; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc08g32230 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g32230
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionCCHC-type domain-containing protein
Genome locationchr8:23311789..23312202
RNA-Seq ExpressionMoc08g32230
SyntenyMoc08g32230
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016491 - oxidoreductase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5755123.1 putative RNA-directed DNA polymerase [Helianthus annuus]3.7e-4866.42Show/hide
Query:  MVTLNDSNHQVWKRKMENVLYVRDLYFPVFSLEKHEDKTNLECEIHHRKICGFIRQWVEENILNHFGEETHVRTIWNKLKSLYASKTGNNKIFLIKQMIA
        +V LN SN+ VWK KME++LYV+D Y PVF+ +K  DKT+ E  I HRK+CG+IRQWV++N+LNH   ETH RT+WNKL+ LYA KTGNNK+FLIKQ+I 
Subjt:  MVTLNDSNHQVWKRKMENVLYVRDLYFPVFSLEKHEDKTNLECEIHHRKICGFIRQWVEENILNHFGEETHVRTIWNKLKSLYASKTGNNKIFLIKQMIA

Query:  LKYQDGTPMSDHLNTFQGIINKSDGMKIKFEDEIQRL
        LKY DGTP+SDHLN FQGIIN+  GM IKFEDE+Q L
Subjt:  LKYQDGTPMSDHLNTFQGIINKSDGMKIKFEDEIQRL
KAF5762160.1 putative RNA-directed DNA polymerase [Helianthus annuus]3.7e-4866.42Show/hide
Query:  MVTLNDSNHQVWKRKMENVLYVRDLYFPVFSLEKHEDKTNLECEIHHRKICGFIRQWVEENILNHFGEETHVRTIWNKLKSLYASKTGNNKIFLIKQMIA
        +V LN SN+ VWK KME++LYV+D Y PVF+ +K  DKT+ E  I HRK+CG+IRQWV++N+LNH   ETH RT+WNKL+ LYA KTGNNK+FLIKQ+I 
Subjt:  MVTLNDSNHQVWKRKMENVLYVRDLYFPVFSLEKHEDKTNLECEIHHRKICGFIRQWVEENILNHFGEETHVRTIWNKLKSLYASKTGNNKIFLIKQMIA

Query:  LKYQDGTPMSDHLNTFQGIINKSDGMKIKFEDEIQRL
        LKY DGTP+SDHLN FQGIIN+  GM IKFEDE+Q L
Subjt:  LKYQDGTPMSDHLNTFQGIINKSDGMKIKFEDEIQRL
KAF5774771.1 putative RNA-directed DNA polymerase [Helianthus annuus]3.7e-4866.42Show/hide
Query:  MVTLNDSNHQVWKRKMENVLYVRDLYFPVFSLEKHEDKTNLECEIHHRKICGFIRQWVEENILNHFGEETHVRTIWNKLKSLYASKTGNNKIFLIKQMIA
        +V LN SN+ VWK KME++LYV+D Y PVF+ +K  DKT+ E  I HRK+CG+IRQWV++N+LNH   ETH RT+WNKL+ LYA KTGNNK+FLIKQ+I 
Subjt:  MVTLNDSNHQVWKRKMENVLYVRDLYFPVFSLEKHEDKTNLECEIHHRKICGFIRQWVEENILNHFGEETHVRTIWNKLKSLYASKTGNNKIFLIKQMIA

Query:  LKYQDGTPMSDHLNTFQGIINKSDGMKIKFEDEIQRL
        LKY DGTP+SDHLN FQGIIN+  GM IKFEDE+Q L
Subjt:  LKYQDGTPMSDHLNTFQGIINKSDGMKIKFEDEIQRL
KAF5786946.1 putative RNA-directed DNA polymerase [Helianthus annuus]3.7e-4866.42Show/hide
Query:  MVTLNDSNHQVWKRKMENVLYVRDLYFPVFSLEKHEDKTNLECEIHHRKICGFIRQWVEENILNHFGEETHVRTIWNKLKSLYASKTGNNKIFLIKQMIA
        +V LN SN+ VWK KME++LYV+D Y PVF+ +K  DKT+ E  I HRK+CG+IRQWV++N+LNH   ETH RT+WNKL+ LYA KTGNNK+FLIKQ+I 
Subjt:  MVTLNDSNHQVWKRKMENVLYVRDLYFPVFSLEKHEDKTNLECEIHHRKICGFIRQWVEENILNHFGEETHVRTIWNKLKSLYASKTGNNKIFLIKQMIA

Query:  LKYQDGTPMSDHLNTFQGIINKSDGMKIKFEDEIQRL
        LKY DGTP+SDHLN FQGIIN+  GM IKFEDE+Q L
Subjt:  LKYQDGTPMSDHLNTFQGIINKSDGMKIKFEDEIQRL
KAF5795403.1 putative RNA-directed DNA polymerase [Helianthus annuus]3.7e-4866.42Show/hide
Query:  MVTLNDSNHQVWKRKMENVLYVRDLYFPVFSLEKHEDKTNLECEIHHRKICGFIRQWVEENILNHFGEETHVRTIWNKLKSLYASKTGNNKIFLIKQMIA
        +V LN SN+ VWK KME++LYV+D Y PVF+ +K  DKT+ E  I HRK+CG+IRQWV++N+LNH   ETH RT+WNKL+ LYA KTGNNK+FLIKQ+I 
Subjt:  MVTLNDSNHQVWKRKMENVLYVRDLYFPVFSLEKHEDKTNLECEIHHRKICGFIRQWVEENILNHFGEETHVRTIWNKLKSLYASKTGNNKIFLIKQMIA

Query:  LKYQDGTPMSDHLNTFQGIINKSDGMKIKFEDEIQRL
        LKY DGTP+SDHLN FQGIIN+  GM IKFEDE+Q L
Subjt:  LKYQDGTPMSDHLNTFQGIINKSDGMKIKFEDEIQRL
TrEMBL top hitse value%identityAlignment
A0A251SV86 Putative zinc finger, CCHC-type, Ribonuclease H-like domain, GAG-pre-integrase domain protein1.8e-4866.42Show/hide
Query:  MVTLNDSNHQVWKRKMENVLYVRDLYFPVFSLEKHEDKTNLECEIHHRKICGFIRQWVEENILNHFGEETHVRTIWNKLKSLYASKTGNNKIFLIKQMIA
        +V LN SN+ VWK KME++LYV+D Y PVF+ +K  DKT+ E  I HRK+CG+IRQWV++N+LNH   ETH RT+WNKL+ LYA KTGNNK+FLIKQ+I 
Subjt:  MVTLNDSNHQVWKRKMENVLYVRDLYFPVFSLEKHEDKTNLECEIHHRKICGFIRQWVEENILNHFGEETHVRTIWNKLKSLYASKTGNNKIFLIKQMIA

Query:  LKYQDGTPMSDHLNTFQGIINKSDGMKIKFEDEIQRL
        LKY DGTP+SDHLN FQGIIN+  GM IKFEDE+Q L
Subjt:  LKYQDGTPMSDHLNTFQGIINKSDGMKIKFEDEIQRL
A0A5C7HIC1 Uncharacterized protein4.0e-4863.5Show/hide
Query:  MVTLNDSNHQVWKRKMENVLYVRDLYFPVFSLEKHEDKTNLECEIHHRKICGFIRQWVEENILNHFGEETHVRTIWNKLKSLYASKTGNNKIFLIKQMIA
        M+ LN SN+ VWK KME++LYV+D Y PVF+ +K EDKT+ E  I HR++CG+IRQWV++N+ NH  EETH R++WNKL+ LYA KTGNNK+FLIK+M+ 
Subjt:  MVTLNDSNHQVWKRKMENVLYVRDLYFPVFSLEKHEDKTNLECEIHHRKICGFIRQWVEENILNHFGEETHVRTIWNKLKSLYASKTGNNKIFLIKQMIA

Query:  LKYQDGTPMSDHLNTFQGIINKSDGMKIKFEDEIQRL
        LKY+DGTP+SDHLN +QGI+N+  GM IKFEDE+Q L
Subjt:  LKYQDGTPMSDHLNTFQGIINKSDGMKIKFEDEIQRL
A0A5C7HL28 CCHC-type domain-containing protein4.0e-4863.5Show/hide
Query:  MVTLNDSNHQVWKRKMENVLYVRDLYFPVFSLEKHEDKTNLECEIHHRKICGFIRQWVEENILNHFGEETHVRTIWNKLKSLYASKTGNNKIFLIKQMIA
        M+ LN SN+ VWK KME++LYV+D Y PVF+ +K EDKT+ E  I HR++CG+IRQWV++N+ NH  EETH R++WNKL+ LYA KTGNNK+FLIK+M+ 
Subjt:  MVTLNDSNHQVWKRKMENVLYVRDLYFPVFSLEKHEDKTNLECEIHHRKICGFIRQWVEENILNHFGEETHVRTIWNKLKSLYASKTGNNKIFLIKQMIA

Query:  LKYQDGTPMSDHLNTFQGIINKSDGMKIKFEDEIQRL
        LKY+DGTP+SDHLN +QGI+N+  GM IKFEDE+Q L
Subjt:  LKYQDGTPMSDHLNTFQGIINKSDGMKIKFEDEIQRL
A0A5C7I9X1 CCHC-type domain-containing protein4.0e-4863.5Show/hide
Query:  MVTLNDSNHQVWKRKMENVLYVRDLYFPVFSLEKHEDKTNLECEIHHRKICGFIRQWVEENILNHFGEETHVRTIWNKLKSLYASKTGNNKIFLIKQMIA
        M+ LN SN+ VWK KME++LYV+D Y PVF+ +K EDKT+ E  I HR++CG+IRQWV++N+ NH  EETH R++WNKL+ LYA KTGNNK+FLIK+M+ 
Subjt:  MVTLNDSNHQVWKRKMENVLYVRDLYFPVFSLEKHEDKTNLECEIHHRKICGFIRQWVEENILNHFGEETHVRTIWNKLKSLYASKTGNNKIFLIKQMIA

Query:  LKYQDGTPMSDHLNTFQGIINKSDGMKIKFEDEIQRL
        LKY+DGTP+SDHLN +QGI+N+  GM IKFEDE+Q L
Subjt:  LKYQDGTPMSDHLNTFQGIINKSDGMKIKFEDEIQRL
A0A5C7IN93 CCHC-type domain-containing protein4.0e-4863.5Show/hide
Query:  MVTLNDSNHQVWKRKMENVLYVRDLYFPVFSLEKHEDKTNLECEIHHRKICGFIRQWVEENILNHFGEETHVRTIWNKLKSLYASKTGNNKIFLIKQMIA
        M+ LN SN+ VWK KME++LYV+D Y PVF+ +K EDKT+ E  I HR++CG+IRQWV++N+ NH  EETH R++WNKL+ LYA KTGNNK+FLIK+M+ 
Subjt:  MVTLNDSNHQVWKRKMENVLYVRDLYFPVFSLEKHEDKTNLECEIHHRKICGFIRQWVEENILNHFGEETHVRTIWNKLKSLYASKTGNNKIFLIKQMIA

Query:  LKYQDGTPMSDHLNTFQGIINKSDGMKIKFEDEIQRL
        LKY+DGTP+SDHLN +QGI+N+  GM IKFEDE+Q L
Subjt:  LKYQDGTPMSDHLNTFQGIINKSDGMKIKFEDEIQRL
SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-942.4e-1332.31Show/hide
Query:  DSNHQVWKRKMENVLYVRDLYFPVFSLEKHEDKTNLE--CEIHHRKICGFIRQWVEENILNHFGEETHVRTIWNKLKSLYASKTGNNKIFLIKQMIALKY
        D+    W+R+M ++L  + L+  +    K  D    E   ++  R     IR  + ++++N+  +E   R IW +L+SLY SKT  NK++L KQ+ AL  
Subjt:  DSNHQVWKRKMENVLYVRDLYFPVFSLEKHEDKTNLE--CEIHHRKICGFIRQWVEENILNHFGEETHVRTIWNKLKSLYASKTGNNKIFLIKQMIALKY

Query:  QDGTPMSDHLNTFQGIINKSDGMKIKFEDE
         +GT    HLN F G+I +   + +K E+E
Subjt:  QDGTPMSDHLNTFQGIINKSDGMKIKFEDE
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGACATTGAATGACTCAAATCATCAAGTTTGGAAAAGAAAGATGGAAAATGTTTTGTATGTGAGAGATCTTTATTTTCCTGTTTTTTCACTTGAGAAGCAT
GAAGATAAAACTAATTTAGAATGTGAAATACATCATAGAAAAATATGTGGCTTTATTAGACAGTGGGTAGAAGAAAATATTCTAAATCATTTTGGAGAAGAAACA
CATGTACGGACCATATGGAACAAACTTAAGTCGTTATATGCCTCGAAAACTGGTAACAATAAAATATTTCTGATCAAGCAAATGATAGCTTTGAAGTATCAAGAT
GGAACACCTATGTCAGATCACTTGAATACATTTCAAGGTATCATCAATAAGTCTGATGGAATGAAAATCAAGTTTGAGGATGAGATACAAAGGTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGACATTGAATGACTCAAATCATCAAGTTTGGAAAAGAAAGATGGAAAATGTTTTGTATGTGAGAGATCTTTATTTTCCTGTTTTTTCACTTGAGAAGCAT
GAAGATAAAACTAATTTAGAATGTGAAATACATCATAGAAAAATATGTGGCTTTATTAGACAGTGGGTAGAAGAAAATATTCTAAATCATTTTGGAGAAGAAACA
CATGTACGGACCATATGGAACAAACTTAAGTCGTTATATGCCTCGAAAACTGGTAACAATAAAATATTTCTGATCAAGCAAATGATAGCTTTGAAGTATCAAGAT
GGAACACCTATGTCAGATCACTTGAATACATTTCAAGGTATCATCAATAAGTCTGATGGAATGAAAATCAAGTTTGAGGATGAGATACAAAGGTTATGA
Protein sequenceShow/hide protein sequence
MVTLNDSNHQVWKRKMENVLYVRDLYFPVFSLEKHEDKTNLECEIHHRKICGFIRQWVEENILNHFGEETHVRTIWNKLKSLYASKTGNNKIFLIKQMIALKYQD
GTPMSDHLNTFQGIINKSDGMKIKFEDEIQRL