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Moc08g29990 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g29990
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionCCHC-type domain-containing protein
Genome locationchr8:21473686..21476760
RNA-Seq ExpressionMoc08g29990
SyntenyMoc08g29990
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063032.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa]3.3e-0527.36Show/hide
Query:  GKNAMTSDKGLVVDPPATQPLSPKSATEHLLLVEDSLGEVHSSVQTIHGLMENLSKHLENIAIEQ--ERLCDDLDECGGVLELVKNVEFFLLHQYIERQK
        G N    D     +      LSP+++T  LL VEDSLG++H     +   +E L++ ++ +      E    +    GG     +  E        ER+ 
Subjt:  GKNAMTSDKGLVVDPPATQPLSPKSATEHLLLVEDSLGEVHSSVQTIHGLMENLSKHLENIAIEQ--ERLCDDLDECGGVLELVKNVEFFLLHQYIERQK

Query:  ----GRIGRLQAPVQYFDLVGS-KPTASDIGGASTSSGSKPTDTTSKT----------ITPIKTPNTTIRKGAT--TYARPNLGKCFRCAQQGHLSKECP
            G +G+    +    L  S +  A +   +   S  K TD    T          I        ++ +G T   Y RP+LGKCFRC +  HLS  CP
Subjt:  ----GRIGRLQAPVQYFDLVGS-KPTASDIGGASTSSGSKPTDTTSKT----------ITPIKTPNTTIRKGAT--TYARPNLGKCFRCAQQGHLSKECP

Query:  QCRTIAMMEKDD
        Q +TIA+ E +D
Subjt:  QCRTIAMMEKDD

TYK16316.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa]5.6e-0526.42Show/hide
Query:  GKNAMTSDKGLVVDPPATQPLSPKSATEHLLLVEDSLGEVHSSVQTIHGLMENLSKHLENI---AIEQERLCDDLDECGGVLELVKNVEFFLLHQYIERQ
        G N    D     +      LSP+++T  LL VEDSLG++H     +   +E L++ ++ +   A  +    +D +  G   E   +       +   R 
Subjt:  GKNAMTSDKGLVVDPPATQPLSPKSATEHLLLVEDSLGEVHSSVQTIHGLMENLSKHLENI---AIEQERLCDDLDECGGVLELVKNVEFFLLHQYIERQ

Query:  KGRIGRLQAPVQYFDLV----GSKPTASDIGGASTSSGSKPTDTTSKT----------ITPIKTPNTTIRKGAT--TYARPNLGKCFRCAQQGHLSKECP
           +G +   V+   +V     ++  A +   +   S  K TD    T          I        ++ +G T   Y RP+LGKCFRC +  HLS  CP
Subjt:  KGRIGRLQAPVQYFDLV----GSKPTASDIGGASTSSGSKPTDTTSKT----------ITPIKTPNTTIRKGAT--TYARPNLGKCFRCAQQGHLSKECP

Query:  QCRTIAMMEKDD
        Q +TIA+ E +D
Subjt:  QCRTIAMMEKDD

XP_022138327.1 uncharacterized protein LOC111009540 isoform X1 [Momordica charantia]9.8e-1046.43Show/hide
Query:  SKPTASDIG-----GASTSSGSKPTDTTSKTITPIKTPNTTIRKGATTYARPNLGKCFRCAQQGHLSKECPQCRTIAMMEKDDL
        SK   +D G     G +++S +KP D  +K+ +P KTP+T+ ++G   Y RP LGKCFRC Q  HLS ECPQ R +A++++DDL
Subjt:  SKPTASDIG-----GASTSSGSKPTDTTSKTITPIKTPNTTIRKGATTYARPNLGKCFRCAQQGHLSKECPQCRTIAMMEKDDL

XP_022138327.1 uncharacterized protein LOC111009540 isoform X1 [Momordica charantia]1.9e-0530.11Show/hide
Query:  LSPKSATEHLLLVEDSLGEVHSSVQTIHGLMENLSKHLENIAIEQERLCDDLDECG--GVLELVKNV-----EFFLL---HQYIERQKGRIGRLQAPVQY
        LSP++ +  LL VE     + +++Q +   +E L+ H +   + QER+C D  +CG  G     + V     EF  L      +E ++  I R    ++ 
Subjt:  LSPKSATEHLLLVEDSLGEVHSSVQTIHGLMENLSKHLENIAIEQERLCDDLDECG--GVLELVKNV-----EFFLL---HQYIERQKGRIGRLQAPVQY

Query:  FDLVGSKPTASDIGGASTSSGS--KPTDTTSKTITPIKTPNTTIRKGA-TTYARPNLGKCFRCAQQGHLSKECPQCRTIAMMEKDD
         D+   K T       S+ S +   P    +K     K   T  +K A   Y RPNL KCF C Q  HLS  CP+ +T+A++E+D+
Subjt:  FDLVGSKPTASDIGGASTSSGS--KPTDTTSKTITPIKTPNTTIRKGA-TTYARPNLGKCFRCAQQGHLSKECPQCRTIAMMEKDD

XP_022138328.1 uncharacterized protein LOC111009540 isoform X2 [Momordica charantia]8.9e-1158.11Show/hide
Query:  MVGKNAMTSDKGLVVDPPATQPLSPKSATEHLLLVEDSLGEVHSSVQTIHGLMENLSKHLENIAIEQERLCDDL
        M GK+ + + KG  VD    Q LSPKS T  LLL+EDSLGEV S+VQ IH L+ENL + LE I  EQERL  DL
Subjt:  MVGKNAMTSDKGLVVDPPATQPLSPKSATEHLLLVEDSLGEVHSSVQTIHGLMENLSKHLENIAIEQERLCDDL

XP_022138328.1 uncharacterized protein LOC111009540 isoform X2 [Momordica charantia]9.8e-1046.43Show/hide
Query:  SKPTASDIG-----GASTSSGSKPTDTTSKTITPIKTPNTTIRKGATTYARPNLGKCFRCAQQGHLSKECPQCRTIAMMEKDDL
        SK   +D G     G +++S +KP D  +K+ +P KTP+T+ ++G   Y RP LGKCFRC Q  HLS ECPQ R +A++++DDL
Subjt:  SKPTASDIG-----GASTSSGSKPTDTTSKTITPIKTPNTTIRKGATTYARPNLGKCFRCAQQGHLSKECPQCRTIAMMEKDDL

XP_022138328.1 uncharacterized protein LOC111009540 isoform X2 [Momordica charantia]8.9e-1158.11Show/hide
Query:  MVGKNAMTSDKGLVVDPPATQPLSPKSATEHLLLVEDSLGEVHSSVQTIHGLMENLSKHLENIAIEQERLCDDL
        M GK+ + + KG  VD    Q LSPKS T  LLL+EDSLGEV S+VQ IH L+ENL + LE I  EQERL  DL
Subjt:  MVGKNAMTSDKGLVVDPPATQPLSPKSATEHLLLVEDSLGEVHSSVQTIHGLMENLSKHLENIAIEQERLCDDL

TrEMBL top hitse value%identityAlignment
A0A5A7V462 Zf-CCHC domain-containing protein1.6e-0527.36Show/hide
Query:  GKNAMTSDKGLVVDPPATQPLSPKSATEHLLLVEDSLGEVHSSVQTIHGLMENLSKHLENIAIEQ--ERLCDDLDECGGVLELVKNVEFFLLHQYIERQK
        G N    D     +      LSP+++T  LL VEDSLG++H     +   +E L++ ++ +      E    +    GG     +  E        ER+ 
Subjt:  GKNAMTSDKGLVVDPPATQPLSPKSATEHLLLVEDSLGEVHSSVQTIHGLMENLSKHLENIAIEQ--ERLCDDLDECGGVLELVKNVEFFLLHQYIERQK

Query:  ----GRIGRLQAPVQYFDLVGS-KPTASDIGGASTSSGSKPTDTTSKT----------ITPIKTPNTTIRKGAT--TYARPNLGKCFRCAQQGHLSKECP
            G +G+    +    L  S +  A +   +   S  K TD    T          I        ++ +G T   Y RP+LGKCFRC +  HLS  CP
Subjt:  ----GRIGRLQAPVQYFDLVGS-KPTASDIGGASTSSGSKPTDTTSKT----------ITPIKTPNTTIRKGAT--TYARPNLGKCFRCAQQGHLSKECP

Query:  QCRTIAMMEKDD
        Q +TIA+ E +D
Subjt:  QCRTIAMMEKDD

A0A5D3D0X3 Zf-CCHC domain-containing protein2.7e-0526.42Show/hide
Query:  GKNAMTSDKGLVVDPPATQPLSPKSATEHLLLVEDSLGEVHSSVQTIHGLMENLSKHLENI---AIEQERLCDDLDECGGVLELVKNVEFFLLHQYIERQ
        G N    D     +      LSP+++T  LL VEDSLG++H     +   +E L++ ++ +   A  +    +D +  G   E   +       +   R 
Subjt:  GKNAMTSDKGLVVDPPATQPLSPKSATEHLLLVEDSLGEVHSSVQTIHGLMENLSKHLENI---AIEQERLCDDLDECGGVLELVKNVEFFLLHQYIERQ

Query:  KGRIGRLQAPVQYFDLV----GSKPTASDIGGASTSSGSKPTDTTSKT----------ITPIKTPNTTIRKGAT--TYARPNLGKCFRCAQQGHLSKECP
           +G +   V+   +V     ++  A +   +   S  K TD    T          I        ++ +G T   Y RP+LGKCFRC +  HLS  CP
Subjt:  KGRIGRLQAPVQYFDLV----GSKPTASDIGGASTSSGSKPTDTTSKT----------ITPIKTPNTTIRKGAT--TYARPNLGKCFRCAQQGHLSKECP

Query:  QCRTIAMMEKDD
        Q +TIA+ E +D
Subjt:  QCRTIAMMEKDD

A0A6J1CAS9 uncharacterized protein LOC111009540 isoform X14.8e-1046.43Show/hide
Query:  SKPTASDIG-----GASTSSGSKPTDTTSKTITPIKTPNTTIRKGATTYARPNLGKCFRCAQQGHLSKECPQCRTIAMMEKDDL
        SK   +D G     G +++S +KP D  +K+ +P KTP+T+ ++G   Y RP LGKCFRC Q  HLS ECPQ R +A++++DDL
Subjt:  SKPTASDIG-----GASTSSGSKPTDTTSKTITPIKTPNTTIRKGATTYARPNLGKCFRCAQQGHLSKECPQCRTIAMMEKDDL

A0A6J1CAS9 uncharacterized protein LOC111009540 isoform X19.3e-0630.11Show/hide
Query:  LSPKSATEHLLLVEDSLGEVHSSVQTIHGLMENLSKHLENIAIEQERLCDDLDECG--GVLELVKNV-----EFFLL---HQYIERQKGRIGRLQAPVQY
        LSP++ +  LL VE     + +++Q +   +E L+ H +   + QER+C D  +CG  G     + V     EF  L      +E ++  I R    ++ 
Subjt:  LSPKSATEHLLLVEDSLGEVHSSVQTIHGLMENLSKHLENIAIEQERLCDDLDECG--GVLELVKNV-----EFFLL---HQYIERQKGRIGRLQAPVQY

Query:  FDLVGSKPTASDIGGASTSSGS--KPTDTTSKTITPIKTPNTTIRKGA-TTYARPNLGKCFRCAQQGHLSKECPQCRTIAMMEKDD
         D+   K T       S+ S +   P    +K     K   T  +K A   Y RPNL KCF C Q  HLS  CP+ +T+A++E+D+
Subjt:  FDLVGSKPTASDIGGASTSSGS--KPTDTTSKTITPIKTPNTTIRKGA-TTYARPNLGKCFRCAQQGHLSKECPQCRTIAMMEKDD

A0A6J1CCQ8 uncharacterized protein LOC111009540 isoform X24.3e-1158.11Show/hide
Query:  MVGKNAMTSDKGLVVDPPATQPLSPKSATEHLLLVEDSLGEVHSSVQTIHGLMENLSKHLENIAIEQERLCDDL
        M GK+ + + KG  VD    Q LSPKS T  LLL+EDSLGEV S+VQ IH L+ENL + LE I  EQERL  DL
Subjt:  MVGKNAMTSDKGLVVDPPATQPLSPKSATEHLLLVEDSLGEVHSSVQTIHGLMENLSKHLENIAIEQERLCDDL

A0A6J1CCQ8 uncharacterized protein LOC111009540 isoform X24.8e-1046.43Show/hide
Query:  SKPTASDIG-----GASTSSGSKPTDTTSKTITPIKTPNTTIRKGATTYARPNLGKCFRCAQQGHLSKECPQCRTIAMMEKDDL
        SK   +D G     G +++S +KP D  +K+ +P KTP+T+ ++G   Y RP LGKCFRC Q  HLS ECPQ R +A++++DDL
Subjt:  SKPTASDIG-----GASTSSGSKPTDTTSKTITPIKTPNTTIRKGATTYARPNLGKCFRCAQQGHLSKECPQCRTIAMMEKDDL

A0A6J1CCQ8 uncharacterized protein LOC111009540 isoform X24.3e-1158.11Show/hide
Query:  MVGKNAMTSDKGLVVDPPATQPLSPKSATEHLLLVEDSLGEVHSSVQTIHGLMENLSKHLENIAIEQERLCDDL
        M GK+ + + KG  VD    Q LSPKS T  LLL+EDSLGEV S+VQ IH L+ENL + LE I  EQERL  DL
Subjt:  MVGKNAMTSDKGLVVDPPATQPLSPKSATEHLLLVEDSLGEVHSSVQTIHGLMENLSKHLENIAIEQERLCDDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGGGAAGAACGCAATGACTTCCGACAAGGGACTCGTGGTGGATCCTCCGGCAACTCAACCTCTGTCACCAAAATCTGCCACTGAACATTTACTGTTGGTG
GAGGATTCGCTGGGCGAGGTACATTCTAGTGTACAGACAATTCACGGACTGATGGAAAATCTTTCTAAACATCTGGAGAACATCGCAATTGAGCAAGAGCGGCTG
TGTGACGATCTGGATGAATGTGGAGGCGTTCTTGAACTAGTCAAGAATGTCGAATTTTTTTTACTACACCAATACATCGAAAGACAAAAAGGTCGAATTGGTCGC
CTTCAAGCTCCAGTCCAGTACTTCGACTTGGTGGGATCAAAACCAACCGCGTCTGACATTGGTGGTGCTTCTACTTCTTCCGGCTCCAAACCAACTGATACCACC
TCTAAGACTATTACACCAATTAAGACTCCTAACACTACCATCCGAAAAGGTGCTACCACGTATGCTCGACCAAATTTGGGTAAATGTTTTCGCTGTGCTCAGCAA
GGACATTTATCCAAAGAGTGTCCTCAATGCCGTACAATTGCTATGATGGAGAAGGACGATTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGGGAAGAACGCAATGACTTCCGACAAGGGACTCGTGGTGGATCCTCCGGCAACTCAACCTCTGTCACCAAAATCTGCCACTGAACATTTACTGTTGGTG
GAGGATTCGCTGGGCGAGGTACATTCTAGTGTACAGACAATTCACGGACTGATGGAAAATCTTTCTAAACATCTGGAGAACATCGCAATTGAGCAAGAGCGGCTG
TGTGACGATCTGGATGAATGTGGAGGCGTTCTTGAACTAGTCAAGAATGTCGAATTTTTTTTACTACACCAATACATCGAAAGACAAAAAGGTCGAATTGGTCGC
CTTCAAGCTCCAGTCCAGTACTTCGACTTGGTGGGATCAAAACCAACCGCGTCTGACATTGGTGGTGCTTCTACTTCTTCCGGCTCCAAACCAACTGATACCACC
TCTAAGACTATTACACCAATTAAGACTCCTAACACTACCATCCGAAAAGGTGCTACCACGTATGCTCGACCAAATTTGGGTAAATGTTTTCGCTGTGCTCAGCAA
GGACATTTATCCAAAGAGTGTCCTCAATGCCGTACAATTGCTATGATGGAGAAGGACGATTTGTAG
Protein sequenceShow/hide protein sequence
MVGKNAMTSDKGLVVDPPATQPLSPKSATEHLLLVEDSLGEVHSSVQTIHGLMENLSKHLENIAIEQERLCDDLDECGGVLELVKNVEFFLLHQYIERQKGRIGR
LQAPVQYFDLVGSKPTASDIGGASTSSGSKPTDTTSKTITPIKTPNTTIRKGATTYARPNLGKCFRCAQQGHLSKECPQCRTIAMMEKDDL