CuGenDBv2

Gene ID	Moc08g31260
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	RNase H domain-containing protein
Genome location	chr8:22403150..22405295
RNA-Seq Expression	Moc08g31260
Synteny	Moc08g31260
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008465682.1 PREDICTED: uncharacterized protein LOC103503315 isoform X1 [Cucumis melo]

6.4e-29

57.35

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Query:  MNCFSQLFTYTRAILRRTS-VFLPTTSINGYSNPYWRSSFHNAALNVAALDSVCSRFHMRCYSS---RKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKG
        MNC SQ+ TYTR I RRT+ VF  +TSI+G SNPYW S+FHN A+   ALDS+CSRF +RCYS+   RK  K  S S KLD++P  ME E GDFFVVRKG
Subjt:  MNCFSQLFTYTRAILRRTS-VFLPTTSINGYSNPYWRSSFHNAALNVAALDSVCSRFHMRCYSS---RKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKG

Query:  DVVGVYKNFSDSRSQLEFQLDEL-------RSTPKD
        DVVGVYK+FSD  +Q+   + +L        S PKD
Subjt:  DVVGVYKNFSDSRSQLEFQLDEL-------RSTPKD

XP_008465684.1 PREDICTED: uncharacterized protein LOC103503315 isoform X3 [Cucumis melo]

6.4e-29

57.35

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Query:  MNCFSQLFTYTRAILRRTS-VFLPTTSINGYSNPYWRSSFHNAALNVAALDSVCSRFHMRCYSS---RKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKG
        MNC SQ+ TYTR I RRT+ VF  +TSI+G SNPYW S+FHN A+   ALDS+CSRF +RCYS+   RK  K  S S KLD++P  ME E GDFFVVRKG
Subjt:  MNCFSQLFTYTRAILRRTS-VFLPTTSINGYSNPYWRSSFHNAALNVAALDSVCSRFHMRCYSS---RKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKG

Query:  DVVGVYKNFSDSRSQLEFQLDEL-------RSTPKD
        DVVGVYK+FSD  +Q+   + +L        S PKD
Subjt:  DVVGVYKNFSDSRSQLEFQLDEL-------RSTPKD

XP_008465685.1 PREDICTED: uncharacterized protein LOC103503315 isoform X4 [Cucumis melo]

6.4e-29

57.35

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Query:  MNCFSQLFTYTRAILRRTS-VFLPTTSINGYSNPYWRSSFHNAALNVAALDSVCSRFHMRCYSS---RKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKG
        MNC SQ+ TYTR I RRT+ VF  +TSI+G SNPYW S+FHN A+   ALDS+CSRF +RCYS+   RK  K  S S KLD++P  ME E GDFFVVRKG
Subjt:  MNCFSQLFTYTRAILRRTS-VFLPTTSINGYSNPYWRSSFHNAALNVAALDSVCSRFHMRCYSS---RKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKG

Query:  DVVGVYKNFSDSRSQLEFQLDEL-------RSTPKD
        DVVGVYK+FSD  +Q+   + +L        S PKD
Subjt:  DVVGVYKNFSDSRSQLEFQLDEL-------RSTPKD

XP_023547239.1 uncharacterized protein LOC111806115 [Cucurbita pepo subsp. pepo]

1.7e-29

57.46

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Query:  MNCFSQLFTYTRAILRRTSV-FLPTTSINGYS-NPYWRSSFHNAALNVAALDSVCSRFHMRCYSSRKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKGDV
        MNCFSQ  TYTRAI R T++ F  +TSI+G   NPYW SSFH+  L    LDS+CSRF +RCYSSRK+ KG S S  LD+KP  MEP+ GDFFVVRKGDV
Subjt:  MNCFSQLFTYTRAILRRTSV-FLPTTSINGYS-NPYWRSSFHNAALNVAALDSVCSRFHMRCYSSRKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKGDV

Query:  VGVYKNFSDSRSQLEFQLDEL-------RSTPKD
        VGVYK+F+D ++Q+   + +L        S PKD
Subjt:  VGVYKNFSDSRSQLEFQLDEL-------RSTPKD

XP_038889960.1 uncharacterized protein LOC120079705 [Benincasa hispida]

8.9e-31

57.46

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Query:  MNCFSQLFTYTRAILRRTSVFLPTTSINGYSNPYWRSSF--HNAALNVAALDSVCSRFHMRCYSSRKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKGDV
        MNCFSQ+ TYTRAI RRT++ + +TSINGYSN YW SSF  HN A+   A+DS+CSRF +RCYSSRK+ K  S S KLD++P + E E GDFFVVRKGD+
Subjt:  MNCFSQLFTYTRAILRRTSVFLPTTSINGYSNPYWRSSF--HNAALNVAALDSVCSRFHMRCYSSRKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKGDV

Query:  VGVYKNFSDSRSQLEFQLDEL-------RSTPKD
        +GVYK+FSD ++Q+   + +L        S PKD
Subjt:  VGVYKNFSDSRSQLEFQLDEL-------RSTPKD

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CPE1 uncharacterized protein LOC103503315 isoform X4

3.1e-29

57.35

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Query:  MNCFSQLFTYTRAILRRTS-VFLPTTSINGYSNPYWRSSFHNAALNVAALDSVCSRFHMRCYSS---RKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKG
        MNC SQ+ TYTR I RRT+ VF  +TSI+G SNPYW S+FHN A+   ALDS+CSRF +RCYS+   RK  K  S S KLD++P  ME E GDFFVVRKG
Subjt:  MNCFSQLFTYTRAILRRTS-VFLPTTSINGYSNPYWRSSFHNAALNVAALDSVCSRFHMRCYSS---RKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKG

Query:  DVVGVYKNFSDSRSQLEFQLDEL-------RSTPKD
        DVVGVYK+FSD  +Q+   + +L        S PKD
Subjt:  DVVGVYKNFSDSRSQLEFQLDEL-------RSTPKD

A0A1S3CPG2 uncharacterized protein LOC103503315 isoform X3

3.1e-29

57.35

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Query:  MNCFSQLFTYTRAILRRTS-VFLPTTSINGYSNPYWRSSFHNAALNVAALDSVCSRFHMRCYSS---RKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKG
        MNC SQ+ TYTR I RRT+ VF  +TSI+G SNPYW S+FHN A+   ALDS+CSRF +RCYS+   RK  K  S S KLD++P  ME E GDFFVVRKG
Subjt:  MNCFSQLFTYTRAILRRTS-VFLPTTSINGYSNPYWRSSFHNAALNVAALDSVCSRFHMRCYSS---RKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKG

Query:  DVVGVYKNFSDSRSQLEFQLDEL-------RSTPKD
        DVVGVYK+FSD  +Q+   + +L        S PKD
Subjt:  DVVGVYKNFSDSRSQLEFQLDEL-------RSTPKD

A0A1S3CPT7 uncharacterized protein LOC103503315 isoform X1

3.1e-29

57.35

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Query:  MNCFSQLFTYTRAILRRTS-VFLPTTSINGYSNPYWRSSFHNAALNVAALDSVCSRFHMRCYSS---RKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKG
        MNC SQ+ TYTR I RRT+ VF  +TSI+G SNPYW S+FHN A+   ALDS+CSRF +RCYS+   RK  K  S S KLD++P  ME E GDFFVVRKG
Subjt:  MNCFSQLFTYTRAILRRTS-VFLPTTSINGYSNPYWRSSFHNAALNVAALDSVCSRFHMRCYSS---RKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKG

Query:  DVVGVYKNFSDSRSQLEFQLDEL-------RSTPKD
        DVVGVYK+FSD  +Q+   + +L        S PKD
Subjt:  DVVGVYKNFSDSRSQLEFQLDEL-------RSTPKD

A0A1S3CQX0 uncharacterized protein LOC103503315 isoform X2

3.1e-29

57.35

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Query:  MNCFSQLFTYTRAILRRTS-VFLPTTSINGYSNPYWRSSFHNAALNVAALDSVCSRFHMRCYSS---RKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKG
        MNC SQ+ TYTR I RRT+ VF  +TSI+G SNPYW S+FHN A+   ALDS+CSRF +RCYS+   RK  K  S S KLD++P  ME E GDFFVVRKG
Subjt:  MNCFSQLFTYTRAILRRTS-VFLPTTSINGYSNPYWRSSFHNAALNVAALDSVCSRFHMRCYSS---RKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKG

Query:  DVVGVYKNFSDSRSQLEFQLDEL-------RSTPKD
        DVVGVYK+FSD  +Q+   + +L        S PKD
Subjt:  DVVGVYKNFSDSRSQLEFQLDEL-------RSTPKD

A0A5A7TCE2 RNase H family protein, putative isoform 2

3.1e-29

57.35

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Query:  MNCFSQLFTYTRAILRRTS-VFLPTTSINGYSNPYWRSSFHNAALNVAALDSVCSRFHMRCYSS---RKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKG
        MNC SQ+ TYTR I RRT+ VF  +TSI+G SNPYW S+FHN A+   ALDS+CSRF +RCYS+   RK  K  S S KLD++P  ME E GDFFVVRKG
Subjt:  MNCFSQLFTYTRAILRRTS-VFLPTTSINGYSNPYWRSSFHNAALNVAALDSVCSRFHMRCYSS---RKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKG

Query:  DVVGVYKNFSDSRSQLEFQLDEL-------RSTPKD
        DVVGVYK+FSD  +Q+   + +L        S PKD
Subjt:  DVVGVYKNFSDSRSQLEFQLDEL-------RSTPKD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G24090.1 RNase H family protein

5.6e-07

32.37

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Query:  MNCFSQLFTYTRAILRRTSVFLPTTSINGYSNPYWRSSF----HNAALNVAALDSVCSRFHMRCYSSR-KIAKGNSCSRKLDTKPSSMEPEKGDFFVVRK
        MNC S   +Y    L + S ++        S+  W   F      + L   A+ SV     +  YSSR K  K    S    T  S+++ EK  FFVVRK
Subjt:  MNCFSQLFTYTRAILRRTSVFLPTTSINGYSNPYWRSSF----HNAALNVAALDSVCSRFHMRCYSSR-KIAKGNSCSRKLDTKPSSMEPEKGDFFVVRK

Query:  GDVVGVYKNFSDSRSQLEFQLDEL-------RSTPKDLD
        GDV+G+YK+ SD ++Q+   + +L        S PKD +
Subjt:  GDVVGVYKNFSDSRSQLEFQLDEL-------RSTPKDLD

AT3G01410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

4.4e-04

51.61

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Query:  SSMEPEKGDFFVVRKGDVVGVYKNFSDSRSQ
        S+ME EK  F++VRKGD++GVY++ S+ + Q
Subjt:  SSMEPEKGDFFVVRKGDVVGVYKNFSDSRSQ

AT3G01410.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

4.4e-04

51.61

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Query:  SSMEPEKGDFFVVRKGDVVGVYKNFSDSRSQ
        S+ME EK  F++VRKGD++GVY++ S+ + Q
Subjt:  SSMEPEKGDFFVVRKGDVVGVYKNFSDSRSQ

AT5G51080.1 RNase H family protein

5.6e-07

35.4

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Query:  MNCFSQLFTYTRAILRRTSVFLPTTSINGYSNPYWRSSFHNAALNVAALDSVCSRFHMRCYSSR-KIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKGDVV
        MN FS+  +Y   +L R S ++        S+  W   F+  +L  +   +  S   + CYSSR K AK  S   K     S  + EK  FFVVRKGD+V
Subjt:  MNCFSQLFTYTRAILRRTSVFLPTTSINGYSNPYWRSSFHNAALNVAALDSVCSRFHMRCYSSR-KIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKGDVV

Query:  GVYKNFSDSRSQL
        G+YK+  D ++Q+
Subjt:  GVYKNFSDSRSQL

AT5G51080.2 RNase H family protein

5.6e-07

35.4

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Query:  MNCFSQLFTYTRAILRRTSVFLPTTSINGYSNPYWRSSFHNAALNVAALDSVCSRFHMRCYSSR-KIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKGDVV
        MN FS+  +Y   +L R S ++        S+  W   F+  +L  +   +  S   + CYSSR K AK  S   K     S  + EK  FFVVRKGD+V
Subjt:  MNCFSQLFTYTRAILRRTSVFLPTTSINGYSNPYWRSSFHNAALNVAALDSVCSRFHMRCYSSR-KIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKGDVV

Query:  GVYKNFSDSRSQL
        G+YK+  D ++Q+
Subjt:  GVYKNFSDSRSQL

Sequences

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CDS sequence

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ATGAACTGCTTCTCCCAACTGTTTACCTATACTCGCGCCATTTTGAGAAGAACCAGCGTTTTTCTGCCTACGACCTCCATTAATGGCTACTCTAATCCCTACTGGAGGTC
AAGTTTTCACAATGCCGCTCTTAACGTTGCTGCTTTAGATTCTGTGTGCTCCAGATTCCATATGCGCTGCTATTCGTCCCGAAAAATCGCCAAGGGCAATTCTTGTTCGC
GGAAGTTAGATACTAAACCTTCTTCCATGGAACCGGAGAAGGGCGACTTCTTTGTTGTACGGAAGGGGGATGTTGTTGGAGTCTATAAAAATTTTAGTGACTCAAGGTCA
CAACTTGAATTCCAGTTGGACGAGTTACGGTCAACACCCAAAGATCTCGACAACCTTGGGAAGGAATAG

mRNA sequence

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Protein sequence

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MNCFSQLFTYTRAILRRTSVFLPTTSINGYSNPYWRSSFHNAALNVAALDSVCSRFHMRCYSSRKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKGDVVGVYKNFSDSRS
QLEFQLDELRSTPKDLDNLGKE

Moc08g31260 (gene) of Bitter gourd (OHB3-1) v2 genome