; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc08g33370 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g33370
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr8:24236798..24238297
RNA-Seq ExpressionMoc08g33370
SyntenyMoc08g33370
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN65849.1 hypothetical protein VITISV_038148 [Vitis vinifera]2.1e-1034.78Show/hide
Query:  MQVKDLLTCKKIH-KTLGERPGDMTDKAWNEMDEQTIANIRMTLSMGVCSLVAKETTAKELLKALQDSWETMKTAVSNSLGENSLKFSAICDVALFEEAW
        MQ++D L  +K+H   LG +P  M  + W  +D Q +  IR+TLS  V   V KE T  +L+KAL   WE M+ AVSNS G+  LK++ I D+ L EE  
Subjt:  MQVKDLLTCKKIH-KTLGERPGDMTDKAWNEMDEQTIANIRMTLSMGVCSLVAKETTAKELLKALQDSWETMKTAVSNSLGENSLKFSAICDVALFEEAW

Query:  RKLGKMSATTSGAENGVESVLVAQIKGKGKMKYNGKQQHRNNKLKEDQENEDTLNYVLADV
        R+        +G  +G  S L  + +G+G       Q+H      + +  +D+ N V  +V
Subjt:  RKLGKMSATTSGAENGVESVLVAQIKGKGKMKYNGKQQHRNNKLKEDQENEDTLNYVLADV

RVW28359.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]7.2e-1130.87Show/hide
Query:  MQVKDLLTCKKIH-KTLGERPGDMTDKAWNEMDEQTIANIRMTLSMGVCSLVAKETTAKELLKALQD------------------SWETMKTAVSNSLGE
        MQ++D L  +K+H   LG +P  M  + W  +D Q +  IR+TLS  V   + KE T  +L+KAL +                  SWE M+  VSNS G+
Subjt:  MQVKDLLTCKKIH-KTLGERPGDMTDKAWNEMDEQTIANIRMTLSMGVCSLVAKETTAKELLKALQD------------------SWETMKTAVSNSLGE

Query:  NSLKFSAICDVALFEEAWRKLGKMSATTSGAENGVESVLVAQIKGKGKMKYNGKQQH--RNNKLKEDQENEDTLNYVLADVLACIEENRWKLMRGSEVVV
          LK++ I D+ L EE       +  T +G  +G  S L  +I+G+ +     K  H  R  K  + +  +D+ N V  +  A  +  +  L  GS + V
Subjt:  NSLKFSAICDVALFEEAWRKLGKMSATTSGAENGVESVLVAQIKGKGKMKYNGKQQH--RNNKLKEDQENEDTLNYVLADVLACIEENRWKLMRGSEVVV

Query:  VGYRKASVYVLRFSVARELERQFRAPVVRR
        VG R   + +   SV   LE+    P +RR
Subjt:  VGYRKASVYVLRFSVARELERQFRAPVVRR

RVW89488.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]6.1e-1031.28Show/hide
Query:  MQVKDLLTCKKIH-KTLGERPGDMTDKAWNEMDEQTIANIRMTLSMGVCSLVAKETTAKELLKALQD------------------SWETMKTAVSNSLGE
        MQ++D L  +K+H   LG +P  M  K W  +D Q I  IR+T+S  V   V KE T  +L+KAL +                  SWE M+ A+SNS+G+
Subjt:  MQVKDLLTCKKIH-KTLGERPGDMTDKAWNEMDEQTIANIRMTLSMGVCSLVAKETTAKELLKALQD------------------SWETMKTAVSNSLGE

Query:  NSLKFSAICDVALFEEAWRKLGKMSATTSGAENGVESVLVAQIKGKGKMKYNGKQQHRNNKLKEDQENEDTLNYVLADV
          LK++ I D+ L +E  R+         G  +G  S L  + + +G  K   K   + N+       +D+ N V+ +V
Subjt:  NSLKFSAICDVALFEEAWRKLGKMSATTSGAENGVESVLVAQIKGKGKMKYNGKQQHRNNKLKEDQENEDTLNYVLADV

RVW95710.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.2e-1032.84Show/hide
Query:  MQVKDLLTCKKIH-KTLGERPGDMTDKAWNEMDEQTIANIRMTLSMGVCSLVAKETTAKELLKALQD------------------SWETMKTAVSNSLGE
        MQ++D L  +K+H   LG +P +M  + W  +D Q +  IR+TLS  V   V KE T  +L+KAL +                  SWE M+ AVSNS G+
Subjt:  MQVKDLLTCKKIH-KTLGERPGDMTDKAWNEMDEQTIANIRMTLSMGVCSLVAKETTAKELLKALQD------------------SWETMKTAVSNSLGE

Query:  NSLKFSAICDVALFEEAWRKLGKMSATTSGAENGVESVLVAQIKGKGKMKYNGKQQHRNNKLKEDQENEDT-LNYVLADVLACIEENRWKLMRGSEVVVV
          LK++ I D+ L EE  ++        +G  +G  S L  + +G+G  K   K   + N  ++D  N  T  NYV+ D        +  L  GS + VV
Subjt:  NSLKFSAICDVALFEEAWRKLGKMSATTSGAENGVESVLVAQIKGKGKMKYNGKQQHRNNKLKEDQENEDT-LNYVLADVLACIEENRWKLMRGSEVVVV

Query:  G
        G
Subjt:  G

RVX11634.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.9e-1132.96Show/hide
Query:  MQVKDLLTCKKIH-KTLGERPGDMTDKAWNEMDEQTIANIRMTLSMGVCSLVAKETTAKELLKALQD------------------SWETMKTAVSNSLGE
        MQ++D L  +K+H   LG +P  M  + W  +D Q +  IR+TLS  V   V KE T  +L+KAL +                  SWE M+ AVSNS G+
Subjt:  MQVKDLLTCKKIH-KTLGERPGDMTDKAWNEMDEQTIANIRMTLSMGVCSLVAKETTAKELLKALQD------------------SWETMKTAVSNSLGE

Query:  NSLKFSAICDVALFEEAWRKLGKMSATTSGAENGVESVLVAQIKGKGKMKYNGKQQHRNNKLKEDQENEDTLNYVLADV
          LK++ I D+ L EE  R+        +G  +G  S L  +I+G+G  K   K   + N+       +D+ N V+ +V
Subjt:  NSLKFSAICDVALFEEAWRKLGKMSATTSGAENGVESVLVAQIKGKGKMKYNGKQQHRNNKLKEDQENEDTLNYVLADV

TrEMBL top hitse value%identityAlignment
A0A2N9IKQ5 Uncharacterized protein4.6e-1130.85Show/hide
Query:  MQVKDLLTCKKIH-KTLGERPGDMTDKAWNEMDEQTIANIRMTLSMGVCSLVAKETTAKELLKAL------------------------QDSWETMKTAV
        MQ++D L  KK+H   LGE+P DM D  W  +D Q +  IR+TLS  V   V KE T  EL+ AL                          SWE M+ AV
Subjt:  MQVKDLLTCKKIH-KTLGERPGDMTDKAWNEMDEQTIANIRMTLSMGVCSLVAKETTAKELLKAL------------------------QDSWETMKTAV

Query:  SNSLGENSLKFSAICDVALFEEAWRKLGKMSATTSGAENGVESVLVAQIKGKGKMKYNGKQQHRNNKLKEDQENEDTLNYVLADVLACIEENRWKLMRGS
        SNS G+  LK++ I D+ L EE  R+        +G  +   S L  + +G+GK +   + + ++ K +   +    L          I +N W+L + +
Subjt:  SNSLGENSLKFSAICDVALFEEAWRKLGKMSATTSGAENGVESVLVAQIKGKGKMKYNGKQQHRNNKLKEDQENEDTLNYVLADVLACIEENRWKLMRGS

Query:  E
        E
Subjt:  E

A0A438CYS1 Retrovirus-related Pol polyprotein from transposon TNT 1-943.5e-1130.87Show/hide
Query:  MQVKDLLTCKKIH-KTLGERPGDMTDKAWNEMDEQTIANIRMTLSMGVCSLVAKETTAKELLKALQD------------------SWETMKTAVSNSLGE
        MQ++D L  +K+H   LG +P  M  + W  +D Q +  IR+TLS  V   + KE T  +L+KAL +                  SWE M+  VSNS G+
Subjt:  MQVKDLLTCKKIH-KTLGERPGDMTDKAWNEMDEQTIANIRMTLSMGVCSLVAKETTAKELLKALQD------------------SWETMKTAVSNSLGE

Query:  NSLKFSAICDVALFEEAWRKLGKMSATTSGAENGVESVLVAQIKGKGKMKYNGKQQH--RNNKLKEDQENEDTLNYVLADVLACIEENRWKLMRGSEVVV
          LK++ I D+ L EE       +  T +G  +G  S L  +I+G+ +     K  H  R  K  + +  +D+ N V  +  A  +  +  L  GS + V
Subjt:  NSLKFSAICDVALFEEAWRKLGKMSATTSGAENGVESVLVAQIKGKGKMKYNGKQQH--RNNKLKEDQENEDTLNYVLADVLACIEENRWKLMRGSEVVV

Query:  VGYRKASVYVLRFSVARELERQFRAPVVRR
        VG R   + +   SV   LE+    P +RR
Subjt:  VGYRKASVYVLRFSVARELERQFRAPVVRR

A0A438IG53 Retrovirus-related Pol polyprotein from transposon TNT 1-946.0e-1132.84Show/hide
Query:  MQVKDLLTCKKIH-KTLGERPGDMTDKAWNEMDEQTIANIRMTLSMGVCSLVAKETTAKELLKALQD------------------SWETMKTAVSNSLGE
        MQ++D L  +K+H   LG +P +M  + W  +D Q +  IR+TLS  V   V KE T  +L+KAL +                  SWE M+ AVSNS G+
Subjt:  MQVKDLLTCKKIH-KTLGERPGDMTDKAWNEMDEQTIANIRMTLSMGVCSLVAKETTAKELLKALQD------------------SWETMKTAVSNSLGE

Query:  NSLKFSAICDVALFEEAWRKLGKMSATTSGAENGVESVLVAQIKGKGKMKYNGKQQHRNNKLKEDQENEDT-LNYVLADVLACIEENRWKLMRGSEVVVV
          LK++ I D+ L EE  ++        +G  +G  S L  + +G+G  K   K   + N  ++D  N  T  NYV+ D        +  L  GS + VV
Subjt:  NSLKFSAICDVALFEEAWRKLGKMSATTSGAENGVESVLVAQIKGKGKMKYNGKQQHRNNKLKEDQENEDT-LNYVLADVLACIEENRWKLMRGSEVVVV

Query:  G
        G
Subjt:  G

A0A438JRQ0 Retrovirus-related Pol polyprotein from transposon TNT 1-949.2e-1232.96Show/hide
Query:  MQVKDLLTCKKIH-KTLGERPGDMTDKAWNEMDEQTIANIRMTLSMGVCSLVAKETTAKELLKALQD------------------SWETMKTAVSNSLGE
        MQ++D L  +K+H   LG +P  M  + W  +D Q +  IR+TLS  V   V KE T  +L+KAL +                  SWE M+ AVSNS G+
Subjt:  MQVKDLLTCKKIH-KTLGERPGDMTDKAWNEMDEQTIANIRMTLSMGVCSLVAKETTAKELLKALQD------------------SWETMKTAVSNSLGE

Query:  NSLKFSAICDVALFEEAWRKLGKMSATTSGAENGVESVLVAQIKGKGKMKYNGKQQHRNNKLKEDQENEDTLNYVLADV
          LK++ I D+ L EE  R+        +G  +G  S L  +I+G+G  K   K   + N+       +D+ N V+ +V
Subjt:  NSLKFSAICDVALFEEAWRKLGKMSATTSGAENGVESVLVAQIKGKGKMKYNGKQQHRNNKLKEDQENEDTLNYVLADV

A0A7N2LJ68 Uncharacterized protein7.8e-1136.43Show/hide
Query:  MQVKDLLTCKKIH-KTLGERPGDMTDKAWNEMDEQTIANIRMTLSMGVCSLVAKETTAKELLKALQDSWETMKTAVSNSLGENSLKFSAICDVALFEEAW
        MQ++D L  +K+H   LG +P  M  K W  +D Q +  I++TLS  V   V KE T  +L+KAL   WE M+ AV+NS  +  LK++ I D+ L EE  
Subjt:  MQVKDLLTCKKIH-KTLGERPGDMTDKAWNEMDEQTIANIRMTLSMGVCSLVAKETTAKELLKALQDSWETMKTAVSNSLGENSLKFSAICDVALFEEAW

Query:  RKLGKMSATTSGAENGVESVLVAQIKGKG
        ++        +G  +G  S L  + +G+G
Subjt:  RKLGKMSATTSGAENGVESVLVAQIKGKG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G29785.1 unknown protein7.4e-0634.25Show/hide
Query:  MQVKDLLTCKKIHKTLGERPGDMTDKAWNEMDEQTIANIRMTLSMGVCSLVAKETTAKELLKALQDSWETMKT
        M+++D L  KK+H+ LG++   M+   WN +  Q +  IR+T+S  +   VAKE +   L+K L D ++   T
Subjt:  MQVKDLLTCKKIHKTLGERPGDMTDKAWNEMDEQTIANIRMTLSMGVCSLVAKETTAKELLKALQDSWETMKT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGTAAAAGATCTTCTTACGTGCAAGAAGATACACAAGACTTTGGGGGAGAGACCAGGGGATATGACAGACAAAGCTTGGAATGAGATGGATGAGCAGACCATTGC
AAATATCAGAATGACATTATCAATGGGGGTATGCAGTCTCGTGGCGAAAGAGACGACTGCAAAAGAGTTGTTGAAGGCCTTGCAAGATAGTTGGGAGACGATGAAGACCG
CGGTGTCGAATTCGCTGGGAGAAAATAGCTTGAAATTTTCAGCTATTTGTGATGTCGCCTTATTTGAGGAAGCCTGGAGAAAATTAGGGAAAATGTCTGCAACTACTTCA
GGGGCAGAAAATGGAGTTGAATCAGTTTTGGTAGCTCAGATTAAGGGGAAGGGCAAGATGAAGTACAACGGGAAGCAGCAACATAGGAATAATAAGCTTAAGGAGGATCA
GGAAAATGAAGACACTCTAAATTATGTGTTAGCGGATGTGTTAGCTTGTATTGAAGAGAACAGATGGAAACTCATGAGAGGATCCGAGGTAGTGGTTGTTGGCTACAGAA
AAGCTTCAGTGTATGTGTTGAGGTTTAGTGTTGCCAGAGAATTAGAGAGACAGTTTCGAGCCCCAGTTGTCAGACGGATTAACGAGCTGATGAAGTCGCGTAGGCGAAAG
AGTGCATTGAGAAAGACTACAGTTGGTGCTAAGGTAGAGGGTGGTGTCTCTAGAGTGGCAACGAACTTGGGTGGGAGTGCCAAGTCATCAGTGAAAAAGCTTTCCTTTAA
GAGTCGTTGGGTGCGAGTGAAGAAGGAAGCGTCGGAGACCACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAGTAAAAGATCTTCTTACGTGCAAGAAGATACACAAGACTTTGGGGGAGAGACCAGGGGATATGACAGACAAAGCTTGGAATGAGATGGATGAGCAGACCATTGC
AAATATCAGAATGACATTATCAATGGGGGTATGCAGTCTCGTGGCGAAAGAGACGACTGCAAAAGAGTTGTTGAAGGCCTTGCAAGATAGTTGGGAGACGATGAAGACCG
CGGTGTCGAATTCGCTGGGAGAAAATAGCTTGAAATTTTCAGCTATTTGTGATGTCGCCTTATTTGAGGAAGCCTGGAGAAAATTAGGGAAAATGTCTGCAACTACTTCA
GGGGCAGAAAATGGAGTTGAATCAGTTTTGGTAGCTCAGATTAAGGGGAAGGGCAAGATGAAGTACAACGGGAAGCAGCAACATAGGAATAATAAGCTTAAGGAGGATCA
GGAAAATGAAGACACTCTAAATTATGTGTTAGCGGATGTGTTAGCTTGTATTGAAGAGAACAGATGGAAACTCATGAGAGGATCCGAGGTAGTGGTTGTTGGCTACAGAA
AAGCTTCAGTGTATGTGTTGAGGTTTAGTGTTGCCAGAGAATTAGAGAGACAGTTTCGAGCCCCAGTTGTCAGACGGATTAACGAGCTGATGAAGTCGCGTAGGCGAAAG
AGTGCATTGAGAAAGACTACAGTTGGTGCTAAGGTAGAGGGTGGTGTCTCTAGAGTGGCAACGAACTTGGGTGGGAGTGCCAAGTCATCAGTGAAAAAGCTTTCCTTTAA
GAGTCGTTGGGTGCGAGTGAAGAAGGAAGCGTCGGAGACCACTTAG
Protein sequenceShow/hide protein sequence
MQVKDLLTCKKIHKTLGERPGDMTDKAWNEMDEQTIANIRMTLSMGVCSLVAKETTAKELLKALQDSWETMKTAVSNSLGENSLKFSAICDVALFEEAWRKLGKMSATTS
GAENGVESVLVAQIKGKGKMKYNGKQQHRNNKLKEDQENEDTLNYVLADVLACIEENRWKLMRGSEVVVVGYRKASVYVLRFSVARELERQFRAPVVRRINELMKSRRRK
SALRKTTVGAKVEGGVSRVATNLGGSAKSSVKKLSFKSRWVRVKKEASETT