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Moc08g32860 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g32860
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr8:23860841..23864433
RNA-Seq ExpressionMoc08g32860
SyntenyMoc08g32860
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022149378.1 uncharacterized protein LOC111017809 [Momordica charantia]5.7e-6446.46Show/hide
Query:  MAEFVVIDGRSAYNAIFGRPIIHSFWAIPLTLHQVLKYPTPNGVGTIRGEQTASKECYASALKGSSVCALETLAGRDGTLEFEADLP---RKEFVAPTEE
        MAEFVVID RSAYNAIFGRP+IHS  A+P TLHQ LKY TPNGVG +RGEQ  S+ECYASALKG SVCALE  AG D +LE +ADLP   ++EF A TEE
Subjt:  MAEFVVIDGRSAYNAIFGRPIIHSFWAIPLTLHQVLKYPTPNGVGTIRGEQTASKECYASALKGSSVCALETLAGRDGTLEFEADLP---RKEFVAPTEE

Query:  LELVPLLSPEKQ----------------------------------------------------------------------------------------
        LELVPLLSPE+Q                                                                                        
Subjt:  LELVPLLSPEKQ----------------------------------------------------------------------------------------

Query:  ---------------------------------LASVYETDLARSVPVEILDNPSILEPDLMEIGAPESSWMDPIADFIRGNSPQDPKERRKLVRRAARF
                                         LAS YETDLARSVPVEILDNPSILEPDLME+  P  SWMD I +FI+GN PQDPKE +K+ R+ A+F
Subjt:  ---------------------------------LASVYETDLARSVPVEILDNPSILEPDLMEIGAPESSWMDPIADFIRGNSPQDPKERRKLVRRAARF

Query:  VVRDGALYRRGFSLPLLRCLTPEEG
        ++RDGALYR+GFSLPLL+C+TPE+G
Subjt:  VVRDGALYRRGFSLPLLRCLTPEEG

XP_022152110.1 uncharacterized protein LOC111019899 [Momordica charantia]3.4e-6183.56Show/hide
Query:  EKPDTAGWGFSGESVIPEGCIDLPVTLGQDQTRVIQMAEFVVIDGRSAYNAIFGRPIIHSFWAIPLTLHQVLKYPTPNGVGTIRGEQTASKECYASALKG
        +K  T   GFSGESV+PEGCIDLPVTLGQDQTRV QMAEFVV+DGRSAYNAIFGRPIIHSF AIP TLHQVLKY TPNGVGT+RGEQTAS+ECYAS LKG
Subjt:  EKPDTAGWGFSGESVIPEGCIDLPVTLGQDQTRVIQMAEFVVIDGRSAYNAIFGRPIIHSFWAIPLTLHQVLKYPTPNGVGTIRGEQTASKECYASALKG

Query:  SSVCALETLAGRDGTLEFEADLPRKEFVAPTEELELVPLLSPEKQL
        +SVCALETL  RDGTLEFEADLP +EF AP EELELVPLLS EKQ+
Subjt:  SSVCALETLAGRDGTLEFEADLPRKEFVAPTEELELVPLLSPEKQL

XP_022155866.1 uncharacterized protein LOC111022880 [Momordica charantia]3.4e-6188.41Show/hide
Query:  GFSGESVIPEGCIDLPVTLGQDQTRVIQMAEFVVIDGRSAYNAIFGRPIIHSFWAIPLTLHQVLKYPTPNGVGTIRGEQTASKECYASALKGSSVCALET
        GFSGESVIPEGCIDLPVTLGQ+QTR+ QMAEFVV+DGRS YNAIFGRPIIHSF AIP TLHQVLKYPTPNGVGT+RGEQ AS+ECYA+ALKG SVCALET
Subjt:  GFSGESVIPEGCIDLPVTLGQDQTRVIQMAEFVVIDGRSAYNAIFGRPIIHSFWAIPLTLHQVLKYPTPNGVGTIRGEQTASKECYASALKGSSVCALET

Query:  LAGRDGTLEFEADLPRKEFVAPTEELELVPLLSPEKQL
        L  RDGTLEFEA+LPRKEF APTEELELVPLLSPEKQL
Subjt:  LAGRDGTLEFEADLPRKEFVAPTEELELVPLLSPEKQL

XP_022157676.1 uncharacterized protein LOC111024332 [Momordica charantia]5.0e-6088.32Show/hide
Query:  GFSGESVIPEGCIDLPVTLGQDQTRVIQMAEFVVIDGRSAYNAIFGRPIIHSFWAIPLTLHQVLKYPTPNGVGTIRGEQTASKECYASALKGSSVCALET
        GFSGESVIPEGCIDLPVTLGQDQTRV QM EFVV+DGRS YNAIFGRPIIHSF  IP TLHQVLKY TPNGVGT+RGEQT S+ECYA+ALKGSSVCALET
Subjt:  GFSGESVIPEGCIDLPVTLGQDQTRVIQMAEFVVIDGRSAYNAIFGRPIIHSFWAIPLTLHQVLKYPTPNGVGTIRGEQTASKECYASALKGSSVCALET

Query:  LAGRDGTLEFEADLPRKEFVAPTEELELVPLLSPEKQ
        L  RDGTLE EADLPRKEF APTEELELVPLLSPEKQ
Subjt:  LAGRDGTLEFEADLPRKEFVAPTEELELVPLLSPEKQ

XP_022158219.1 protein NYNRIN-like [Momordica charantia]1.8e-8669.23Show/hide
Query:  MAEFVVIDGRSAYNAIFGRPIIHSFWAIPLTLHQVLKYPTPNGVGTIRGEQTASKECYASALKGSSVCALETLAGRDGTLEFEADLPRKEFVAPTEELEL
        MAEFVVIDGRSAYNAIFGRPIIHSF  +P TLHQVLKY TPNGVGT+RGEQTAS+ECYASALKGSSVCALE  A  + TLEF+ADLPR+EF APTEELEL
Subjt:  MAEFVVIDGRSAYNAIFGRPIIHSFWAIPLTLHQVLKYPTPNGVGTIRGEQTASKECYASALKGSSVCALETLAGRDGTLEFEADLPRKEFVAPTEELEL

Query:  VPLLSPEKQ----------------------------------------------------------LASVYETDLARSVPVEILDNPSILEPDLMEIGA
        VPLLS EKQ                                                          LAS YETDLARSVPVEILDNPSI EPDLMEIGA
Subjt:  VPLLSPEKQ----------------------------------------------------------LASVYETDLARSVPVEILDNPSILEPDLMEIGA

Query:  PESSWMDPIADFIRGNSPQDPKERRKLVRRAARFVVRDGALYRRGFSLPLLRCLTPEEGL
        PESSWMDPIADFIRGNSPQDPKERRKL  R ARFVVRDGALYRRGFSLPLLRCLTPEEGL
Subjt:  PESSWMDPIADFIRGNSPQDPKERRKLVRRAARFVVRDGALYRRGFSLPLLRCLTPEEGL

TrEMBL top hitse value%identityAlignment
A0A6J1D6M1 Ribonuclease H2.7e-6446.46Show/hide
Query:  MAEFVVIDGRSAYNAIFGRPIIHSFWAIPLTLHQVLKYPTPNGVGTIRGEQTASKECYASALKGSSVCALETLAGRDGTLEFEADLP---RKEFVAPTEE
        MAEFVVID RSAYNAIFGRP+IHS  A+P TLHQ LKY TPNGVG +RGEQ  S+ECYASALKG SVCALE  AG D +LE +ADLP   ++EF A TEE
Subjt:  MAEFVVIDGRSAYNAIFGRPIIHSFWAIPLTLHQVLKYPTPNGVGTIRGEQTASKECYASALKGSSVCALETLAGRDGTLEFEADLP---RKEFVAPTEE

Query:  LELVPLLSPEKQ----------------------------------------------------------------------------------------
        LELVPLLSPE+Q                                                                                        
Subjt:  LELVPLLSPEKQ----------------------------------------------------------------------------------------

Query:  ---------------------------------LASVYETDLARSVPVEILDNPSILEPDLMEIGAPESSWMDPIADFIRGNSPQDPKERRKLVRRAARF
                                         LAS YETDLARSVPVEILDNPSILEPDLME+  P  SWMD I +FI+GN PQDPKE +K+ R+ A+F
Subjt:  ---------------------------------LASVYETDLARSVPVEILDNPSILEPDLMEIGAPESSWMDPIADFIRGNSPQDPKERRKLVRRAARF

Query:  VVRDGALYRRGFSLPLLRCLTPEEG
        ++RDGALYR+GFSLPLL+C+TPE+G
Subjt:  VVRDGALYRRGFSLPLLRCLTPEEG

A0A6J1DD03 uncharacterized protein LOC1110198991.7e-6183.56Show/hide
Query:  EKPDTAGWGFSGESVIPEGCIDLPVTLGQDQTRVIQMAEFVVIDGRSAYNAIFGRPIIHSFWAIPLTLHQVLKYPTPNGVGTIRGEQTASKECYASALKG
        +K  T   GFSGESV+PEGCIDLPVTLGQDQTRV QMAEFVV+DGRSAYNAIFGRPIIHSF AIP TLHQVLKY TPNGVGT+RGEQTAS+ECYAS LKG
Subjt:  EKPDTAGWGFSGESVIPEGCIDLPVTLGQDQTRVIQMAEFVVIDGRSAYNAIFGRPIIHSFWAIPLTLHQVLKYPTPNGVGTIRGEQTASKECYASALKG

Query:  SSVCALETLAGRDGTLEFEADLPRKEFVAPTEELELVPLLSPEKQL
        +SVCALETL  RDGTLEFEADLP +EF AP EELELVPLLS EKQ+
Subjt:  SSVCALETLAGRDGTLEFEADLPRKEFVAPTEELELVPLLSPEKQL

A0A6J1DT04 uncharacterized protein LOC1110228801.7e-6188.41Show/hide
Query:  GFSGESVIPEGCIDLPVTLGQDQTRVIQMAEFVVIDGRSAYNAIFGRPIIHSFWAIPLTLHQVLKYPTPNGVGTIRGEQTASKECYASALKGSSVCALET
        GFSGESVIPEGCIDLPVTLGQ+QTR+ QMAEFVV+DGRS YNAIFGRPIIHSF AIP TLHQVLKYPTPNGVGT+RGEQ AS+ECYA+ALKG SVCALET
Subjt:  GFSGESVIPEGCIDLPVTLGQDQTRVIQMAEFVVIDGRSAYNAIFGRPIIHSFWAIPLTLHQVLKYPTPNGVGTIRGEQTASKECYASALKGSSVCALET

Query:  LAGRDGTLEFEADLPRKEFVAPTEELELVPLLSPEKQL
        L  RDGTLEFEA+LPRKEF APTEELELVPLLSPEKQL
Subjt:  LAGRDGTLEFEADLPRKEFVAPTEELELVPLLSPEKQL

A0A6J1DYS0 Ribonuclease H8.7e-8769.23Show/hide
Query:  MAEFVVIDGRSAYNAIFGRPIIHSFWAIPLTLHQVLKYPTPNGVGTIRGEQTASKECYASALKGSSVCALETLAGRDGTLEFEADLPRKEFVAPTEELEL
        MAEFVVIDGRSAYNAIFGRPIIHSF  +P TLHQVLKY TPNGVGT+RGEQTAS+ECYASALKGSSVCALE  A  + TLEF+ADLPR+EF APTEELEL
Subjt:  MAEFVVIDGRSAYNAIFGRPIIHSFWAIPLTLHQVLKYPTPNGVGTIRGEQTASKECYASALKGSSVCALETLAGRDGTLEFEADLPRKEFVAPTEELEL

Query:  VPLLSPEKQ----------------------------------------------------------LASVYETDLARSVPVEILDNPSILEPDLMEIGA
        VPLLS EKQ                                                          LAS YETDLARSVPVEILDNPSI EPDLMEIGA
Subjt:  VPLLSPEKQ----------------------------------------------------------LASVYETDLARSVPVEILDNPSILEPDLMEIGA

Query:  PESSWMDPIADFIRGNSPQDPKERRKLVRRAARFVVRDGALYRRGFSLPLLRCLTPEEGL
        PESSWMDPIADFIRGNSPQDPKERRKL  R ARFVVRDGALYRRGFSLPLLRCLTPEEGL
Subjt:  PESSWMDPIADFIRGNSPQDPKERRKLVRRAARFVVRDGALYRRGFSLPLLRCLTPEEGL

A0A6J1DYW5 uncharacterized protein LOC1110243322.4e-6088.32Show/hide
Query:  GFSGESVIPEGCIDLPVTLGQDQTRVIQMAEFVVIDGRSAYNAIFGRPIIHSFWAIPLTLHQVLKYPTPNGVGTIRGEQTASKECYASALKGSSVCALET
        GFSGESVIPEGCIDLPVTLGQDQTRV QM EFVV+DGRS YNAIFGRPIIHSF  IP TLHQVLKY TPNGVGT+RGEQT S+ECYA+ALKGSSVCALET
Subjt:  GFSGESVIPEGCIDLPVTLGQDQTRVIQMAEFVVIDGRSAYNAIFGRPIIHSFWAIPLTLHQVLKYPTPNGVGTIRGEQTASKECYASALKGSSVCALET

Query:  LAGRDGTLEFEADLPRKEFVAPTEELELVPLLSPEKQ
        L  RDGTLE EADLPRKEF APTEELELVPLLSPEKQ
Subjt:  LAGRDGTLEFEADLPRKEFVAPTEELELVPLLSPEKQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGATGTCGCAATTGAAGAAAAGCCCGACACCGCTGGTTGGGGGTTCTCTGGAGAATCGGTCATCCCAGAGGGTTGCATCGACTTGCCGGTCACGCTGGGGCAAGA
CCAAACTCGGGTCATTCAAATGGCCGAGTTCGTGGTAATTGACGGTAGATCTGCCTATAACGCCATCTTTGGGAGACCCATCATCCACTCATTTTGGGCCATTCCCTTAA
CACTTCATCAAGTTTTGAAGTATCCCACCCCCAATGGCGTGGGCACGATCCGAGGAGAACAGACCGCTTCGAAGGAGTGTTATGCCTCCGCACTCAAAGGCTCATCGGTC
TGCGCCCTCGAAACTCTCGCCGGTAGGGATGGGACGCTCGAGTTCGAGGCCGACCTGCCGAGGAAGGAGTTTGTCGCGCCCACTGAGGAGCTCGAGCTTGTTCCTCTGCT
TAGTCCCGAGAAGCAGTTAGCATCGGTGTACGAGACCGACCTGGCCAGGTCGGTCCCCGTCGAGATCTTAGATAATCCCTCGATCTTAGAGCCAGATCTGATGGAGATCG
GCGCTCCAGAATCCTCATGGATGGACCCGATCGCGGACTTCATTAGGGGCAACTCACCACAAGACCCCAAGGAGCGCAGAAAGTTGGTAAGGCGGGCAGCTCGGTTCGTG
GTCCGAGATGGGGCATTGTATCGACGTGGCTTTTCCCTGCCTCTATTGAGATGTCTAACCCCTGAAGAGGGCCTAGTAGAGCATTACGAACCTACGACAAATGAGGAAGA
GCTGCTCCTCAACCTCGACTTGTTGGAAGAAAGAAGAGCAATGGCCCAGCTACGCCTGGCGGAACATCAGGGCAGAATGGCCAGACATTACAATGCCCGCATTCGACCTC
GGGCCTTTCAGGTCGGACATCTGGTCTTAAGGAGGGTCCAAACGCATGTGGGTGCCCTTGATCCGGCCTGGGAGGGCCCGTTTGAGGTCAAGGGCATAGTCCGACCTGGG
ACGTACGTATTGGCCGATCTACAAGGAGACGTCCTCGCGCACCCGTGGAACGCGGAGCACCTGAAGCGTTATTATCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACGATGTCGCAATTGAAGAAAAGCCCGACACCGCTGGTTGGGGGTTCTCTGGAGAATCGGTCATCCCAGAGGGTTGCATCGACTTGCCGGTCACGCTGGGGCAAGA
CCAAACTCGGGTCATTCAAATGGCCGAGTTCGTGGTAATTGACGGTAGATCTGCCTATAACGCCATCTTTGGGAGACCCATCATCCACTCATTTTGGGCCATTCCCTTAA
CACTTCATCAAGTTTTGAAGTATCCCACCCCCAATGGCGTGGGCACGATCCGAGGAGAACAGACCGCTTCGAAGGAGTGTTATGCCTCCGCACTCAAAGGCTCATCGGTC
TGCGCCCTCGAAACTCTCGCCGGTAGGGATGGGACGCTCGAGTTCGAGGCCGACCTGCCGAGGAAGGAGTTTGTCGCGCCCACTGAGGAGCTCGAGCTTGTTCCTCTGCT
TAGTCCCGAGAAGCAGTTAGCATCGGTGTACGAGACCGACCTGGCCAGGTCGGTCCCCGTCGAGATCTTAGATAATCCCTCGATCTTAGAGCCAGATCTGATGGAGATCG
GCGCTCCAGAATCCTCATGGATGGACCCGATCGCGGACTTCATTAGGGGCAACTCACCACAAGACCCCAAGGAGCGCAGAAAGTTGGTAAGGCGGGCAGCTCGGTTCGTG
GTCCGAGATGGGGCATTGTATCGACGTGGCTTTTCCCTGCCTCTATTGAGATGTCTAACCCCTGAAGAGGGCCTAGTAGAGCATTACGAACCTACGACAAATGAGGAAGA
GCTGCTCCTCAACCTCGACTTGTTGGAAGAAAGAAGAGCAATGGCCCAGCTACGCCTGGCGGAACATCAGGGCAGAATGGCCAGACATTACAATGCCCGCATTCGACCTC
GGGCCTTTCAGGTCGGACATCTGGTCTTAAGGAGGGTCCAAACGCATGTGGGTGCCCTTGATCCGGCCTGGGAGGGCCCGTTTGAGGTCAAGGGCATAGTCCGACCTGGG
ACGTACGTATTGGCCGATCTACAAGGAGACGTCCTCGCGCACCCGTGGAACGCGGAGCACCTGAAGCGTTATTATCCTTGA
Protein sequenceShow/hide protein sequence
MDDVAIEEKPDTAGWGFSGESVIPEGCIDLPVTLGQDQTRVIQMAEFVVIDGRSAYNAIFGRPIIHSFWAIPLTLHQVLKYPTPNGVGTIRGEQTASKECYASALKGSSV
CALETLAGRDGTLEFEADLPRKEFVAPTEELELVPLLSPEKQLASVYETDLARSVPVEILDNPSILEPDLMEIGAPESSWMDPIADFIRGNSPQDPKERRKLVRRAARFV
VRDGALYRRGFSLPLLRCLTPEEGLVEHYEPTTNEEELLLNLDLLEERRAMAQLRLAEHQGRMARHYNARIRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEVKGIVRPG
TYVLADLQGDVLAHPWNAEHLKRYYP