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Moc08g30350 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g30350
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr8:21761411..21763643
RNA-Seq ExpressionMoc08g30350
SyntenyMoc08g30350
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_017979699.1 PREDICTED: uncharacterized protein LOC108662712 [Theobroma cacao]8.4e-2452.83Show/hide
Query:  ALEYDPQLRSPTLPDNHSSRRQLKRVSFHPIPISYTELLSQLFQDNLLAPIPIEPLQPPYPKWYDPHVHCDYHAGAVGRSTENYTSLKHKVQVLMRAGWL
        A+ +D Q      P     +  L+R  F PIP+SYT LL QL ++ LLA  P++PL+PP+PKWYDP+ HCDYH G  G STEN T+LKHKVQ L++AG L
Subjt:  ALEYDPQLRSPTLPDNHSSRRQLKRVSFHPIPISYTELLSQLFQDNLLAPIPIEPLQPPYPKWYDPHVHCDYHAGAVGRSTENYTSLKHKVQVLMRAGWL

Query:  RFSKED
         F+K+D
Subjt:  RFSKED

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]5.2e-2655.79Show/hide
Query:  SSRRQLKRVSFHPIPISYTELLSQLFQDNLLAPIPIEPLQPPYPKWYDPHVHCDYHAGAVGRSTENYTSLKHKVQVLMRAGWLRFSKEDGPHMKR
        ++R   K+  F PIP++YTELL QLFQ+N LAP+P++P+QPPYP+WYD +  CDYHAGA+  STEN T LK++VQ L++AGW  F KE+G  + +
Subjt:  SSRRQLKRVSFHPIPISYTELLSQLFQDNLLAPIPIEPLQPPYPKWYDPHVHCDYHAGAVGRSTENYTSLKHKVQVLMRAGWLRFSKEDGPHMKR

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]4.0e-2658.76Show/hide
Query:  DNHSSRRQLKRVSFHPIPISYTELLSQLFQDNLLAPIPIEPLQPPYPKWYDPHVHCDYHAGAVGRSTENYTSLKHKVQVLMRAGWLRFSKEDGPHMK
        +N S+R+Q +   F PIP++YTELL QLFQ+N LAP+P++P+QPPYP WYD +  CDYHAGA+G STEN T+LK++VQ L++AG L F KE+ P +K
Subjt:  DNHSSRRQLKRVSFHPIPISYTELLSQLFQDNLLAPIPIEPLQPPYPKWYDPHVHCDYHAGAVGRSTENYTSLKHKVQVLMRAGWLRFSKEDGPHMK

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]8.6e-2957.14Show/hide
Query:  DNHSSRRQLKRVSFHPIPISYTELLSQLFQDNLLAPIPIEPLQPPYPKWYDPHVHCDYHAGAVGRSTENYTSLKHKVQVLMRAGWLRFSKEDGPHMKR
        +  ++R   K+  F PIP++YTELL QLFQ+N LAP+P++P+QPPYP+WYD +  CDYHAGA+G STEN T+LK++VQ L++AGWL F KE+GP + +
Subjt:  DNHSSRRQLKRVSFHPIPISYTELLSQLFQDNLLAPIPIEPLQPPYPKWYDPHVHCDYHAGAVGRSTENYTSLKHKVQVLMRAGWLRFSKEDGPHMKR

XP_031737553.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116402446 [Cucumis sativus]6.4e-2460Show/hide
Query:  DNHSSRRQLKRVSFHPIPISYTELLSQLFQDNLLAPIPIEPLQPPYPKWYDPHVHCDYHAGAVGRSTENYTSLKHKVQVLMRAGWLRFSK
        +N+ S+   +   F PIP++YTELL QL  +  LAPIPI P+QPPYPKWYDP+  CDYHAG VG STEN  +LK KVQ L+ AGWL F K
Subjt:  DNHSSRRQLKRVSFHPIPISYTELLSQLFQDNLLAPIPIEPLQPPYPKWYDPHVHCDYHAGAVGRSTENYTSLKHKVQVLMRAGWLRFSK

TrEMBL top hitse value%identityAlignment
A0A5A7V1X3 Uncharacterized protein9.0e-2463.53Show/hide
Query:  RRQLKRVSFHPIPISYTELLSQLFQDNLLAPIPIEPLQPPYPKWYDPHVHCDYHAGAVGRSTENYTSLKHKVQVLMRAGWLRFSK
        R   K+  F PIP+SYTELLSQL + + +A IP EPLQPPYPKWYDP+  C+YHAGA+G S ENY  LK KVQ L++AGWL+F K
Subjt:  RRQLKRVSFHPIPISYTELLSQLFQDNLLAPIPIEPLQPPYPKWYDPHVHCDYHAGAVGRSTENYTSLKHKVQVLMRAGWLRFSK

A0A5D3DEB3 Retrotrans_gag domain-containing protein6.9e-2445.03Show/hide
Query:  EFQFPRRKNKVQTIILKRKWKHQQRSTVYNPSTVPINSLALEY----DPQLRSPTLPDNHSSRRQLKRVS----FHPIPISYTELLSQLFQDNLLAPIPI
        E  FP    K ++I  +RK++    S + N S +P NS  L +     P+  +   P     R+  K  S    F PIP++YTELL QL Q+  LAPIP+
Subjt:  EFQFPRRKNKVQTIILKRKWKHQQRSTVYNPSTVPINSLALEY----DPQLRSPTLPDNHSSRRQLKRVS----FHPIPISYTELLSQLFQDNLLAPIPI

Query:  EPLQPPYPKWYDPHVHCDYHAGAVGRSTENYTSLKHKVQVLMRAGWLRFSK
         P++PPYPKW+D +  CDYHAG VG STEN  +LK KVQ L+ AGWL F K
Subjt:  EPLQPPYPKWYDPHVHCDYHAGAVGRSTENYTSLKHKVQVLMRAGWLRFSK

A0A6J1D099 Ribonuclease H2.5e-2655.79Show/hide
Query:  SSRRQLKRVSFHPIPISYTELLSQLFQDNLLAPIPIEPLQPPYPKWYDPHVHCDYHAGAVGRSTENYTSLKHKVQVLMRAGWLRFSKEDGPHMKR
        ++R   K+  F PIP++YTELL QLFQ+N LAP+P++P+QPPYP+WYD +  CDYHAGA+  STEN T LK++VQ L++AGW  F KE+G  + +
Subjt:  SSRRQLKRVSFHPIPISYTELLSQLFQDNLLAPIPIEPLQPPYPKWYDPHVHCDYHAGAVGRSTENYTSLKHKVQVLMRAGWLRFSKEDGPHMKR

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222311.9e-2658.76Show/hide
Query:  DNHSSRRQLKRVSFHPIPISYTELLSQLFQDNLLAPIPIEPLQPPYPKWYDPHVHCDYHAGAVGRSTENYTSLKHKVQVLMRAGWLRFSKEDGPHMK
        +N S+R+Q +   F PIP++YTELL QLFQ+N LAP+P++P+QPPYP WYD +  CDYHAGA+G STEN T+LK++VQ L++AG L F KE+ P +K
Subjt:  DNHSSRRQLKRVSFHPIPISYTELLSQLFQDNLLAPIPIEPLQPPYPKWYDPHVHCDYHAGAVGRSTENYTSLKHKVQVLMRAGWLRFSKEDGPHMK

A0A6J1E2J7 Ribonuclease H4.2e-2957.14Show/hide
Query:  DNHSSRRQLKRVSFHPIPISYTELLSQLFQDNLLAPIPIEPLQPPYPKWYDPHVHCDYHAGAVGRSTENYTSLKHKVQVLMRAGWLRFSKEDGPHMKR
        +  ++R   K+  F PIP++YTELL QLFQ+N LAP+P++P+QPPYP+WYD +  CDYHAGA+G STEN T+LK++VQ L++AGWL F KE+GP + +
Subjt:  DNHSSRRQLKRVSFHPIPISYTELLSQLFQDNLLAPIPIEPLQPPYPKWYDPHVHCDYHAGAVGRSTENYTSLKHKVQVLMRAGWLRFSKEDGPHMKR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATTTCACACACATCCACAGGCGTCCTACCCGGGCTTTACCTCTTAGGATTAGATCGGAGACTGATATTGTGACCTTCGTGGAATTTCAGTTCCCGCGTAGG
AAAAATAAAGTCCAGACAATAATCTTGAAGCGCAAGTGGAAGCACCAACAAAGATCTACGGTATACAATCCTTCTACAGTACCCATAAACTCATTAGCTCTAGAG
TATGACCCACAACTAAGATCGCCAACATTACCTGACAATCATAGTAGTCGGAGACAACTAAAGCGAGTGAGCTTTCATCCGATCCCAATATCCTATACCGAGTTG
TTATCCCAATTATTTCAAGATAATCTATTAGCTCCCATACCTATAGAACCATTACAACCACCTTATCCAAAGTGGTACGACCCGCATGTTCATTGTGATTACCAT
GCTGGAGCTGTAGGTCGTTCAACTGAGAACTATACTTCACTAAAGCATAAAGTGCAAGTTCTAATGAGGGCAGGGTGGCTTAGGTTTTCAAAGGAAGATGGTCCA
CACATGAAGCGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCATTTCACACACATCCACAGGCGTCCTACCCGGGCTTTACCTCTTAGGATTAGATCGGAGACTGATATTGTGACCTTCGTGGAATTTCAGTTCCCGCGTAGG
AAAAATAAAGTCCAGACAATAATCTTGAAGCGCAAGTGGAAGCACCAACAAAGATCTACGGTATACAATCCTTCTACAGTACCCATAAACTCATTAGCTCTAGAG
TATGACCCACAACTAAGATCGCCAACATTACCTGACAATCATAGTAGTCGGAGACAACTAAAGCGAGTGAGCTTTCATCCGATCCCAATATCCTATACCGAGTTG
TTATCCCAATTATTTCAAGATAATCTATTAGCTCCCATACCTATAGAACCATTACAACCACCTTATCCAAAGTGGTACGACCCGCATGTTCATTGTGATTACCAT
GCTGGAGCTGTAGGTCGTTCAACTGAGAACTATACTTCACTAAAGCATAAAGTGCAAGTTCTAATGAGGGCAGGGTGGCTTAGGTTTTCAAAGGAAGATGGTCCA
CACATGAAGCGCTAG
Protein sequenceShow/hide protein sequence
MHFTHIHRRPTRALPLRIRSETDIVTFVEFQFPRRKNKVQTIILKRKWKHQQRSTVYNPSTVPINSLALEYDPQLRSPTLPDNHSSRRQLKRVSFHPIPISYTEL
LSQLFQDNLLAPIPIEPLQPPYPKWYDPHVHCDYHAGAVGRSTENYTSLKHKVQVLMRAGWLRFSKEDGPHMKR