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Moc08g34320 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g34320
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr8:25088373..25089311
RNA-Seq ExpressionMoc08g34320
SyntenyMoc08g34320
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054657.1 uncharacterized protein E6C27_scaffold24G004750 [Cucumis melo var. makuwa]2.0e-2543.88Show/hide
Query:  LKGKEKENVTNGNVEETAGKEYAQRWGEAMEQPPVPLINKE---PHLETNRSSFKRKNKVQAVVSKRK----GKYQQGFVAYSPSTVPINSLTLQDDPQT
        L+  EK+NV      ET  KEYAQRW E   Q   PL +KE     + T R+ +  +      ++       G+  +    YSPS            P  
Subjt:  LKGKEKENVTNGNVEETAGKEYAQRWGEAMEQPPVPLINKE---PHLETNRSSFKRKNKVQAVVSKRK----GKYQQGFVAYSPSTVPINSLTLQDDPQT

Query:  LPDNHSSRRQLKRESFHSIPISYTELLSQLFQSHLLAPVPVEPLQPPYPKWYDPQVHCDYHAGAVGHSTENCTSLKHKVQVLMKAEWLKFSKEDGQ
             ++R   K+  F  IP+SYTELL QL +SH +A VP EPLQPPYPKWYDP V  +YHAGAVGHSTENC  LK KVQ L+KA WLKF K + +
Subjt:  LPDNHSSRRQLKRESFHSIPISYTELLSQLFQSHLLAPVPVEPLQPPYPKWYDPQVHCDYHAGAVGHSTENCTSLKHKVQVLMKAEWLKFSKEDGQ

KAA0067953.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa]5.9e-2540.54Show/hide
Query:  KEYAQRWGEAMEQPPVPLINKE---PHLETNRSSFKRK--NKVQAVVSKRKGKYQQGFVAY--SPSTVPINSLTL------------QDDPQTLPDNHSS
        KEYAQRW +   +   PL +KE     + T R+ F  +   K +++  +R  KY+Q F +Y  + S +P NS  L             + PQ       S
Subjt:  KEYAQRWGEAMEQPPVPLINKE---PHLETNRSSFKRK--NKVQAVVSKRKGKYQQGFVAY--SPSTVPINSLTL------------QDDPQTLPDNHSS

Query:  RRQLKRESFHSIPISYTELLSQLFQSHLLAPVPVEPLQPPYPKWYDPQVHCDYHAGAVGHSTENCTSLKHKVQVLMKAEWLKFSK
        +       F  IP++Y ELL QL Q+  LA +P+ P++PPYPKW+D    CDYHAG VGHSTENC +LK KVQ L+ A WL F K
Subjt:  RRQLKRESFHSIPISYTELLSQLFQSHLLAPVPVEPLQPPYPKWYDPQVHCDYHAGAVGHSTENCTSLKHKVQVLMKAEWLKFSK

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]3.5e-2561.11Show/hide
Query:  SSRRQLKRESFHSIPISYTELLSQLFQSHLLAPVPVEPLQPPYPKWYDPQVHCDYHAGAVGHSTENCTSLKHKVQVLMKAEWLKFSKEDG
        ++R   K+  F  IP++YTELL QLFQ++ LAPVPV+P+QPPYP+WYD    CDYHAGA+ HSTENCT LK++VQ L+KA W  F KE+G
Subjt:  SSRRQLKRESFHSIPISYTELLSQLFQSHLLAPVPVEPLQPPYPKWYDPQVHCDYHAGAVGHSTENCTSLKHKVQVLMKAEWLKFSKEDG

XP_022153553.1 uncharacterized protein LOC111021029 [Momordica charantia]2.5e-9275.98Show/hide
Query:  MEELNTELKKIRGEIQEQVMEVQNVELKKMRQDIDNIQEQVMEILNVLKNIVT-------ENLVEHHNNSPPRLDPPLCQPKESFPQHNSSHEAQLSKKG
        +EELN ELKKIR EIQEQVMEVQNVELKKMRQDIDNIQ+QVM+ILNVLKNIVT        NLVE +NNS PR+DPPLCQ KE FPQH+SSH+AQLSKKG
Subjt:  MEELNTELKKIRGEIQEQVMEVQNVELKKMRQDIDNIQEQVMEILNVLKNIVT-------ENLVEHHNNSPPRLDPPLCQPKESFPQHNSSHEAQLSKKG

Query:  QQAPTISQVEFTFQDGQASKVIHSNILKGKEKENVTNGNVEETAGKEYAQRWGEAMEQPPVPLINKEPHLETNRSSFKRKNKVQAVVSKRKGKYQQGFVA
        QQ PT  QVEFTF+D Q  KV +S+ LKG+EKENVT             QRWG+A+EQ PVPLINKEPH + N+SS KRKNKV AVVSKRK KYQQGFVA
Subjt:  QQAPTISQVEFTFQDGQASKVIHSNILKGKEKENVTNGNVEETAGKEYAQRWGEAMEQPPVPLINKEPHLETNRSSFKRKNKVQAVVSKRKGKYQQGFVA

Query:  YSPSTVPINSLTLQDDPQTLPDNHSSRRQLKRESFHSIPISYTELLSQLFQSHL
        YSPSTVPINS+TLQDDPQTLP+NHSSRRQLKRESFHSIP SYTELLSQLFQ +L
Subjt:  YSPSTVPINSLTLQDDPQTLPDNHSSRRQLKRESFHSIPISYTELLSQLFQSHL

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]6.3e-2761.29Show/hide
Query:  DNHSSRRQLKRESFHSIPISYTELLSQLFQSHLLAPVPVEPLQPPYPKWYDPQVHCDYHAGAVGHSTENCTSLKHKVQVLMKAEWLKFSKEDG
        +  ++R   K+  F  IP++YTELL QLFQ++ LAPVPV+P+QPPYP+WYD    CDYHAGA+GHSTENCT+LK++VQ L+KA WL F KE+G
Subjt:  DNHSSRRQLKRESFHSIPISYTELLSQLFQSHLLAPVPVEPLQPPYPKWYDPQVHCDYHAGAVGHSTENCTSLKHKVQVLMKAEWLKFSKEDG

TrEMBL top hitse value%identityAlignment
A0A5A7UJ84 Retrotrans_gag domain-containing protein9.8e-2643.88Show/hide
Query:  LKGKEKENVTNGNVEETAGKEYAQRWGEAMEQPPVPLINKE---PHLETNRSSFKRKNKVQAVVSKRK----GKYQQGFVAYSPSTVPINSLTLQDDPQT
        L+  EK+NV      ET  KEYAQRW E   Q   PL +KE     + T R+ +  +      ++       G+  +    YSPS            P  
Subjt:  LKGKEKENVTNGNVEETAGKEYAQRWGEAMEQPPVPLINKE---PHLETNRSSFKRKNKVQAVVSKRK----GKYQQGFVAYSPSTVPINSLTLQDDPQT

Query:  LPDNHSSRRQLKRESFHSIPISYTELLSQLFQSHLLAPVPVEPLQPPYPKWYDPQVHCDYHAGAVGHSTENCTSLKHKVQVLMKAEWLKFSKEDGQ
             ++R   K+  F  IP+SYTELL QL +SH +A VP EPLQPPYPKWYDP V  +YHAGAVGHSTENC  LK KVQ L+KA WLKF K + +
Subjt:  LPDNHSSRRQLKRESFHSIPISYTELLSQLFQSHLLAPVPVEPLQPPYPKWYDPQVHCDYHAGAVGHSTENCTSLKHKVQVLMKAEWLKFSKEDGQ

A0A5A7VIM6 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein2.9e-2540.54Show/hide
Query:  KEYAQRWGEAMEQPPVPLINKE---PHLETNRSSFKRK--NKVQAVVSKRKGKYQQGFVAY--SPSTVPINSLTL------------QDDPQTLPDNHSS
        KEYAQRW +   +   PL +KE     + T R+ F  +   K +++  +R  KY+Q F +Y  + S +P NS  L             + PQ       S
Subjt:  KEYAQRWGEAMEQPPVPLINKE---PHLETNRSSFKRK--NKVQAVVSKRKGKYQQGFVAY--SPSTVPINSLTL------------QDDPQTLPDNHSS

Query:  RRQLKRESFHSIPISYTELLSQLFQSHLLAPVPVEPLQPPYPKWYDPQVHCDYHAGAVGHSTENCTSLKHKVQVLMKAEWLKFSK
        +       F  IP++Y ELL QL Q+  LA +P+ P++PPYPKW+D    CDYHAG VGHSTENC +LK KVQ L+ A WL F K
Subjt:  RRQLKRESFHSIPISYTELLSQLFQSHLLAPVPVEPLQPPYPKWYDPQVHCDYHAGAVGHSTENCTSLKHKVQVLMKAEWLKFSK

A0A6J1D099 Ribonuclease H1.7e-2561.11Show/hide
Query:  SSRRQLKRESFHSIPISYTELLSQLFQSHLLAPVPVEPLQPPYPKWYDPQVHCDYHAGAVGHSTENCTSLKHKVQVLMKAEWLKFSKEDG
        ++R   K+  F  IP++YTELL QLFQ++ LAPVPV+P+QPPYP+WYD    CDYHAGA+ HSTENCT LK++VQ L+KA W  F KE+G
Subjt:  SSRRQLKRESFHSIPISYTELLSQLFQSHLLAPVPVEPLQPPYPKWYDPQVHCDYHAGAVGHSTENCTSLKHKVQVLMKAEWLKFSKEDG

A0A6J1DHS7 uncharacterized protein LOC1110210291.2e-9275.98Show/hide
Query:  MEELNTELKKIRGEIQEQVMEVQNVELKKMRQDIDNIQEQVMEILNVLKNIVT-------ENLVEHHNNSPPRLDPPLCQPKESFPQHNSSHEAQLSKKG
        +EELN ELKKIR EIQEQVMEVQNVELKKMRQDIDNIQ+QVM+ILNVLKNIVT        NLVE +NNS PR+DPPLCQ KE FPQH+SSH+AQLSKKG
Subjt:  MEELNTELKKIRGEIQEQVMEVQNVELKKMRQDIDNIQEQVMEILNVLKNIVT-------ENLVEHHNNSPPRLDPPLCQPKESFPQHNSSHEAQLSKKG

Query:  QQAPTISQVEFTFQDGQASKVIHSNILKGKEKENVTNGNVEETAGKEYAQRWGEAMEQPPVPLINKEPHLETNRSSFKRKNKVQAVVSKRKGKYQQGFVA
        QQ PT  QVEFTF+D Q  KV +S+ LKG+EKENVT             QRWG+A+EQ PVPLINKEPH + N+SS KRKNKV AVVSKRK KYQQGFVA
Subjt:  QQAPTISQVEFTFQDGQASKVIHSNILKGKEKENVTNGNVEETAGKEYAQRWGEAMEQPPVPLINKEPHLETNRSSFKRKNKVQAVVSKRKGKYQQGFVA

Query:  YSPSTVPINSLTLQDDPQTLPDNHSSRRQLKRESFHSIPISYTELLSQLFQSHL
        YSPSTVPINS+TLQDDPQTLP+NHSSRRQLKRESFHSIP SYTELLSQLFQ +L
Subjt:  YSPSTVPINSLTLQDDPQTLPDNHSSRRQLKRESFHSIPISYTELLSQLFQSHL

A0A6J1E2J7 Ribonuclease H3.1e-2761.29Show/hide
Query:  DNHSSRRQLKRESFHSIPISYTELLSQLFQSHLLAPVPVEPLQPPYPKWYDPQVHCDYHAGAVGHSTENCTSLKHKVQVLMKAEWLKFSKEDG
        +  ++R   K+  F  IP++YTELL QLFQ++ LAPVPV+P+QPPYP+WYD    CDYHAGA+GHSTENCT+LK++VQ L+KA WL F KE+G
Subjt:  DNHSSRRQLKRESFHSIPISYTELLSQLFQSHLLAPVPVEPLQPPYPKWYDPQVHCDYHAGAVGHSTENCTSLKHKVQVLMKAEWLKFSKEDG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAATTGAATACTGAGCTAAAGAAAATAAGAGGCGAGATTCAAGAACAGGTCATGGAGGTGCAGAATGTAGAGCTAAAGAAGATGAGACAAGACATCGATAATAT
TCAGGAGCAAGTCATGGAAATTTTAAATGTCTTAAAGAATATTGTTACTGAAAATTTAGTCGAACATCATAATAATTCACCACCTAGGTTGGACCCACCTCTTTGTCAAC
CAAAAGAGAGCTTCCCCCAGCATAATTCATCACATGAAGCTCAGCTTTCCAAGAAAGGCCAACAAGCTCCTACAATCTCTCAGGTTGAATTCACATTCCAAGATGGACAA
GCATCAAAGGTCATTCACTCAAATATTTTAAAAGGTAAAGAAAAAGAAAATGTTACCAATGGAAATGTTGAAGAGACTGCAGGGAAAGAATATGCTCAGAGATGGGGAGA
AGCAATGGAACAACCGCCAGTGCCTTTAATTAATAAAGAGCCACACCTTGAAACGAATAGAAGCTCTTTTAAAAGGAAAAATAAAGTTCAGGCAGTAGTTTCGAAGCGCA
AGGGGAAGTACCAACAAGGATTCGTGGCATACAGTCCTTCTACGGTACCCATAAATTCATTGACTCTGCAGGATGATCCACAAACATTACCTGACAATCATAGTAGTCGG
AGACAACTAAAGCGAGAGAGCTTTCATTCGATCCCAATATCCTATACCGAGTTGTTATCCCAATTATTTCAGAGTCATCTACTAGCTCCGGTACCTGTAGAACCATTGCA
GCCACCTTATCCAAAGTGGTATGACCCGCAAGTCCACTGTGATTACCACGCAGGAGCTGTAGGTCATTCGACAGAGAACTGTACTTCACTAAAACATAAAGTGCAAGTTC
TAATGAAGGCAGAATGGCTAAAGTTTTCAAAGGAAGATGGTCAACACATGAAGCACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAATTGAATACTGAGCTAAAGAAAATAAGAGGCGAGATTCAAGAACAGGTCATGGAGGTGCAGAATGTAGAGCTAAAGAAGATGAGACAAGACATCGATAATAT
TCAGGAGCAAGTCATGGAAATTTTAAATGTCTTAAAGAATATTGTTACTGAAAATTTAGTCGAACATCATAATAATTCACCACCTAGGTTGGACCCACCTCTTTGTCAAC
CAAAAGAGAGCTTCCCCCAGCATAATTCATCACATGAAGCTCAGCTTTCCAAGAAAGGCCAACAAGCTCCTACAATCTCTCAGGTTGAATTCACATTCCAAGATGGACAA
GCATCAAAGGTCATTCACTCAAATATTTTAAAAGGTAAAGAAAAAGAAAATGTTACCAATGGAAATGTTGAAGAGACTGCAGGGAAAGAATATGCTCAGAGATGGGGAGA
AGCAATGGAACAACCGCCAGTGCCTTTAATTAATAAAGAGCCACACCTTGAAACGAATAGAAGCTCTTTTAAAAGGAAAAATAAAGTTCAGGCAGTAGTTTCGAAGCGCA
AGGGGAAGTACCAACAAGGATTCGTGGCATACAGTCCTTCTACGGTACCCATAAATTCATTGACTCTGCAGGATGATCCACAAACATTACCTGACAATCATAGTAGTCGG
AGACAACTAAAGCGAGAGAGCTTTCATTCGATCCCAATATCCTATACCGAGTTGTTATCCCAATTATTTCAGAGTCATCTACTAGCTCCGGTACCTGTAGAACCATTGCA
GCCACCTTATCCAAAGTGGTATGACCCGCAAGTCCACTGTGATTACCACGCAGGAGCTGTAGGTCATTCGACAGAGAACTGTACTTCACTAAAACATAAAGTGCAAGTTC
TAATGAAGGCAGAATGGCTAAAGTTTTCAAAGGAAGATGGTCAACACATGAAGCACTAG
Protein sequenceShow/hide protein sequence
MEELNTELKKIRGEIQEQVMEVQNVELKKMRQDIDNIQEQVMEILNVLKNIVTENLVEHHNNSPPRLDPPLCQPKESFPQHNSSHEAQLSKKGQQAPTISQVEFTFQDGQ
ASKVIHSNILKGKEKENVTNGNVEETAGKEYAQRWGEAMEQPPVPLINKEPHLETNRSSFKRKNKVQAVVSKRKGKYQQGFVAYSPSTVPINSLTLQDDPQTLPDNHSSR
RQLKRESFHSIPISYTELLSQLFQSHLLAPVPVEPLQPPYPKWYDPQVHCDYHAGAVGHSTENCTSLKHKVQVLMKAEWLKFSKEDGQHMKH