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Moc08g29780 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g29780
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Genome locationchr8:21309245..21310363
RNA-Seq ExpressionMoc08g29780
SyntenyMoc08g29780
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057621.1 hypothetical protein E6C27_scaffold1312G00050 [Cucumis melo var. makuwa]6.4e-1673.68Show/hide
Query:  VPRRSGRIVSQPDCYVGLAETQVVILDDGVEDSLTYKQATEDVDKDNWVKTMDLKMD
        +PRRSGR++SQP+CY+GL ETQVVI +DGVEDSL+YKQA  DVDKD WVK MDL+M+
Subjt:  VPRRSGRIVSQPDCYVGLAETQVVILDDGVEDSLTYKQATEDVDKDNWVKTMDLKMD
KAA0062410.1 gag/pol protein [Cucumis melo var. makuwa]2.9e-1677.19Show/hide
Query:  VPRRSGRIVSQPDCYVGLAETQVVILDDGVEDSLTYKQATEDVDKDNWVKTMDLKMD
        +PRRSGR VSQP+CY+GL ETQVVI DDG ED L+YKQAT DVDKD WVK MDLKM+
Subjt:  VPRRSGRIVSQPDCYVGLAETQVVILDDGVEDSLTYKQATEDVDKDNWVKTMDLKMD
TYK14867.1 gag/pol protein [Cucumis melo var. makuwa]6.4e-1673.68Show/hide
Query:  VPRRSGRIVSQPDCYVGLAETQVVILDDGVEDSLTYKQATEDVDKDNWVKTMDLKMD
        +PRRSGR++SQP+CY+GL ETQVVI +DGVEDSL+YKQA  DVDKD WVK MDL+M+
Subjt:  VPRRSGRIVSQPDCYVGLAETQVVILDDGVEDSLTYKQATEDVDKDNWVKTMDLKMD
TYK20422.1 gag/pol protein [Cucumis melo var. makuwa]3.2e-1563.01Show/hide
Query:  VPRRSGRIVSQPDCYVGLAETQVVILDDGVEDSLTYKQATEDVDKDNWVKTMDLKMDIVTPKFLGDTLHLEPG
        +PRRSGRIVSQP+ Y+GL ETQVVI DDGVED L+YKQA  DVDKD WVK MDL+M+ +    L + + L  G
Subjt:  VPRRSGRIVSQPDCYVGLAETQVVILDDGVEDSLTYKQATEDVDKDNWVKTMDLKMDIVTPKFLGDTLHLEPG
TYK26848.1 gag/pol protein [Cucumis melo var. makuwa]2.9e-1677.19Show/hide
Query:  VPRRSGRIVSQPDCYVGLAETQVVILDDGVEDSLTYKQATEDVDKDNWVKTMDLKMD
        +PRRSGR VSQP+CY+GL ETQVVI DDG ED L+YKQAT DVDKD WVK MDLKM+
Subjt:  VPRRSGRIVSQPDCYVGLAETQVVILDDGVEDSLTYKQATEDVDKDNWVKTMDLKMD
TrEMBL top hitse value%identityAlignment
A0A5A7UVS9 Reverse transcriptase Ty1/copia-type domain-containing protein3.1e-1673.68Show/hide
Query:  VPRRSGRIVSQPDCYVGLAETQVVILDDGVEDSLTYKQATEDVDKDNWVKTMDLKMD
        +PRRSGR++SQP+CY+GL ETQVVI +DGVEDSL+YKQA  DVDKD WVK MDL+M+
Subjt:  VPRRSGRIVSQPDCYVGLAETQVVILDDGVEDSLTYKQATEDVDKDNWVKTMDLKMD
A0A5D3CSF2 Gag/pol protein3.1e-1673.68Show/hide
Query:  VPRRSGRIVSQPDCYVGLAETQVVILDDGVEDSLTYKQATEDVDKDNWVKTMDLKMD
        +PRRSGR++SQP+CY+GL ETQVVI +DGVEDSL+YKQA  DVDKD WVK MDL+M+
Subjt:  VPRRSGRIVSQPDCYVGLAETQVVILDDGVEDSLTYKQATEDVDKDNWVKTMDLKMD
A0A5D3DA25 Gag/pol protein1.5e-1563.01Show/hide
Query:  VPRRSGRIVSQPDCYVGLAETQVVILDDGVEDSLTYKQATEDVDKDNWVKTMDLKMDIVTPKFLGDTLHLEPG
        +PRRSGRIVSQP+ Y+GL ETQVVI DDGVED L+YKQA  DVDKD WVK MDL+M+ +    L + + L  G
Subjt:  VPRRSGRIVSQPDCYVGLAETQVVILDDGVEDSLTYKQATEDVDKDNWVKTMDLKMDIVTPKFLGDTLHLEPG
A0A5D3DS50 Gag/pol protein1.4e-1677.19Show/hide
Query:  VPRRSGRIVSQPDCYVGLAETQVVILDDGVEDSLTYKQATEDVDKDNWVKTMDLKMD
        +PRRSGR VSQP+CY+GL ETQVVI DDG ED L+YKQAT DVDKD WVK MDLKM+
Subjt:  VPRRSGRIVSQPDCYVGLAETQVVILDDGVEDSLTYKQATEDVDKDNWVKTMDLKMD
A0A5D3DTI6 Gag/pol protein1.4e-1677.19Show/hide
Query:  VPRRSGRIVSQPDCYVGLAETQVVILDDGVEDSLTYKQATEDVDKDNWVKTMDLKMD
        +PRRSGR VSQP+CY+GL ETQVVI DDG ED L+YKQAT DVDKD WVK MDLKM+
Subjt:  VPRRSGRIVSQPDCYVGLAETQVVILDDGVEDSLTYKQATEDVDKDNWVKTMDLKMD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGCCTCGACGTAGTGGGAGGATTGTGTCACAACCCGACTGTTATGTGGGTTTAGCTGAAACCCAAGTTGTCATACTCGATGACGGCGTCGAGGATTCATTG
ACCTATAAACAGGCAACAGAAGATGTTGACAAGGACAATTGGGTCAAAACTATGGACCTGAAAATGGATATAGTAACACCCAAGTTTCTTGGAGATACGCTTCAC
CTCGAACCAGGCAAGGAGTTGCTCAGCCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGCCTCGACGTAGTGGGAGGATTGTGTCACAACCCGACTGTTATGTGGGTTTAGCTGAAACCCAAGTTGTCATACTCGATGACGGCGTCGAGGATTCATTG
ACCTATAAACAGGCAACAGAAGATGTTGACAAGGACAATTGGGTCAAAACTATGGACCTGAAAATGGATATAGTAACACCCAAGTTTCTTGGAGATACGCTTCAC
CTCGAACCAGGCAAGGAGTTGCTCAGCCTTTAG
Protein sequenceShow/hide protein sequence
MVPRRSGRIVSQPDCYVGLAETQVVILDDGVEDSLTYKQATEDVDKDNWVKTMDLKMDIVTPKFLGDTLHLEPGKELLSL