CuGenDBv2

Gene ID	Moc08g32200
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr8:23292110..23294031
RNA-Seq Expression	Moc08g32200
Synteny	Moc08g32200
Gene Ontology terms	GO:0044237 - cellular metabolic process (biological process) GO:0097159 - organic cyclic compound binding (molecular function) GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

CAN73240.1 hypothetical protein VITISV_035336 [Vitis vinifera]

3.5e-43

50.76

Show/hide

Query:  GIMKFDGANFEYWKMNIKDYLTCNKLN-KALKERPAGMKDKDWVETNEEAVAFIRLCLSMNVASLVANETTAIDLMKALENRYEKPSANNKVYLVRRFFN
        GI KFDG +F YW+M I+DYL   KL+   L  +P  MK ++W   + + +  IRL LS +VA  V  E T  DLMKAL   YEKPSANNKV+L+++ FN
Subjt:  GIMKFDGANFEYWKMNIKDYLTCNKLN-KALKERPAGMKDKDWVETNEEAVAFIRLCLSMNVASLVANETTAIDLMKALENRYEKPSANNKVYLVRRFFN

Query:  IQMEENTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVE
        ++M EN SV  H+NE   + NQL+SV+I F DE+ A+ +L SLP SWE M+ AVSNS G + LK+++I D  +AEEIRR+ +G+  TS  GSAL +E
Subjt:  IQMEENTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVE

CAN74624.1 hypothetical protein VITISV_024822 [Vitis vinifera]

4.5e-43

50.76

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Query:  GIMKFDGANFEYWKMNIKDYLTCNKLN-KALKERPAGMKDKDWVETNEEAVAFIRLCLSMNVASLVANETTAIDLMKALENRYEKPSANNKVYLVRRFFN
        GI KFDG +F YW+M I+DYL   KL+   L  +P  MK ++W   + + +  IRL LS +VA  V  E T  DLMKAL   YEKPSANNKV+L+++ FN
Subjt:  GIMKFDGANFEYWKMNIKDYLTCNKLN-KALKERPAGMKDKDWVETNEEAVAFIRLCLSMNVASLVANETTAIDLMKALENRYEKPSANNKVYLVRRFFN

Query:  IQMEENTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVE
        ++M EN SV  H+NE   + NQL+SV+I F DE+ A+ +L SLP SWE M+ AVSNS G + LK+++I D  +AEEIRR+ +G+  TS  GSAL +E
Subjt:  IQMEENTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVE

RVW25839.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

2.0e-43

50.76

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Query:  GIMKFDGANFEYWKMNIKDYLTCNKLN-KALKERPAGMKDKDWVETNEEAVAFIRLCLSMNVASLVANETTAIDLMKALENRYEKPSANNKVYLVRRFFN
        GI KFDG +F YW+M I+DYL   KL+   L  +P  MK ++W   + + +  IRL LS +VA  V  E T  DLMKAL   YEKPSANNKV+L+++ FN
Subjt:  GIMKFDGANFEYWKMNIKDYLTCNKLN-KALKERPAGMKDKDWVETNEEAVAFIRLCLSMNVASLVANETTAIDLMKALENRYEKPSANNKVYLVRRFFN

Query:  IQMEENTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVE
        ++M EN SV  H+NE   + NQL+SV+I F DE+ A+ +L SLP SWE M+ AVSNS+G + LK+++I D  +AEEIRR+ +G+  TS  GSAL +E
Subjt:  IQMEENTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVE

RVW41523.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

4.5e-43

50.76

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Query:  GIMKFDGANFEYWKMNIKDYLTCNKLN-KALKERPAGMKDKDWVETNEEAVAFIRLCLSMNVASLVANETTAIDLMKALENRYEKPSANNKVYLVRRFFN
        GI KFDG +F YW+M I+DYL   KL+   L  +P  MK ++W   + + +  IRL LS +VA  V  E T  DLMKAL   YEKPSANNKV+L+++ FN
Subjt:  GIMKFDGANFEYWKMNIKDYLTCNKLN-KALKERPAGMKDKDWVETNEEAVAFIRLCLSMNVASLVANETTAIDLMKALENRYEKPSANNKVYLVRRFFN

Query:  IQMEENTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVE
        ++M EN SV  H+NE   + NQL+SV+I F DE+ A+ +L SLP SWE M+ AVSNS G + LK+++I D  +AEEIRR+ +G+  TS  GSAL +E
Subjt:  IQMEENTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVE

RVW73393.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

4.5e-43

50.76

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Query:  GIMKFDGANFEYWKMNIKDYLTCNKLN-KALKERPAGMKDKDWVETNEEAVAFIRLCLSMNVASLVANETTAIDLMKALENRYEKPSANNKVYLVRRFFN
        GI KFDG +F YW+M I+DYL   KL+   L  +P  MK ++W   + + +  IRL LS +VA  V  E T  DLMKAL   YEKPSANNKV+L+++ FN
Subjt:  GIMKFDGANFEYWKMNIKDYLTCNKLN-KALKERPAGMKDKDWVETNEEAVAFIRLCLSMNVASLVANETTAIDLMKALENRYEKPSANNKVYLVRRFFN

Query:  IQMEENTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVE
        ++M EN SV  H+NE   + NQL+SV+I F DE+ A+ +L SLP SWE M+ AVSNS G + LK+++I D  +AEEIRR+ +G+  TS  GSAL +E
Subjt:  IQMEENTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVE

TrEMBL top hits

e value

%identity

Alignment

A0A438CRS1 Retrovirus-related Pol polyprotein from transposon TNT 1-94

9.8e-44

50.76

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Query:  GIMKFDGANFEYWKMNIKDYLTCNKLN-KALKERPAGMKDKDWVETNEEAVAFIRLCLSMNVASLVANETTAIDLMKALENRYEKPSANNKVYLVRRFFN
        GI KFDG +F YW+M I+DYL   KL+   L  +P  MK ++W   + + +  IRL LS +VA  V  E T  DLMKAL   YEKPSANNKV+L+++ FN
Subjt:  GIMKFDGANFEYWKMNIKDYLTCNKLN-KALKERPAGMKDKDWVETNEEAVAFIRLCLSMNVASLVANETTAIDLMKALENRYEKPSANNKVYLVRRFFN

Query:  IQMEENTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVE
        ++M EN SV  H+NE   + NQL+SV+I F DE+ A+ +L SLP SWE M+ AVSNS+G + LK+++I D  +AEEIRR+ +G+  TS  GSAL +E
Subjt:  IQMEENTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVE

A0A438HDD3 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.2e-43

50.76

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Query:  GIMKFDGANFEYWKMNIKDYLTCNKLN-KALKERPAGMKDKDWVETNEEAVAFIRLCLSMNVASLVANETTAIDLMKALENRYEKPSANNKVYLVRRFFN
        GI KFDG +F YW+M I+DYL   KL+   L  +P  MK ++W   + + +  IRL LS +VA  V  E T  DLMKAL   YEKPSANNKV+L+++ FN
Subjt:  GIMKFDGANFEYWKMNIKDYLTCNKLN-KALKERPAGMKDKDWVETNEEAVAFIRLCLSMNVASLVANETTAIDLMKALENRYEKPSANNKVYLVRRFFN

Query:  IQMEENTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVE
        ++M EN SV  H+NE   + NQL+SV+I F DE+ A+ +L SLP SWE M+ AVSNS G + LK+++I D  +AEEIRR+ +G+  TS  GSAL +E
Subjt:  IQMEENTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVE

A0A7N2LG47 Integrase catalytic domain-containing protein

1.7e-43

45.96

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Query:  GIMKFDGANFEYWKMNIKDYLTCNKLN-KALKERPAGMKDKDWVETNEEAVAFIRLCLSMNVASLVANETTAIDLMKALENRYEKPSANNKVYLVRRFFN
        GI KFDG +F YW+M I+DYL   KL+   L  +P  MK ++W   + + +  IRL LS +VA  V  E T +DLMKAL   YEKPSANNKV+L+++ FN
Subjt:  GIMKFDGANFEYWKMNIKDYLTCNKLN-KALKERPAGMKDKDWVETNEEAVAFIRLCLSMNVASLVANETTAIDLMKALENRYEKPSANNKVYLVRRFFN

Query:  IQMEENTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVEKGS
        ++M EN +V  H+NE   + NQL+SV+I F DE+ A+ +L SLP SWETM+ AVSNS G + LK+++I D  +AEEIRR+ +G+ S S  GSAL +E   
Subjt:  IQMEENTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVEKGS

Query:  KLVAIGHRRSTVYTSQLSVARGSLKQRMQVTDGVQ
        +    G+ R++      S +R S + R +   G Q
Subjt:  KLVAIGHRRSTVYTSQLSVARGSLKQRMQVTDGVQ

A0A7N2R8N6 Uncharacterized protein

9.8e-44

50.76

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Query:  GIMKFDGANFEYWKMNIKDYLTCNKLN-KALKERPAGMKDKDWVETNEEAVAFIRLCLSMNVASLVANETTAIDLMKALENRYEKPSANNKVYLVRRFFN
        GI KFDG +F +W+M I+DYL   KL+   L E+P  MK ++W   + + +  IRL LS +VA  V  E T  DLMKAL   YEKPSANNKV+L+++ FN
Subjt:  GIMKFDGANFEYWKMNIKDYLTCNKLN-KALKERPAGMKDKDWVETNEEAVAFIRLCLSMNVASLVANETTAIDLMKALENRYEKPSANNKVYLVRRFFN

Query:  IQMEENTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVE
        ++M EN SV  H+NE   + NQL+SV+I F DE+ A+ +L SLP SWE M+ AVSNS G + LK+++I D  +AEEIRR+ +G+  TS  GSAL +E
Subjt:  IQMEENTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVE

A5CAX7 Uncharacterized protein

1.7e-43

50.76

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Query:  GIMKFDGANFEYWKMNIKDYLTCNKLN-KALKERPAGMKDKDWVETNEEAVAFIRLCLSMNVASLVANETTAIDLMKALENRYEKPSANNKVYLVRRFFN
        GI KFDG +F YW+M I+DYL   KL+   L  +P  MK ++W   + + +  IRL LS +VA  V  E T  DLMKAL   YEKPSANNKV+L+++ FN
Subjt:  GIMKFDGANFEYWKMNIKDYLTCNKLN-KALKERPAGMKDKDWVETNEEAVAFIRLCLSMNVASLVANETTAIDLMKALENRYEKPSANNKVYLVRRFFN

Query:  IQMEENTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVE
        ++M EN SV  H+NE   + NQL+SV+I F DE+ A+ +L SLP SWE M+ AVSNS G + LK+++I D  +AEEIRR+ +G+  TS  GSAL +E
Subjt:  IQMEENTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVE

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.1e-19

31.88

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Query:  IMKFDGAN-FEYWKMNIKDYLTCNKLNKAL---KERPAGMKDKDWVETNEEAVAFIRLCLSMNVASLVANETTAIDLMKALENRYEKPSANNKVYLVRRF
        + KF+G N F  W+  ++D L    L+K L    ++P  MK +DW + +E A + IRL LS +V + + +E TA  +   LE+ Y   +  NK+YL ++ 
Subjt:  IMKFDGAN-FEYWKMNIKDYLTCNKLNKAL---KERPAGMKDKDWVETNEEAVAFIRLCLSMNVASLVANETTAIDLMKALENRYEKPSANNKVYLVRRF

Query:  FNIQMEENTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVEK
        + + M E T+  SH+N    LI QLA++ +   +E  AI LL SLP S++ + T + +  G  +++  ++  A +  E  RK         QG AL  E 
Subjt:  FNIQMEENTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVEK

Query:  GSKLVAIGHRRSTVYTSQLSVARGSLKQR
          +     ++RS+    + S ARG  K R
Subjt:  GSKLVAIGHRRSTVYTSQLSVARGSLKQR

Arabidopsis top hits

e value

%identity

Alignment

AT3G29785.1 unknown protein

2.4e-10

38.64

Show/hide

Query:  KFDGANFEYWKMNIKDYLTCNKLNKALKERPAGMKDKDWVETNEEAVAFIRLCLSMNVASLVANETTAIDLMKALENRYEKPSANNKV
        K DG ++ + +M I+DYL   KL++ L ++   M   DW     + +  IRL +S N+A  VA E +   LMK L + Y+KPS NN V
Subjt:  KFDGANFEYWKMNIKDYLTCNKLNKALKERPAGMKDKDWVETNEEAVAFIRLCLSMNVASLVANETTAIDLMKALENRYEKPSANNKV

Sequences

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CDS sequence

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ATGGGATCAACAGAGAAGTCAGGTTTTGAAGGAATCATGAAGTTCGATGGGGCCAATTTCGAATATTGGAAGATGAATATTAAGGATTACTTGACCTGCAATAAGTTGAA
TAAAGCTTTAAAGGAACGACCAGCAGGGATGAAAGATAAAGATTGGGTGGAGACGAATGAAGAGGCAGTTGCCTTTATCAGATTGTGTTTGTCGATGAATGTGGCAAGTC
TCGTAGCAAACGAAACGACAGCAATAGATCTGATGAAAGCATTGGAGAATAGGTACGAGAAACCCTCAGCTAATAATAAGGTATATCTCGTAAGGAGATTCTTTAACATT
CAAATGGAAGAGAATACTTCTGTCAATTCCCACATAAATGAGGTCACAAAATTAATCAATCAATTGGCATCAGTTAAGATTACTTTTAGTGACGAAGTGAATGCTATTCA
GTTGCTAACATCTTTACCTGAAAGTTGGGAAACGATGAAGACAGCAGTGTCCAATTCGTTAGGAGATAAATCTTTGAAATTTTCAGAAATTTGTGATGCGGCAATTGCTG
AAGAAATTCGTAGAAAGGGGAGTGGAAAAGAATCTACTTCCGTACAAGGCTCAGCATTGGCTGTCGAAAAAGGATCCAAGTTGGTGGCAATTGGCCATAGAAGATCTACA
GTTTACACGTCGCAATTGAGTGTTGCTAGAGGATCATTGAAACAGCGGATGCAAGTTACAGATGGTGTCCAAAGAGGTAGGACTGAGCCAGCAACAAAGACAACCAGAAC
AAATCAGGAGAATCTGCCATCAATTCAGGAACAACAATTGGGAAGTCAAAGAACGAGAACAGTTGCATTAGAGAAGATGAACTCAGTAGGTGCTGAGGAAAAGAATGGAG
TTTCAATTCTGGCAGCAGGCTTGAATACAGTTGTCAAGTCATCAGTGGGAAGAGAAGCCTTGAAGATTTTTTCAAGAAGATCAGAAATTGTTGCAGTAGAAGCTTTGGAG
TTTTCCAAGATTATGAGAGACTGTTGTTGCAGTGGGAGGCAAGATCGATGTTTTGTCTCCATGTGGGAGATTGTTGGAATAATGGAGCCAAAACAGATGACCGCTGTTCT
ACGAGGAAAAGGATTTTCAAACACTACCAATTCCTACAAGGAGTAG

mRNA sequence

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Protein sequence

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MGSTEKSGFEGIMKFDGANFEYWKMNIKDYLTCNKLNKALKERPAGMKDKDWVETNEEAVAFIRLCLSMNVASLVANETTAIDLMKALENRYEKPSANNKVYLVRRFFNI
QMEENTSVNSHINEVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVEKGSKLVAIGHRRST
VYTSQLSVARGSLKQRMQVTDGVQRGRTEPATKTTRTNQENLPSIQEQQLGSQRTRTVALEKMNSVGAEEKNGVSILAAGLNTVVKSSVGREALKIFSRRSEIVAVEALE
FSKIMRDCCCSGRQDRCFVSMWEIVGIMEPKQMTAVLRGKGFSNTTNSYKE

Moc08g32200 (gene) of Bitter gourd (OHB3-1) v2 genome