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Moc08g32930 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g32930
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Genome locationchr8:23909260..23910545
RNA-Seq ExpressionMoc08g32930
SyntenyMoc08g32930
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]3.5e-2738.31Show/hide
Query:  IDDLRFVLQEDCPQAPAPN--------------ANEKAKVYILASIFDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKC---GPLKCGRVERDR
        IDDLRFVL E+CPQ PA N              ANEKA+ YILAS+ +VLAKKHE  +TA+EIMDSLQ MFGQ S Q +H+ALK      +  G   R+ 
Subjt:  IDDLRFVLQEDCPQAPAPN--------------ANEKAKVYILASIFDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKC---GPLKCGRVERDR

Query:  -------------------------------------------------------------------------------HRRANLGSTSGVKSVPSSFGS
                                                                                        R+ + GSTSG KS+PSS G+
Subjt:  -------------------------------------------------------------------------------HRRANLGSTSGVKSVPSSFGS

Query:  KIFKKKKVTGKRPRPDLTAA-TAKKGKAKVAKKGKCFHCNMDGHWKRNYPKYLAEKKRQRR
        K +KKKK  G+  + +L AA T KK K   A KG CFHCN +GHWKRN PKYLAEKK+ ++
Subjt:  KIFKKKKVTGKRPRPDLTAA-TAKKGKAKVAKKGKCFHCNMDGHWKRNYPKYLAEKKRQRR

KAA0060254.1 gag/pol protein [Cucumis melo var. makuwa]4.4e-3044.91Show/hide
Query:  IDDLRFVLQEDCPQAPAPNA--------------NEKAKVYILASIFDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKC---GPLKCGRVERDR
        IDDL+FVL E+CPQ PA NA              NEK + YILAS+ +VLAKKHE  +TA+EIMDSLQ MFGQ S Q  H+ALK      +  G   R+ 
Subjt:  IDDLRFVLQEDCPQAPAPNA--------------NEKAKVYILASIFDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKC---GPLKCGRVERDR

Query:  ----------------------------------HRRANLGSTSGVKSVPSSFGSKIFKKKKVTGKRPRPDLTAA-TAKKGKAKVAKKGKCFHCNMDGHW
                                           R+ + GSTSG KS+PSS G+K +KKKK  G+  + +L AA T KK K   A KG CFH N +GHW
Subjt:  ----------------------------------HRRANLGSTSGVKSVPSSFGSKIFKKKKVTGKRPRPDLTAA-TAKKGKAKVAKKGKCFHCNMDGHW

Query:  KRNYPKYLAEKKRQRR
        KRN PKYLAEKK+ ++
Subjt:  KRNYPKYLAEKKRQRR

KAA0066490.1 gag/pol protein [Cucumis melo var. makuwa]2.7e-2738.31Show/hide
Query:  IDDLRFVLQEDCPQAPAPN--------------ANEKAKVYILASIFDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKC---GPLKCGRVERDR
        IDDLRFVL E+CPQ PA N              ANEKA+ YILAS+ +VLAKKHE  +TA+EIMDSLQ MFGQ S Q +H+ALK      +  G   R+ 
Subjt:  IDDLRFVLQEDCPQAPAPN--------------ANEKAKVYILASIFDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKC---GPLKCGRVERDR

Query:  -------------------------------------------------------------------------------HRRANLGSTSGVKSVPSSFGS
                                                                                        R+ + GSTSG KS+PSS G+
Subjt:  -------------------------------------------------------------------------------HRRANLGSTSGVKSVPSSFGS

Query:  KIFKKKKVTGKRPRPDLTAA-TAKKGKAKVAKKGKCFHCNMDGHWKRNYPKYLAEKKRQRR
        K +KKKK  G+  + +L AA T KK K   A KG CFHCN +GHWKRN PKYLAEKK+ ++
Subjt:  KIFKKKKVTGKRPRPDLTAA-TAKKGKAKVAKKGKCFHCNMDGHWKRNYPKYLAEKKRQRR

KAA0067084.1 gag/pol protein [Cucumis melo var. makuwa]2.7e-2737.79Show/hide
Query:  IDDLRFVLQEDCPQAPAPN--------------ANEKAKVYILASIFDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKCGPLKCGRVERDRH--
        IDDLRFVL E+CPQ PA N              ANEKA+ YILAS+ +VLAKKHE  +TA+EIMDSLQ MFGQ S Q +H+ALK   +   R+ ++    
Subjt:  IDDLRFVLQEDCPQAPAPN--------------ANEKAKVYILASIFDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKCGPLKCGRVERDRH--

Query:  ----------------------------------------------------------------------------------RRANLGSTSGVKSVPSSF
                                                                                          R+ + GSTSG KS+PSS 
Subjt:  ----------------------------------------------------------------------------------RRANLGSTSGVKSVPSSF

Query:  GSKIFKKKKVTGKRPRPDLTAATAKKGKAKVAKKGKCFHCNMDGHWKRNYPKYLAEKKRQRR
        G+K +KKKK  G+  + +LTAA   K KAK A KG CFHCN +GHWKRN PKYLAEK + ++
Subjt:  GSKIFKKKKVTGKRPRPDLTAATAKKGKAKVAKKGKCFHCNMDGHWKRNYPKYLAEKKRQRR

TYJ97618.1 gag/pol protein [Cucumis melo var. makuwa]4.4e-3044.91Show/hide
Query:  IDDLRFVLQEDCPQAPAPNA--------------NEKAKVYILASIFDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKC---GPLKCGRVERDR
        IDDL+FVL E+CPQ PA NA              NEK + YILAS+ +VLAKKHE  +TA+EIMDSLQ MFGQ S Q  H+ALK      +  G   R+ 
Subjt:  IDDLRFVLQEDCPQAPAPNA--------------NEKAKVYILASIFDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKC---GPLKCGRVERDR

Query:  ----------------------------------HRRANLGSTSGVKSVPSSFGSKIFKKKKVTGKRPRPDLTAA-TAKKGKAKVAKKGKCFHCNMDGHW
                                           R+ + GSTSG KS+PSS G+K +KKKK  G+  + +L AA T KK K   A KG CFH N +GHW
Subjt:  ----------------------------------HRRANLGSTSGVKSVPSSFGSKIFKKKKVTGKRPRPDLTAA-TAKKGKAKVAKKGKCFHCNMDGHW

Query:  KRNYPKYLAEKKRQRR
        KRN PKYLAEKK+ ++
Subjt:  KRNYPKYLAEKKRQRR

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein1.7e-2738.31Show/hide
Query:  IDDLRFVLQEDCPQAPAPN--------------ANEKAKVYILASIFDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKC---GPLKCGRVERDR
        IDDLRFVL E+CPQ PA N              ANEKA+ YILAS+ +VLAKKHE  +TA+EIMDSLQ MFGQ S Q +H+ALK      +  G   R+ 
Subjt:  IDDLRFVLQEDCPQAPAPN--------------ANEKAKVYILASIFDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKC---GPLKCGRVERDR

Query:  -------------------------------------------------------------------------------HRRANLGSTSGVKSVPSSFGS
                                                                                        R+ + GSTSG KS+PSS G+
Subjt:  -------------------------------------------------------------------------------HRRANLGSTSGVKSVPSSFGS

Query:  KIFKKKKVTGKRPRPDLTAA-TAKKGKAKVAKKGKCFHCNMDGHWKRNYPKYLAEKKRQRR
        K +KKKK  G+  + +L AA T KK K   A KG CFHCN +GHWKRN PKYLAEKK+ ++
Subjt:  KIFKKKKVTGKRPRPDLTAA-TAKKGKAKVAKKGKCFHCNMDGHWKRNYPKYLAEKKRQRR

A0A5A7UYX7 Gag/pol protein2.1e-3044.91Show/hide
Query:  IDDLRFVLQEDCPQAPAPNA--------------NEKAKVYILASIFDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKC---GPLKCGRVERDR
        IDDL+FVL E+CPQ PA NA              NEK + YILAS+ +VLAKKHE  +TA+EIMDSLQ MFGQ S Q  H+ALK      +  G   R+ 
Subjt:  IDDLRFVLQEDCPQAPAPNA--------------NEKAKVYILASIFDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKC---GPLKCGRVERDR

Query:  ----------------------------------HRRANLGSTSGVKSVPSSFGSKIFKKKKVTGKRPRPDLTAA-TAKKGKAKVAKKGKCFHCNMDGHW
                                           R+ + GSTSG KS+PSS G+K +KKKK  G+  + +L AA T KK K   A KG CFH N +GHW
Subjt:  ----------------------------------HRRANLGSTSGVKSVPSSFGSKIFKKKKVTGKRPRPDLTAA-TAKKGKAKVAKKGKCFHCNMDGHW

Query:  KRNYPKYLAEKKRQRR
        KRN PKYLAEKK+ ++
Subjt:  KRNYPKYLAEKKRQRR

A0A5A7VH46 Gag/pol protein1.3e-2738.31Show/hide
Query:  IDDLRFVLQEDCPQAPAPN--------------ANEKAKVYILASIFDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKC---GPLKCGRVERDR
        IDDLRFVL E+CPQ PA N              ANEKA+ YILAS+ +VLAKKHE  +TA+EIMDSLQ MFGQ S Q +H+ALK      +  G   R+ 
Subjt:  IDDLRFVLQEDCPQAPAPN--------------ANEKAKVYILASIFDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKC---GPLKCGRVERDR

Query:  -------------------------------------------------------------------------------HRRANLGSTSGVKSVPSSFGS
                                                                                        R+ + GSTSG KS+PSS G+
Subjt:  -------------------------------------------------------------------------------HRRANLGSTSGVKSVPSSFGS

Query:  KIFKKKKVTGKRPRPDLTAA-TAKKGKAKVAKKGKCFHCNMDGHWKRNYPKYLAEKKRQRR
        K +KKKK  G+  + +L AA T KK K   A KG CFHCN +GHWKRN PKYLAEKK+ ++
Subjt:  KIFKKKKVTGKRPRPDLTAA-TAKKGKAKVAKKGKCFHCNMDGHWKRNYPKYLAEKKRQRR

A0A5A7VI97 Gag/pol protein1.3e-2737.79Show/hide
Query:  IDDLRFVLQEDCPQAPAPN--------------ANEKAKVYILASIFDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKCGPLKCGRVERDRH--
        IDDLRFVL E+CPQ PA N              ANEKA+ YILAS+ +VLAKKHE  +TA+EIMDSLQ MFGQ S Q +H+ALK   +   R+ ++    
Subjt:  IDDLRFVLQEDCPQAPAPN--------------ANEKAKVYILASIFDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKCGPLKCGRVERDRH--

Query:  ----------------------------------------------------------------------------------RRANLGSTSGVKSVPSSF
                                                                                          R+ + GSTSG KS+PSS 
Subjt:  ----------------------------------------------------------------------------------RRANLGSTSGVKSVPSSF

Query:  GSKIFKKKKVTGKRPRPDLTAATAKKGKAKVAKKGKCFHCNMDGHWKRNYPKYLAEKKRQRR
        G+K +KKKK  G+  + +LTAA   K KAK A KG CFHCN +GHWKRN PKYLAEK + ++
Subjt:  GSKIFKKKKVTGKRPRPDLTAATAKKGKAKVAKKGKCFHCNMDGHWKRNYPKYLAEKKRQRR

A0A5D3BHG7 Gag/pol protein2.1e-3044.91Show/hide
Query:  IDDLRFVLQEDCPQAPAPNA--------------NEKAKVYILASIFDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKC---GPLKCGRVERDR
        IDDL+FVL E+CPQ PA NA              NEK + YILAS+ +VLAKKHE  +TA+EIMDSLQ MFGQ S Q  H+ALK      +  G   R+ 
Subjt:  IDDLRFVLQEDCPQAPAPNA--------------NEKAKVYILASIFDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKC---GPLKCGRVERDR

Query:  ----------------------------------HRRANLGSTSGVKSVPSSFGSKIFKKKKVTGKRPRPDLTAA-TAKKGKAKVAKKGKCFHCNMDGHW
                                           R+ + GSTSG KS+PSS G+K +KKKK  G+  + +L AA T KK K   A KG CFH N +GHW
Subjt:  ----------------------------------HRRANLGSTSGVKSVPSSFGSKIFKKKKVTGKRPRPDLTAA-TAKKGKAKVAKKGKCFHCNMDGHW

Query:  KRNYPKYLAEKKRQRR
        KRN PKYLAEKK+ ++
Subjt:  KRNYPKYLAEKKRQRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAGACGAAACAGGCCGCGCAACAGCACCATGACGCTATGCAGCAACGCTATGGTGCTGTAAGGACAGCACACAGTGCCACGACACTGCATTGTAGCGCCTCGGC
GCTGTGCCTTAGCGCAATGGCGCTGCTGCTGCAGGGCCGTATAGATGATCTTAGGTTCGTCTTGCAAGAGGATTGTCCTCAAGCTCCTGCGCCTAACGCCAATGAAAAGG
CTAAGGTCTACATCTTGGCGAGCATATTTGATGTGCTTGCTAAGAAGCACGAGGACACGGTCACCGCTAAGGAAATCATGGACTCGCTGCAGAGCATGTTTGGACAACCG
TCCTCACAGGCTCGACATGAAGCCCTTAAATGTGGTCCACTTAAATGTGGCAGAGTCGAACGAGACCGTCATAGACGAGCAAACTTAGGTTCGACCTCTGGAGTCAAGTC
TGTGCCATCTTCTTTTGGAAGTAAGATTTTCAAGAAGAAGAAGGTCACTGGTAAGAGGCCTAGACCTGACCTCACTGCTGCCACTGCCAAGAAAGGCAAGGCCAAGGTTG
CAAAGAAAGGAAAGTGTTTCCACTGCAACATGGACGGGCATTGGAAGCGCAACTACCCGAAATACTTGGCCGAAAAGAAGAGACAACGAAGGGAAGTAGTTCCTGGAGGC
AGCTTGACGCTGGAGAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAGACGAAACAGGCCGCGCAACAGCACCATGACGCTATGCAGCAACGCTATGGTGCTGTAAGGACAGCACACAGTGCCACGACACTGCATTGTAGCGCCTCGGC
GCTGTGCCTTAGCGCAATGGCGCTGCTGCTGCAGGGCCGTATAGATGATCTTAGGTTCGTCTTGCAAGAGGATTGTCCTCAAGCTCCTGCGCCTAACGCCAATGAAAAGG
CTAAGGTCTACATCTTGGCGAGCATATTTGATGTGCTTGCTAAGAAGCACGAGGACACGGTCACCGCTAAGGAAATCATGGACTCGCTGCAGAGCATGTTTGGACAACCG
TCCTCACAGGCTCGACATGAAGCCCTTAAATGTGGTCCACTTAAATGTGGCAGAGTCGAACGAGACCGTCATAGACGAGCAAACTTAGGTTCGACCTCTGGAGTCAAGTC
TGTGCCATCTTCTTTTGGAAGTAAGATTTTCAAGAAGAAGAAGGTCACTGGTAAGAGGCCTAGACCTGACCTCACTGCTGCCACTGCCAAGAAAGGCAAGGCCAAGGTTG
CAAAGAAAGGAAAGTGTTTCCACTGCAACATGGACGGGCATTGGAAGCGCAACTACCCGAAATACTTGGCCGAAAAGAAGAGACAACGAAGGGAAGTAGTTCCTGGAGGC
AGCTTGACGCTGGAGAGATGA
Protein sequenceShow/hide protein sequence
MKKTKQAAQQHHDAMQQRYGAVRTAHSATTLHCSASALCLSAMALLLQGRIDDLRFVLQEDCPQAPAPNANEKAKVYILASIFDVLAKKHEDTVTAKEIMDSLQSMFGQP
SSQARHEALKCGPLKCGRVERDRHRRANLGSTSGVKSVPSSFGSKIFKKKKVTGKRPRPDLTAATAKKGKAKVAKKGKCFHCNMDGHWKRNYPKYLAEKKRQRREVVPGG
SLTLER