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Moc08g30410 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g30410
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr8:21789040..21790011
RNA-Seq ExpressionMoc08g30410
SyntenyMoc08g30410
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147761.1 uncharacterized protein LOC111016619 [Momordica charantia]2.1e-3779.81Show/hide
Query:  DQEFDPIDHLDAYREWADIYGITEAIRCRVFSFTLSGSVRNWFLQLKKKSISSFKELTRAFVTQFVGGQVRIKPVTYLLTIKQKAIESLKDYVARFNEEK
        D   DPIDHLD Y EW DIYGITEAIRCRVFSFTL+GS R WF QLK+KSISSFKEL RAFVTQF GG  R +PV YLLTIKQKA ESLKDYVARFN+EK
Subjt:  DQEFDPIDHLDAYREWADIYGITEAIRCRVFSFTLSGSVRNWFLQLKKKSISSFKELTRAFVTQFVGGQVRIKPVTYLLTIKQKAIESLKDYVARFNEEK

Query:  LQVK
        LQV+
Subjt:  LQVK

XP_022150035.1 uncharacterized protein LOC111018307 [Momordica charantia]6.4e-3472.12Show/hide
Query:  DQEFDPIDHLDAYREWADIYGITEAIRCRVFSFTLSGSVRNWFLQLKKKSISSFKELTRAFVTQFVGGQVRIKPVTYLLTIKQKAIESLKDYVARFNEEK
        D   D +DHLDAYREW DIYG++EA++CRVFS TLSGS R WF QLK+ SISSFK L +AFVTQF+GG+ R +PV YLLTIKQ+A ESL DYVARFNEEK
Subjt:  DQEFDPIDHLDAYREWADIYGITEAIRCRVFSFTLSGSVRNWFLQLKKKSISSFKELTRAFVTQFVGGQVRIKPVTYLLTIKQKAIESLKDYVARFNEEK

Query:  LQVK
        LQV+
Subjt:  LQVK

XP_022158344.1 uncharacterized protein LOC111024851 [Momordica charantia]1.7e-3982.69Show/hide
Query:  DQEFDPIDHLDAYREWADIYGITEAIRCRVFSFTLSGSVRNWFLQLKKKSISSFKELTRAFVTQFVGGQVRIKPVTYLLTIKQKAIESLKDYVARFNEEK
        D   DPIDHLDAYREWADIY I EAIRCRVFSFTL+GS RNWF QLK+ SISSFKEL  AFVTQFVGG+V+ KPVTYLLTIKQKA ESLK+YVARFNEEK
Subjt:  DQEFDPIDHLDAYREWADIYGITEAIRCRVFSFTLSGSVRNWFLQLKKKSISSFKELTRAFVTQFVGGQVRIKPVTYLLTIKQKAIESLKDYVARFNEEK

Query:  LQVK
        LQV+
Subjt:  LQVK

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]1.2e-4340.25Show/hide
Query:  LRPRQSKERLTDQFLDRRILTDQFSDQQI--PIEGLDKLGDKMTALEEKVEGMHRSMSLL----LQK----LEQHEMEQPAFVRDPRKGKAPMTEEVVET
        + P +S  R  D    +R L     D Q+  P +G  +        +E+ EG+    +L      QK    LE  E ++   VRDP+KGK P   +  E+
Subjt:  LRPRQSKERLTDQFLDRRILTDQFSDQQI--PIEGLDKLGDKMTALEEKVEGMHRSMSLL----LQK----LEQHEMEQPAFVRDPRKGKAPMTEEVVET

Query:  TNHAWSKLKIGRNDKSRTNVPGRSGWQANVRQQRFVAPNENKSNPVDGAGLWHTTVDRRRPSGQTVGSEIRSGGHQDQEF--------------------
        TN   SKL+IG N + RT +      +   +Q +  APN  KS+  D       ++D+ +P+ +   SE R   H+++ F                    
Subjt:  TNHAWSKLKIGRNDKSRTNVPGRSGWQANVRQQRFVAPNENKSNPVDGAGLWHTTVDRRRPSGQTVGSEIRSGGHQDQEF--------------------

Query:  ------------------DPIDHLDAYREWADIYGITEAIRCRVFSFTLSGSVRNWFLQLKKKSISSFKELTRAFVTQFVGGQVRIKPVTYLLTIKQKAI
                          DP+DHLDAYREW DIYG++EA+RCRVFS TL+GS R WF QLK+ SISSFK L RAFVTQFVGG+ R +PV YLLTIKQ+  
Subjt:  ------------------DPIDHLDAYREWADIYGITEAIRCRVFSFTLSGSVRNWFLQLKKKSISSFKELTRAFVTQFVGGQVRIKPVTYLLTIKQKAI

Query:  ESLKDYVARFNEEKLQVK
        ESL+DYVARFNEEKLQV+
Subjt:  ESLKDYVARFNEEKLQVK

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]1.1e-3373Show/hide
Query:  DPIDHLDAYREWADIYGITEAIRCRVFSFTLSGSVRNWFLQLKKKSISSFKELTRAFVTQFVGGQVRIKPVTYLLTIKQKAIESLKDYVARFNEEKLQVK
        +P+DHLDAYREW DIYG+++AIRCRVFS TL+GS R WF QLK+ SISSFK L RAF+TQFVGG+ R +PV YLLTIKQ+  ESL DYVARFNEEKLQ++
Subjt:  DPIDHLDAYREWADIYGITEAIRCRVFSFTLSGSVRNWFLQLKKKSISSFKELTRAFVTQFVGGQVRIKPVTYLLTIKQKAIESLKDYVARFNEEKLQVK

TrEMBL top hitse value%identityAlignment
A0A6J1D3B7 uncharacterized protein LOC1110166191.0e-3779.81Show/hide
Query:  DQEFDPIDHLDAYREWADIYGITEAIRCRVFSFTLSGSVRNWFLQLKKKSISSFKELTRAFVTQFVGGQVRIKPVTYLLTIKQKAIESLKDYVARFNEEK
        D   DPIDHLD Y EW DIYGITEAIRCRVFSFTL+GS R WF QLK+KSISSFKEL RAFVTQF GG  R +PV YLLTIKQKA ESLKDYVARFN+EK
Subjt:  DQEFDPIDHLDAYREWADIYGITEAIRCRVFSFTLSGSVRNWFLQLKKKSISSFKELTRAFVTQFVGGQVRIKPVTYLLTIKQKAIESLKDYVARFNEEK

Query:  LQVK
        LQV+
Subjt:  LQVK

A0A6J1D7D2 uncharacterized protein LOC1110183073.1e-3472.12Show/hide
Query:  DQEFDPIDHLDAYREWADIYGITEAIRCRVFSFTLSGSVRNWFLQLKKKSISSFKELTRAFVTQFVGGQVRIKPVTYLLTIKQKAIESLKDYVARFNEEK
        D   D +DHLDAYREW DIYG++EA++CRVFS TLSGS R WF QLK+ SISSFK L +AFVTQF+GG+ R +PV YLLTIKQ+A ESL DYVARFNEEK
Subjt:  DQEFDPIDHLDAYREWADIYGITEAIRCRVFSFTLSGSVRNWFLQLKKKSISSFKELTRAFVTQFVGGQVRIKPVTYLLTIKQKAIESLKDYVARFNEEK

Query:  LQVK
        LQV+
Subjt:  LQVK

A0A6J1DWY0 uncharacterized protein LOC1110252935.6e-4440.25Show/hide
Query:  LRPRQSKERLTDQFLDRRILTDQFSDQQI--PIEGLDKLGDKMTALEEKVEGMHRSMSLL----LQK----LEQHEMEQPAFVRDPRKGKAPMTEEVVET
        + P +S  R  D    +R L     D Q+  P +G  +        +E+ EG+    +L      QK    LE  E ++   VRDP+KGK P   +  E+
Subjt:  LRPRQSKERLTDQFLDRRILTDQFSDQQI--PIEGLDKLGDKMTALEEKVEGMHRSMSLL----LQK----LEQHEMEQPAFVRDPRKGKAPMTEEVVET

Query:  TNHAWSKLKIGRNDKSRTNVPGRSGWQANVRQQRFVAPNENKSNPVDGAGLWHTTVDRRRPSGQTVGSEIRSGGHQDQEF--------------------
        TN   SKL+IG N + RT +      +   +Q +  APN  KS+  D       ++D+ +P+ +   SE R   H+++ F                    
Subjt:  TNHAWSKLKIGRNDKSRTNVPGRSGWQANVRQQRFVAPNENKSNPVDGAGLWHTTVDRRRPSGQTVGSEIRSGGHQDQEF--------------------

Query:  ------------------DPIDHLDAYREWADIYGITEAIRCRVFSFTLSGSVRNWFLQLKKKSISSFKELTRAFVTQFVGGQVRIKPVTYLLTIKQKAI
                          DP+DHLDAYREW DIYG++EA+RCRVFS TL+GS R WF QLK+ SISSFK L RAFVTQFVGG+ R +PV YLLTIKQ+  
Subjt:  ------------------DPIDHLDAYREWADIYGITEAIRCRVFSFTLSGSVRNWFLQLKKKSISSFKELTRAFVTQFVGGQVRIKPVTYLLTIKQKAI

Query:  ESLKDYVARFNEEKLQVK
        ESL+DYVARFNEEKLQV+
Subjt:  ESLKDYVARFNEEKLQVK

A0A6J1DZ49 uncharacterized protein LOC1110248518.4e-4082.69Show/hide
Query:  DQEFDPIDHLDAYREWADIYGITEAIRCRVFSFTLSGSVRNWFLQLKKKSISSFKELTRAFVTQFVGGQVRIKPVTYLLTIKQKAIESLKDYVARFNEEK
        D   DPIDHLDAYREWADIY I EAIRCRVFSFTL+GS RNWF QLK+ SISSFKEL  AFVTQFVGG+V+ KPVTYLLTIKQKA ESLK+YVARFNEEK
Subjt:  DQEFDPIDHLDAYREWADIYGITEAIRCRVFSFTLSGSVRNWFLQLKKKSISSFKELTRAFVTQFVGGQVRIKPVTYLLTIKQKAIESLKDYVARFNEEK

Query:  LQVK
        LQV+
Subjt:  LQVK

A0A6J1E1E7 uncharacterized protein LOC1110255485.3e-3473Show/hide
Query:  DPIDHLDAYREWADIYGITEAIRCRVFSFTLSGSVRNWFLQLKKKSISSFKELTRAFVTQFVGGQVRIKPVTYLLTIKQKAIESLKDYVARFNEEKLQVK
        +P+DHLDAYREW DIYG+++AIRCRVFS TL+GS R WF QLK+ SISSFK L RAF+TQFVGG+ R +PV YLLTIKQ+  ESL DYVARFNEEKLQ++
Subjt:  DPIDHLDAYREWADIYGITEAIRCRVFSFTLSGSVRNWFLQLKKKSISSFKELTRAFVTQFVGGQVRIKPVTYLLTIKQKAIESLKDYVARFNEEKLQVK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAGTGCCACCACAAGAGGAAGGTTAAGAGGGACACATCTCCGCCCGAGGCAATCAAAAGAGAGATTGACCGACCAGTTCTTGGATCGACGGATACTGACT
GACCAGTTCTCGGACCAACAGATACCGATCGAAGGTCTGGATAAACTGGGCGACAAGATGACTGCTTTAGAAGAGAAGGTAGAAGGAATGCACCGGAGCATGTCT
CTACTTCTGCAAAAACTCGAGCAACATGAGATGGAACAACCAGCGTTTGTTCGTGATCCACGAAAGGGTAAAGCTCCGATGACTGAAGAAGTTGTGGAGACAACC
AACCATGCATGGAGCAAACTGAAGATAGGAAGAAACGACAAATCTCGAACCAATGTTCCCGGCCGGTCAGGGTGGCAAGCAAATGTACGACAACAGAGGTTTGTC
GCGCCCAACGAAAACAAGAGCAACCCAGTTGATGGAGCCGGCCTCTGGCATACTACTGTCGACAGAAGAAGGCCATCCGGTCAGACTGTGGGATCAGAGATACGA
TCAGGAGGACACCAAGACCAGGAGTTTGATCCCATAGATCACCTTGATGCGTATCGAGAATGGGCAGACATCTACGGCATAACAGAAGCCATTAGATGCAGAGTG
TTTTCTTTTACTTTGTCTGGCTCGGTGCGTAATTGGTTCCTACAATTGAAAAAAAAGTCGATCTCAAGCTTCAAGGAATTGACGAGGGCATTTGTCACTCAATTC
GTCGGAGGGCAGGTCAGAATCAAACCAGTAACGTACCTACTGACTATCAAGCAAAAGGCGATAGAGAGTCTCAAAGATTATGTAGCTCGGTTCAATGAAGAGAAG
CTACAAGTGAAGGTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAGTGCCACCACAAGAGGAAGGTTAAGAGGGACACATCTCCGCCCGAGGCAATCAAAAGAGAGATTGACCGACCAGTTCTTGGATCGACGGATACTGACT
GACCAGTTCTCGGACCAACAGATACCGATCGAAGGTCTGGATAAACTGGGCGACAAGATGACTGCTTTAGAAGAGAAGGTAGAAGGAATGCACCGGAGCATGTCT
CTACTTCTGCAAAAACTCGAGCAACATGAGATGGAACAACCAGCGTTTGTTCGTGATCCACGAAAGGGTAAAGCTCCGATGACTGAAGAAGTTGTGGAGACAACC
AACCATGCATGGAGCAAACTGAAGATAGGAAGAAACGACAAATCTCGAACCAATGTTCCCGGCCGGTCAGGGTGGCAAGCAAATGTACGACAACAGAGGTTTGTC
GCGCCCAACGAAAACAAGAGCAACCCAGTTGATGGAGCCGGCCTCTGGCATACTACTGTCGACAGAAGAAGGCCATCCGGTCAGACTGTGGGATCAGAGATACGA
TCAGGAGGACACCAAGACCAGGAGTTTGATCCCATAGATCACCTTGATGCGTATCGAGAATGGGCAGACATCTACGGCATAACAGAAGCCATTAGATGCAGAGTG
TTTTCTTTTACTTTGTCTGGCTCGGTGCGTAATTGGTTCCTACAATTGAAAAAAAAGTCGATCTCAAGCTTCAAGGAATTGACGAGGGCATTTGTCACTCAATTC
GTCGGAGGGCAGGTCAGAATCAAACCAGTAACGTACCTACTGACTATCAAGCAAAAGGCGATAGAGAGTCTCAAAGATTATGTAGCTCGGTTCAATGAAGAGAAG
CTACAAGTGAAGGTCTGA
Protein sequenceShow/hide protein sequence
MKSATTRGRLRGTHLRPRQSKERLTDQFLDRRILTDQFSDQQIPIEGLDKLGDKMTALEEKVEGMHRSMSLLLQKLEQHEMEQPAFVRDPRKGKAPMTEEVVETT
NHAWSKLKIGRNDKSRTNVPGRSGWQANVRQQRFVAPNENKSNPVDGAGLWHTTVDRRRPSGQTVGSEIRSGGHQDQEFDPIDHLDAYREWADIYGITEAIRCRV
FSFTLSGSVRNWFLQLKKKSISSFKELTRAFVTQFVGGQVRIKPVTYLLTIKQKAIESLKDYVARFNEEKLQVKV