; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc08g30680 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g30680
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr8:21978689..21979404
RNA-Seq ExpressionMoc08g30680
SyntenyMoc08g30680
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022141216.1 uncharacterized protein LOC111011669 [Momordica charantia]6.2e-2454.74Show/hide
Query:  MARNSSSSCFYKSVSNSSSHSKKKDKPFCTHCGLTGHTVDRCYKLHGYPPGYR-TSGSRNNSSQNK-SATDSSKPIDSSTSSNLPDSLTSLSVDQCQGLL
        +AR S+SS    + + +SS  ++K++P+CTHC L GHTVDRCYKLHGYPPG+R TS S N+SS++   AT+ S    S  SS+  DSL++   DQ QGLL
Subjt:  MARNSSSSCFYKSVSNSSSHSKKKDKPFCTHCGLTGHTVDRCYKLHGYPPGYR-TSGSRNNSSQNK-SATDSSKPIDSSTSSNLPDSLTSLSVDQCQGLL

Query:  FLLQSHLTKVNSGPTAD---SVQSHVAGQVLFEDDWQ
          LQSHL  +   PT+D   S  SHVAGQVLFEDDWQ
Subjt:  FLLQSHLTKVNSGPTAD---SVQSHVAGQVLFEDDWQ

XP_022148562.1 uncharacterized protein LOC111017196 [Momordica charantia]1.3e-2451.94Show/hide
Query:  NSSSSCFYKSVSNSSSHSKKKDKPFCTHCGLTGHTVDRCYKLHGYPPGYRTSGSRNNSSQNKSATDSSKPIDSSTSSNLPDSLTSLSVDQCQGLLFLLQS
        ++SS+   +S+SN     K+K+K  CTHC L  HTVDRCYKLHGYPPGYR S +R   +    A   S    S  ++ +PDSL+ ++ DQC GL  +LQS
Subjt:  NSSSSCFYKSVSNSSSHSKKKDKPFCTHCGLTGHTVDRCYKLHGYPPGYRTSGSRNNSSQNKSATDSSKPIDSSTSSNLPDSLTSLSVDQCQGLLFLLQS

Query:  HLTKVNSGPTADSVQSHVAGQVLFEDDWQ
        HL KV +G  ++S  SHVAGQVLFEDDWQ
Subjt:  HLTKVNSGPTADSVQSHVAGQVLFEDDWQ

XP_022150305.1 uncharacterized protein LOC111018505 [Momordica charantia]1.3e-66100Show/hide
Query:  MARNSSSSCFYKSVSNSSSHSKKKDKPFCTHCGLTGHTVDRCYKLHGYPPGYRTSGSRNNSSQNKSATDSSKPIDSSTSSNLPDSLTSLSVDQCQGLLFL
        MARNSSSSCFYKSVSNSSSHSKKKDKPFCTHCGLTGHTVDRCYKLHGYPPGYRTSGSRNNSSQNKSATDSSKPIDSSTSSNLPDSLTSLSVDQCQGLLFL
Subjt:  MARNSSSSCFYKSVSNSSSHSKKKDKPFCTHCGLTGHTVDRCYKLHGYPPGYRTSGSRNNSSQNKSATDSSKPIDSSTSSNLPDSLTSLSVDQCQGLLFL

Query:  LQSHLTKVNSGPTADSVQSHVAGQVLFEDDWQS
        LQSHLTKVNSGPTADSVQSHVAGQVLFEDDWQS
Subjt:  LQSHLTKVNSGPTADSVQSHVAGQVLFEDDWQS

XP_022154919.1 uncharacterized protein LOC111022065 [Momordica charantia]5.4e-2051.22Show/hide
Query:  RNSSSSCFYKSVSNSSSHSKKKDKPFCTHCGLTGHTVDRCYKLHGYPPGYRTS---GSRNNSSQNKSATDSSKPIDSSTSSNLPDSLTSLSVDQCQGLLF
        R +S+S   +  S+S+SH K+KDK  CTHCG+ GHTVD+CYKLH YPPGYR+S    + +N++ ++SA   SK + S+T S + +SL +L+ DQCQ LL 
Subjt:  RNSSSSCFYKSVSNSSSHSKKKDKPFCTHCGLTGHTVDRCYKLHGYPPGYRTS---GSRNNSSQNKSATDSSKPIDSSTSSNLPDSLTSLSVDQCQGLLF

Query:  LLQSHLTKVNSGPTADSVQSHVA
        LLQSHLT   +    DS  SHVA
Subjt:  LLQSHLTKVNSGPTADSVQSHVA

XP_022158788.1 uncharacterized protein LOC111025254 [Momordica charantia]4.8e-2452.55Show/hide
Query:  MARNSS--SSCFYKSVSNSSSHSKKKDKPFCTHCGLTGHTVDRCYKLHGYPPGYRTSGSR---NNSSQNKSATDSSKPIDSSTSSNLPDSLTSLSVDQCQ
        + RN+S  SS    S ++S S + KKDKP CTHCG+ GHT D+CY+LHGYPPG+R  G +   +NSS ++S ++S K   SS SSN  DSL S + DQCQ
Subjt:  MARNSS--SSCFYKSVSNSSSHSKKKDKPFCTHCGLTGHTVDRCYKLHGYPPGYRTSGSR---NNSSQNKSATDSSKPIDSSTSSNLPDSLTSLSVDQCQ

Query:  GLLFLLQSHLTKVNSGPTADSVQSHVAGQVLFEDDWQ
        GLL LL SHL+ V      DS   HVAG V FE+ WQ
Subjt:  GLLFLLQSHLTKVNSGPTADSVQSHVAGQVLFEDDWQ

TrEMBL top hitse value%identityAlignment
A0A6J1CIG1 uncharacterized protein LOC1110116693.0e-2454.74Show/hide
Query:  MARNSSSSCFYKSVSNSSSHSKKKDKPFCTHCGLTGHTVDRCYKLHGYPPGYR-TSGSRNNSSQNK-SATDSSKPIDSSTSSNLPDSLTSLSVDQCQGLL
        +AR S+SS    + + +SS  ++K++P+CTHC L GHTVDRCYKLHGYPPG+R TS S N+SS++   AT+ S    S  SS+  DSL++   DQ QGLL
Subjt:  MARNSSSSCFYKSVSNSSSHSKKKDKPFCTHCGLTGHTVDRCYKLHGYPPGYR-TSGSRNNSSQNK-SATDSSKPIDSSTSSNLPDSLTSLSVDQCQGLL

Query:  FLLQSHLTKVNSGPTAD---SVQSHVAGQVLFEDDWQ
          LQSHL  +   PT+D   S  SHVAGQVLFEDDWQ
Subjt:  FLLQSHLTKVNSGPTAD---SVQSHVAGQVLFEDDWQ

A0A6J1D5E3 uncharacterized protein LOC1110171966.1e-2551.94Show/hide
Query:  NSSSSCFYKSVSNSSSHSKKKDKPFCTHCGLTGHTVDRCYKLHGYPPGYRTSGSRNNSSQNKSATDSSKPIDSSTSSNLPDSLTSLSVDQCQGLLFLLQS
        ++SS+   +S+SN     K+K+K  CTHC L  HTVDRCYKLHGYPPGYR S +R   +    A   S    S  ++ +PDSL+ ++ DQC GL  +LQS
Subjt:  NSSSSCFYKSVSNSSSHSKKKDKPFCTHCGLTGHTVDRCYKLHGYPPGYRTSGSRNNSSQNKSATDSSKPIDSSTSSNLPDSLTSLSVDQCQGLLFLLQS

Query:  HLTKVNSGPTADSVQSHVAGQVLFEDDWQ
        HL KV +G  ++S  SHVAGQVLFEDDWQ
Subjt:  HLTKVNSGPTADSVQSHVAGQVLFEDDWQ

A0A6J1D849 uncharacterized protein LOC1110185056.4e-67100Show/hide
Query:  MARNSSSSCFYKSVSNSSSHSKKKDKPFCTHCGLTGHTVDRCYKLHGYPPGYRTSGSRNNSSQNKSATDSSKPIDSSTSSNLPDSLTSLSVDQCQGLLFL
        MARNSSSSCFYKSVSNSSSHSKKKDKPFCTHCGLTGHTVDRCYKLHGYPPGYRTSGSRNNSSQNKSATDSSKPIDSSTSSNLPDSLTSLSVDQCQGLLFL
Subjt:  MARNSSSSCFYKSVSNSSSHSKKKDKPFCTHCGLTGHTVDRCYKLHGYPPGYRTSGSRNNSSQNKSATDSSKPIDSSTSSNLPDSLTSLSVDQCQGLLFL

Query:  LQSHLTKVNSGPTADSVQSHVAGQVLFEDDWQS
        LQSHLTKVNSGPTADSVQSHVAGQVLFEDDWQS
Subjt:  LQSHLTKVNSGPTADSVQSHVAGQVLFEDDWQS

A0A6J1DNP7 uncharacterized protein LOC1110220652.6e-2051.22Show/hide
Query:  RNSSSSCFYKSVSNSSSHSKKKDKPFCTHCGLTGHTVDRCYKLHGYPPGYRTS---GSRNNSSQNKSATDSSKPIDSSTSSNLPDSLTSLSVDQCQGLLF
        R +S+S   +  S+S+SH K+KDK  CTHCG+ GHTVD+CYKLH YPPGYR+S    + +N++ ++SA   SK + S+T S + +SL +L+ DQCQ LL 
Subjt:  RNSSSSCFYKSVSNSSSHSKKKDKPFCTHCGLTGHTVDRCYKLHGYPPGYRTS---GSRNNSSQNKSATDSSKPIDSSTSSNLPDSLTSLSVDQCQGLLF

Query:  LLQSHLTKVNSGPTADSVQSHVA
        LLQSHLT   +    DS  SHVA
Subjt:  LLQSHLTKVNSGPTADSVQSHVA

A0A6J1DX32 uncharacterized protein LOC1110252542.3e-2452.55Show/hide
Query:  MARNSS--SSCFYKSVSNSSSHSKKKDKPFCTHCGLTGHTVDRCYKLHGYPPGYRTSGSR---NNSSQNKSATDSSKPIDSSTSSNLPDSLTSLSVDQCQ
        + RN+S  SS    S ++S S + KKDKP CTHCG+ GHT D+CY+LHGYPPG+R  G +   +NSS ++S ++S K   SS SSN  DSL S + DQCQ
Subjt:  MARNSS--SSCFYKSVSNSSSHSKKKDKPFCTHCGLTGHTVDRCYKLHGYPPGYRTSGSR---NNSSQNKSATDSSKPIDSSTSSNLPDSLTSLSVDQCQ

Query:  GLLFLLQSHLTKVNSGPTADSVQSHVAGQVLFEDDWQ
        GLL LL SHL+ V      DS   HVAG V FE+ WQ
Subjt:  GLLFLLQSHLTKVNSGPTADSVQSHVAGQVLFEDDWQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCGGAATTCTTCCTCCTCTTGTTTTTATAAGTCGGTTTCTAATTCTTCTTCACATTCCAAGAAGAAAGACAAGCCTTTTTGCACACATTGCGGTCTCACTGGCCA
CACTGTTGATAGGTGTTACAAGTTGCACGGGTATCCCCCTGGATACCGCACTTCGGGCTCTCGCAACAATTCTTCTCAAAATAAGTCTGCTACTGATTCCTCGAAGCCGA
TTGATTCTTCTACCTCTTCGAATCTTCCTGATTCGTTGACGTCTCTTAGTGTTGATCAGTGTCAAGGGCTATTATTCCTTCTTCAATCTCATTTGACCAAGGTTAATTCT
GGTCCCACGGCAGATTCTGTTCAATCTCATGTTGCAGGACAAGTCCTTTTCGAAGATGATTGGCAAAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCGGAATTCTTCCTCCTCTTGTTTTTATAAGTCGGTTTCTAATTCTTCTTCACATTCCAAGAAGAAAGACAAGCCTTTTTGCACACATTGCGGTCTCACTGGCCA
CACTGTTGATAGGTGTTACAAGTTGCACGGGTATCCCCCTGGATACCGCACTTCGGGCTCTCGCAACAATTCTTCTCAAAATAAGTCTGCTACTGATTCCTCGAAGCCGA
TTGATTCTTCTACCTCTTCGAATCTTCCTGATTCGTTGACGTCTCTTAGTGTTGATCAGTGTCAAGGGCTATTATTCCTTCTTCAATCTCATTTGACCAAGGTTAATTCT
GGTCCCACGGCAGATTCTGTTCAATCTCATGTTGCAGGACAAGTCCTTTTCGAAGATGATTGGCAAAGCTGA
Protein sequenceShow/hide protein sequence
MARNSSSSCFYKSVSNSSSHSKKKDKPFCTHCGLTGHTVDRCYKLHGYPPGYRTSGSRNNSSQNKSATDSSKPIDSSTSSNLPDSLTSLSVDQCQGLLFLLQSHLTKVNS
GPTADSVQSHVAGQVLFEDDWQS