGGAGTAGTAGAATGTCAGGATTAGAGGAGAAATGTCGGAGCGTTGTTGTGCCAGAGCATGTCAATGCTGGAGCATCGCTTGCTGCAGAA
ATTCCTAGGCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCAGGATTAGAGGAGAAATGTCGGAGCGTTGTTGTGCCAGAGCATATCAATGCTGGAGCATCGCTTGCTGCAGAAATTCCTGGGCAACAATATTCATACTTG
GGCGTCTCGGAAGGGAACCACGTCGGTTTGAGCATCAGTAGTGATTTTATGCTAGAGTGTCTTCTGTTGATGTATGATTTCCAAGGGTTAGAATTTCTGCTTGAT
GAACAAATTGAAGGAACGCCTCATAAGAGGAGAAATGGGCAGAGAATACAAGAGCAGGAGAGGAATCGCAATTTGAATTCGCAAGCGCCGAATATGGTAGTTGAG
GAAATGCATGAGGAAGAGGTTGTTGGGGCAGCAGCAGCCCCTCCACTAAATGCTATCCTGTTAGCAGATGACAGGGATAGAGCTATTAGAGCATACACGGCTCTA
GCGTTTTATAATTTTAATCCAGCTATAGTGGAGATGGATATAGATGCTAATGAGTTTGAGCTTACACCCGTAATGTTTCAAATGCTCCAAACTGTGGGACAGTTT
GGGGGTCATGAATCAGAAGATCCCCACCTTCATCTGAGATATTTTCTTGGAGCTACAAGGTTAGTGGTAGATGCTTGTGCAAATGAAGATCTCCTATCAAAGTCA
TATGCTGAAGTATTCAACATCCTTGAACGAATCTCATCTAACCATCACCAATGGTCGAACCTAAGATCAGTTGTGGATAAAAATTCAAGAGGAATGCATGATGAT
GATGTGCTAACTTCGATAAGTACAAAGATCTCAAATCTAGAGGACATGATGATGAAGAATATGTCTAATGCTGGAACATCTAATGCCAGACTACCACCCCTTGAG
AAAAATGAAATGAAAAAGAATGTTTCTGTAAATGTTGTGCGTCTTGCATCTTGTGCATGCTCTACTTTATCTAGTAGTGTCAATGTTATGTGCATTTGTGGTTCT
AAAGTTTTGTCGATGTTGAGGCTTCAGTTGCAGTTTGGGGGTATGCTGGAGCATTTTCATGCTCTTTCTTTAGTTGCATTGAGGACAATGCAAGCTTTTAAAATT
TTGGAGAACTTGCTGAGGAGTAGTAGAATGTCAGGATTAGAGGAGAAATGTCGGAGCGTTGTTGTGCCAGAGCATGTCAATGCTGGAGCATCGCTTGCTGCAGAA
ATTCCTAGGCAGTAG
Protein sequenceShow/hide protein sequence
MPGLEEKCRSVVVPEHINAGASLAAEIPGQQYSYLGVSEGNHVGLSISSDFMLECLLLMYDFQGLEFLLDEQIEGTPHKRRNGQRIQEQERNRNLNSQAPNMVVE
EMHEEEVVGAAAAPPLNAILLADDRDRAIRAYTALAFYNFNPAIVEMDIDANEFELTPVMFQMLQTVGQFGGHESEDPHLHLRYFLGATRLVVDACANEDLLSKS
YAEVFNILERISSNHHQWSNLRSVVDKNSRGMHDDDVLTSISTKISNLEDMMMKNMSNAGTSNARLPPLEKNEMKKNVSVNVVRLASCACSTLSSSVNVMCICGS
KVLSMLRLQLQFGGMLEHFHALSLVALRTMQAFKILENLLRSSRMSGLEEKCRSVVVPEHVNAGASLAAEIPRQ