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Moc08g32030 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g32030
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr8:23160333..23162477
RNA-Seq ExpressionMoc08g32030
SyntenyMoc08g32030
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022135947.1 uncharacterized protein LOC111007781 [Momordica charantia]8.7e-1753.49Show/hide
Query:  ELIVNQITEEFKAKDSRISMYLDKTRACLAQFKEFVIRQIPQSENSNIDALAKLSSTYEIDLARIVLIKVLPAPSIFEAEQLDVEV
        +L+VNQI EE++AKDSR+  YL K R+ L QFK + + Q+P+ ENSN DALAKL+S YE DLAR VL+++L  PSI E + +++++
Subjt:  ELIVNQITEEFKAKDSRISMYLDKTRACLAQFKEFVIRQIPQSENSNIDALAKLSSTYEIDLARIVLIKVLPAPSIFEAEQLDVEV

XP_022144032.1 uncharacterized protein LOC111013824 [Momordica charantia]1.1e-1655.29Show/hide
Query:  ELIVNQITEEFKAKDSRISMYLDKTRACLAQFKEFVIRQIPQSENSNIDALAKLSSTYEIDLARIVLIKVLPAPSIFEAEQLDVE
        +L+VNQI EE++ KDSR+  YL K R+ L QF+ + + Q+P+SENSN DALAKL+S YE DLAR VL+ +L  PSI E + ++VE
Subjt:  ELIVNQITEEFKAKDSRISMYLDKTRACLAQFKEFVIRQIPQSENSNIDALAKLSSTYEIDLARIVLIKVLPAPSIFEAEQLDVE

XP_022150037.1 uncharacterized protein LOC111018309 [Momordica charantia]6.1e-1858.82Show/hide
Query:  ELIVNQITEEFKAKDSRISMYLDKTRACLAQFKEFVIRQIPQSENSNIDALAKLSSTYEIDLARIVLIKVLPAPSIFEAEQLDVE
        +L+VNQI EE++AKDSRI  YL K R+ LAQFK + + Q+P+SENSN DALAKL+S YEIDLAR V +++L  PSI E++ ++V+
Subjt:  ELIVNQITEEFKAKDSRISMYLDKTRACLAQFKEFVIRQIPQSENSNIDALAKLSSTYEIDLARIVLIKVLPAPSIFEAEQLDVE

XP_022155127.1 uncharacterized protein LOC111022266 [Momordica charantia]4.3e-1651.16Show/hide
Query:  ELIVNQITEEFKAKDSRISMYLDKTRACLAQFKEFVIRQIPQSENSNIDALAKLSSTYEIDLARIVLIKVLPAPSIFEAEQLDVEV
        +L+ NQI EE++ KDSR+  YL K R+ LAQFK + + Q+P+ +NSN+DALAKL+  YE DLAR VL+++L  PSI E + +D+++
Subjt:  ELIVNQITEEFKAKDSRISMYLDKTRACLAQFKEFVIRQIPQSENSNIDALAKLSSTYEIDLARIVLIKVLPAPSIFEAEQLDVEV

XP_022157610.1 uncharacterized protein LOC111024267 [Momordica charantia]1.3e-1756.47Show/hide
Query:  ELIVNQITEEFKAKDSRISMYLDKTRACLAQFKEFVIRQIPQSENSNIDALAKLSSTYEIDLARIVLIKVLPAPSIFEAEQLDVE
        +L+VNQI EE+KAKDSR+  YL K R+ LAQFK + + Q+P+ ENSN+DALAKL+S YE DLAR + +++L  PSI E + +DV+
Subjt:  ELIVNQITEEFKAKDSRISMYLDKTRACLAQFKEFVIRQIPQSENSNIDALAKLSSTYEIDLARIVLIKVLPAPSIFEAEQLDVE

TrEMBL top hitse value%identityAlignment
A0A6J1C472 uncharacterized protein LOC1110077814.2e-1753.49Show/hide
Query:  ELIVNQITEEFKAKDSRISMYLDKTRACLAQFKEFVIRQIPQSENSNIDALAKLSSTYEIDLARIVLIKVLPAPSIFEAEQLDVEV
        +L+VNQI EE++AKDSR+  YL K R+ L QFK + + Q+P+ ENSN DALAKL+S YE DLAR VL+++L  PSI E + +++++
Subjt:  ELIVNQITEEFKAKDSRISMYLDKTRACLAQFKEFVIRQIPQSENSNIDALAKLSSTYEIDLARIVLIKVLPAPSIFEAEQLDVEV

A0A6J1CSJ1 Ribonuclease H5.5e-1755.29Show/hide
Query:  ELIVNQITEEFKAKDSRISMYLDKTRACLAQFKEFVIRQIPQSENSNIDALAKLSSTYEIDLARIVLIKVLPAPSIFEAEQLDVE
        +L+VNQI EE++ KDSR+  YL K R+ L QF+ + + Q+P+SENSN DALAKL+S YE DLAR VL+ +L  PSI E + ++VE
Subjt:  ELIVNQITEEFKAKDSRISMYLDKTRACLAQFKEFVIRQIPQSENSNIDALAKLSSTYEIDLARIVLIKVLPAPSIFEAEQLDVE

A0A6J1D9M4 uncharacterized protein LOC1110183092.9e-1858.82Show/hide
Query:  ELIVNQITEEFKAKDSRISMYLDKTRACLAQFKEFVIRQIPQSENSNIDALAKLSSTYEIDLARIVLIKVLPAPSIFEAEQLDVE
        +L+VNQI EE++AKDSRI  YL K R+ LAQFK + + Q+P+SENSN DALAKL+S YEIDLAR V +++L  PSI E++ ++V+
Subjt:  ELIVNQITEEFKAKDSRISMYLDKTRACLAQFKEFVIRQIPQSENSNIDALAKLSSTYEIDLARIVLIKVLPAPSIFEAEQLDVE

A0A6J1DBX4 Ribonuclease H2.1e-1629.14Show/hide
Query:  IFSGPIGGQSGNKREALIQEAKHEI-NASYFRPIVSITFLITFTKRDLEGVHQPHNNVLVIS-MEKHLLM------------------------------
        IF GP GGQSGNKR+ L +EA+ E+ N    +P  S    ITF   DL+GVH PHN+ LVI+ +  H+L+                              
Subjt:  IFSGPIGGQSGNKREALIQEAKHEI-NASYFRPIVSITFLITFTKRDLEGVHQPHNNVLVIS-MEKHLLM------------------------------

Query:  -------------------------------------------------------------------------------------------PMELIVNQI
                                                                                                     +LIVNQI
Subjt:  -------------------------------------------------------------------------------------------PMELIVNQI

Query:  TEEFKAKDSRISMYLDKTRACLAQFKEFVIRQIPQSENSNIDALAKLSSTYEIDLARIVLIKVLPAPSIFEAEQLDVE
         EE++AKD R+  YL K R+ LAQF  + + Q+P+SENSN D LAKL+S YE DLAR V + +L  PSI E + + V+
Subjt:  TEEFKAKDSRISMYLDKTRACLAQFKEFVIRQIPQSENSNIDALAKLSSTYEIDLARIVLIKVLPAPSIFEAEQLDVE

A0A6J1DTK4 uncharacterized protein LOC1110242676.5e-1856.47Show/hide
Query:  ELIVNQITEEFKAKDSRISMYLDKTRACLAQFKEFVIRQIPQSENSNIDALAKLSSTYEIDLARIVLIKVLPAPSIFEAEQLDVE
        +L+VNQI EE+KAKDSR+  YL K R+ LAQFK + + Q+P+ ENSN+DALAKL+S YE DLAR + +++L  PSI E + +DV+
Subjt:  ELIVNQITEEFKAKDSRISMYLDKTRACLAQFKEFVIRQIPQSENSNIDALAKLSSTYEIDLARIVLIKVLPAPSIFEAEQLDVE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTTTAGTGGGCCAATTGGTGGTCAGTCAGGGAATAAGCGTGAAGCCTTGATCCAAGAAGCTAAACATGAGATTAATGCTTCATACTTCAGACCTATAGTCTCAAT
AACCTTCTTAATAACCTTCACTAAGAGGGACTTGGAAGGAGTCCACCAACCACATAATAATGTGTTGGTTATATCGATGGAGAAGCATCTACTTATGCCGATGGAGCTAA
TTGTTAATCAAATTACTGAGGAATTTAAAGCGAAAGATAGCCGAATATCGATGTATCTCGATAAGACGCGTGCATGTTTAGCTCAGTTTAAGGAGTTTGTGATACGACAA
ATTCCCCAATCAGAGAATTCAAACATCGATGCTTTAGCTAAATTGTCTTCGACCTATGAAATTGATCTGGCCCGAATTGTACTCATAAAAGTGTTGCCTGCACCCTCCAT
ATTTGAGGCAGAACAATTGGATGTTGAAGTCTGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGATTTTTAGTGGGCCAATTGGTGGTCAGTCAGGGAATAAGCGTGAAGCCTTGATCCAAGAAGCTAAACATGAGATTAATGCTTCATACTTCAGACCTATAGTCTCAAT
AACCTTCTTAATAACCTTCACTAAGAGGGACTTGGAAGGAGTCCACCAACCACATAATAATGTGTTGGTTATATCGATGGAGAAGCATCTACTTATGCCGATGGAGCTAA
TTGTTAATCAAATTACTGAGGAATTTAAAGCGAAAGATAGCCGAATATCGATGTATCTCGATAAGACGCGTGCATGTTTAGCTCAGTTTAAGGAGTTTGTGATACGACAA
ATTCCCCAATCAGAGAATTCAAACATCGATGCTTTAGCTAAATTGTCTTCGACCTATGAAATTGATCTGGCCCGAATTGTACTCATAAAAGTGTTGCCTGCACCCTCCAT
ATTTGAGGCAGAACAATTGGATGTTGAAGTCTGGTAG
Protein sequenceShow/hide protein sequence
MIFSGPIGGQSGNKREALIQEAKHEINASYFRPIVSITFLITFTKRDLEGVHQPHNNVLVISMEKHLLMPMELIVNQITEEFKAKDSRISMYLDKTRACLAQFKEFVIRQ
IPQSENSNIDALAKLSSTYEIDLARIVLIKVLPAPSIFEAEQLDVEVW