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Moc08g32920 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g32920
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Genome locationchr8:23903668..23907905
RNA-Seq ExpressionMoc08g32920
SyntenyMoc08g32920
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]1.1e-2077.27Show/hide
Query:  RRSGRIVSQPDRYVGLTETQVVIPDDGIEDPLTYKHAMEDVDNDKWVKAMDLEMESMDYNSLLERI
        RRSGR+VSQP+RY+GLTETQVVIPDDG+EDPL+YK AM DVD D+WVKAMDLEMESM +NS+ E +
Subjt:  RRSGRIVSQPDRYVGLTETQVVIPDDGIEDPLTYKHAMEDVDNDKWVKAMDLEMESMDYNSLLERI
KAA0058278.1 gag/pol protein [Cucumis melo var. makuwa]1.1e-2077.27Show/hide
Query:  RRSGRIVSQPDRYVGLTETQVVIPDDGIEDPLTYKHAMEDVDNDKWVKAMDLEMESMDYNSLLERI
        RRSGR+VSQP+RY+GLTETQVVIPDDG+EDPL+YK AM DVD D+WVKAMDLEMESM +NS+ E +
Subjt:  RRSGRIVSQPDRYVGLTETQVVIPDDGIEDPLTYKHAMEDVDNDKWVKAMDLEMESMDYNSLLERI
KAA0064289.1 gag/pol protein [Cucumis melo var. makuwa]4.8e-2175.76Show/hide
Query:  RRSGRIVSQPDRYVGLTETQVVIPDDGIEDPLTYKHAMEDVDNDKWVKAMDLEMESMDYNSLLERI
        RRSGR+VSQP+RY+GLTETQVVIPDDG+EDPL+YKHAM  +D D+WVKAMDLE+ESMD+NS+ E +
Subjt:  RRSGRIVSQPDRYVGLTETQVVIPDDGIEDPLTYKHAMEDVDNDKWVKAMDLEMESMDYNSLLERI
TYK15984.1 gag/pol protein [Cucumis melo var. makuwa]1.1e-2077.27Show/hide
Query:  RRSGRIVSQPDRYVGLTETQVVIPDDGIEDPLTYKHAMEDVDNDKWVKAMDLEMESMDYNSLLERI
        RRSGR+VSQP+RY+GLTETQVVIPDDG+EDPL+YK AM DVD D+WVKAMDLEMESM +NS+ E +
Subjt:  RRSGRIVSQPDRYVGLTETQVVIPDDGIEDPLTYKHAMEDVDNDKWVKAMDLEMESMDYNSLLERI
TYK20422.1 gag/pol protein [Cucumis melo var. makuwa]3.6e-2180.3Show/hide
Query:  RRSGRIVSQPDRYVGLTETQVVIPDDGIEDPLTYKHAMEDVDNDKWVKAMDLEMESMDYNSLLERI
        RRSGRIVSQP+RY+GLTETQVVIPDDG+EDPL+YK AM DVD D+WVKAMDLEMESM +NSL E +
Subjt:  RRSGRIVSQPDRYVGLTETQVVIPDDGIEDPLTYKHAMEDVDNDKWVKAMDLEMESMDYNSLLERI
TrEMBL top hitse value%identityAlignment
A0A5A7TZD0 Gag/pol protein5.1e-2177.27Show/hide
Query:  RRSGRIVSQPDRYVGLTETQVVIPDDGIEDPLTYKHAMEDVDNDKWVKAMDLEMESMDYNSLLERI
        RRSGR+VSQP+RY+GLTETQVVIPDDG+EDPL+YK AM DVD D+WVKAMDLEMESM +NS+ E +
Subjt:  RRSGRIVSQPDRYVGLTETQVVIPDDGIEDPLTYKHAMEDVDNDKWVKAMDLEMESMDYNSLLERI
A0A5D3BPE3 Gag/pol protein2.3e-2175.76Show/hide
Query:  RRSGRIVSQPDRYVGLTETQVVIPDDGIEDPLTYKHAMEDVDNDKWVKAMDLEMESMDYNSLLERI
        RRSGR+VSQP+RY+GLTETQVVIPDDG+EDPL+YKHAM  +D D+WVKAMDLE+ESMD+NS+ E +
Subjt:  RRSGRIVSQPDRYVGLTETQVVIPDDGIEDPLTYKHAMEDVDNDKWVKAMDLEMESMDYNSLLERI
A0A5D3BUN8 Gag/pol protein5.1e-2177.27Show/hide
Query:  RRSGRIVSQPDRYVGLTETQVVIPDDGIEDPLTYKHAMEDVDNDKWVKAMDLEMESMDYNSLLERI
        RRSGR+VSQP+RY+GLTETQVVIPDDG+EDPL+YK AM DVD D+WVKAMDLEMESM +NS+ E +
Subjt:  RRSGRIVSQPDRYVGLTETQVVIPDDGIEDPLTYKHAMEDVDNDKWVKAMDLEMESMDYNSLLERI
A0A5D3DA25 Gag/pol protein1.8e-2180.3Show/hide
Query:  RRSGRIVSQPDRYVGLTETQVVIPDDGIEDPLTYKHAMEDVDNDKWVKAMDLEMESMDYNSLLERI
        RRSGRIVSQP+RY+GLTETQVVIPDDG+EDPL+YK AM DVD D+WVKAMDLEMESM +NSL E +
Subjt:  RRSGRIVSQPDRYVGLTETQVVIPDDGIEDPLTYKHAMEDVDNDKWVKAMDLEMESMDYNSLLERI
A0A5D3DWD1 Gag/pol protein5.1e-2177.27Show/hide
Query:  RRSGRIVSQPDRYVGLTETQVVIPDDGIEDPLTYKHAMEDVDNDKWVKAMDLEMESMDYNSLLERI
        RRSGRIVSQP+RY+GLTETQ+VIPDDG+EDPL+YK AM DVD D+WVKAMDLEMESM +NS+ E +
Subjt:  RRSGRIVSQPDRYVGLTETQVVIPDDGIEDPLTYKHAMEDVDNDKWVKAMDLEMESMDYNSLLERI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.7e-0642.37Show/hide
Query:  EMESMDYNSLLERIVARVRPWSNHILSYVGRLQLIRSVLQSCYVYWTSVFLLSMQIIRE
        +M + DY  L+E+I  R+  W+   LS+ GRLQLI SV+ S   +W S F L    I+E
Subjt:  EMESMDYNSLLERIVARVRPWSNHILSYVGRLQLIRSVLQSCYVYWTSVFLLSMQIIRE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGCATCGACGTAGTGGGAGGATTGTATCTCAACCTGACCGTTATGTGGGTTTAACTGAAACCCAAGTTGTCATACCTGATGATGGCATCGAAGATCCATTGACCTA
CAAACATGCAATGGAAGATGTCGACAATGACAAATGGGTAAAAGCCATGGACTTGGAAATGGAGTCTATGGATTATAATTCCTTGTTAGAGCGCATTGTGGCGAGAGTTC
GCCCCTGGTCAAATCATATATTGTCGTATGTTGGAAGACTTCAATTAATTAGGTCGGTTCTCCAAAGTTGTTATGTGTATTGGACTAGTGTTTTTCTGTTGTCGATGCAA
ATTATTCGCGAGAGATATGGGGAGATGATTATTCATGATGGTAACAGCTATTGTCTTGTGAGAGTCTCTGATTTCTTAGGTCCAGTACTAGACGGTGATAAAGATGTTAT
TAGGTCATCTCCTCAGCTAATTGGACTTCCACCATACGAATCAGAAACTGACTCGTCACTTATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGCATCGACGTAGTGGGAGGATTGTATCTCAACCTGACCGTTATGTGGGTTTAACTGAAACCCAAGTTGTCATACCTGATGATGGCATCGAAGATCCATTGACCTA
CAAACATGCAATGGAAGATGTCGACAATGACAAATGGGTAAAAGCCATGGACTTGGAAATGGAGTCTATGGATTATAATTCCTTGTTAGAGCGCATTGTGGCGAGAGTTC
GCCCCTGGTCAAATCATATATTGTCGTATGTTGGAAGACTTCAATTAATTAGGTCGGTTCTCCAAAGTTGTTATGTGTATTGGACTAGTGTTTTTCTGTTGTCGATGCAA
ATTATTCGCGAGAGATATGGGGAGATGATTATTCATGATGGTAACAGCTATTGTCTTGTGAGAGTCTCTGATTTCTTAGGTCCAGTACTAGACGGTGATAAAGATGTTAT
TAGGTCATCTCCTCAGCTAATTGGACTTCCACCATACGAATCAGAAACTGACTCGTCACTTATCTAG
Protein sequenceShow/hide protein sequence
MVHRRSGRIVSQPDRYVGLTETQVVIPDDGIEDPLTYKHAMEDVDNDKWVKAMDLEMESMDYNSLLERIVARVRPWSNHILSYVGRLQLIRSVLQSCYVYWTSVFLLSMQ
IIRERYGEMIIHDGNSYCLVRVSDFLGPVLDGDKDVIRSSPQLIGLPPYESETDSSLI