; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc08g34830 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g34830
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr8:25440162..25443695
RNA-Seq ExpressionMoc08g34830
SyntenyMoc08g34830
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056121.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]7.6e-13148.12Show/hide
Query:  PDIVSVMMTDANTMNEKMAEMEKKLAALMKTVEERDYEIVYLKNQIESRDVAESSQTPTLKINDKGKTIAQENQSQYSTSIASLSVQQLQDMITNTIRAQ
        P+I+SVM+T+ +T   +MAE+EKK+  LMK VEERDYEI +LKN IESRD AESS   T+K  DKGK + QE+Q Q STSIASLSVQQLQ+MI ++I+ Q
Subjt:  PDIVSVMMTDANTMNEKMAEMEKKLAALMKTVEERDYEIVYLKNQIESRDVAESSQTPTLKINDKGKTIAQENQSQYSTSIASLSVQQLQDMITNTIRAQ

Query:  YDGSSQSSLLYSKPYTKRINDLRIPPGYQPPKFQHFDGKGNPKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNR
        Y G +Q+  LY KPYTKRI++LR+P GYQPPKFQ FDGKGNPKQH+AHF++TCE AGTRG+ LVKQFVRTLKGNA DWY DLEPE+I++WEQLER+FLNR
Subjt:  YDGSSQSSLLYSKPYTKRINDLRIPPGYQPPKFQHFDGKGNPKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNR

Query:  FYNTKRTVSMMELTNSKQRKGERLLNIST--DALRLDCKDRLTELSVVELCTQGMHWELLYILQGIKPCTFEELATRARDMELSIANRGSKDSLVL----
        FY+T+  VSMMELTN++Q+KGE +++      AL LDCKDRLTELS VE+CTQGMHW LLYILQGIKP TFEELATRA DMELSIANRG+KD L+     
Subjt:  FYNTKRTVSMMELTNSKQRKGERLLNIST--DALRLDCKDRLTELSVVELCTQGMHWELLYILQGIKPCTFEELATRARDMELSIANRGSKDSLVL----

Query:  ------DLEKESKSVEKTSNEFFG--VNTISPRKDSR---------KPKSERKENKDSFRP---------------------------------------
              D +K + SV K S       + + S RK+++         K +S  KE ++   P                                       
Subjt:  ------DLEKESKSVEKTSNEFFG--VNTISPRKDSR---------KPKSERKENKDSFRP---------------------------------------

Query:  ------------------------------------------------------------QISATLKEF--------SPKKLFYLASSHYINVEEID---
                                                                    + S TL EF         P+++  + + H  ++ E+D   
Subjt:  ------------------------------------------------------------QISATLKEF--------SPKKLFYLASSHYINVEEID---

Query:  -------NSKITEQMTSVFDRIKPSATRLSVFQRMSMTTAKEESQCVTYIPTRSSVFQRLSISTLKKNQSLKSVFDRLEVSNDQYERMMKTVEAKSSDEV
               NS    Q TSVFDRIKPS TR SVFQR+S+ T +EE+QC T+I TR+S  +RLSISTLKK++   S FDRL+++NDQ +R MK+ +AK   E 
Subjt:  -------NSKITEQMTSVFDRIKPSATRLSVFQRMSMTTAKEESQCVTYIPTRSSVFQRLSISTLKKNQSLKSVFDRLEVSNDQYERMMKTVEAKSSDEV

Query:  NDEKKIHSIVPSR
        ND+ KIHS VPSR
Subjt:  NDEKKIHSIVPSR

TYK03695.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.3e-12640.71Show/hide
Query:  TYGCSDEFQLREHQTPPVVANKVMMPQETSLEDKFLVNHNPLFDH-------------SPDIVSVMMTDANTMNEKMAEMEKKLAALMKTVEERDYEIVY
        T+ CS E Q  E   P  VA  +        +   ++  NP  D               P+I+SVM+T+ +T   +MAE+EKK+  LMK VEERDYEI +
Subjt:  TYGCSDEFQLREHQTPPVVANKVMMPQETSLEDKFLVNHNPLFDH-------------SPDIVSVMMTDANTMNEKMAEMEKKLAALMKTVEERDYEIVY

Query:  LKNQIESRDVAESSQTPTLKINDKGKTIAQENQSQYSTSIASLSVQQLQDMITNTIRAQYDGSSQSSLLYSKPYTKRINDLRIPPGYQPPKFQHFDGKGN
        LKN IESRD AESS   T+K  DKGK + QE+Q Q STSIASLSVQQLQ+MI ++I+ QY G +Q+  LYSKPYTKRI++LR+P GYQPPKFQ FDGKGN
Subjt:  LKNQIESRDVAESSQTPTLKINDKGKTIAQENQSQYSTSIASLSVQQLQDMITNTIRAQYDGSSQSSLLYSKPYTKRINDLRIPPGYQPPKFQHFDGKGN

Query:  PKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRFYNTKRTVSMMELTNSKQRKGERLLNIST--DALRLDCKDR
        PKQH+AHF+ETCE AGTRG+ LVKQFVRTLKGNAFD Y DLEPE+I++WEQLER+FLNRFY+T+R VSMMELTN++Q+KGE +++      AL LDCKDR
Subjt:  PKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRFYNTKRTVSMMELTNSKQRKGERLLNIST--DALRLDCKDR

Query:  LTELSVVELCTQGMHWELLYILQGIKPCTFEELATRARDMELSIANRGSKD-------------------------------------------------
        LTELS VE+CTQGMHW LLYILQGIKP TFEELATRA DMELSI NRG+KD                                                 
Subjt:  LTELSVVELCTQGMHWELLYILQGIKPCTFEELATRARDMELSIANRGSKD-------------------------------------------------

Query:  ----------------------------------------------------------------------------SLVLDLEKESK-------------
                                                                                     L+L L +E K             
Subjt:  ----------------------------------------------------------------------------SLVLDLEKESK-------------

Query:  -SVEKTSN-------------------------------------------------------------------EFFGVNTISPRKDSRK------PKS
         ++E TSN                                                                   + +   +IS +K  R+      PK 
Subjt:  -SVEKTSN-------------------------------------------------------------------EFFGVNTISPRKDSRK------PKS

Query:  ERKENKDSFRPQISATLKEFSPKKLF-------------YLAS-----SHYINVEEIDNSKITEQMTSVFDRIKPSATRLSVFQRMSMTTAKEESQCVTY
         + +++D  + + S TL EF P+                + AS     ++Y + +E++N     Q TSVFDRIKPS TR SVFQR+SM T +EE+QC T+
Subjt:  ERKENKDSFRPQISATLKEFSPKKLF-------------YLAS-----SHYINVEEIDNSKITEQMTSVFDRIKPSATRLSVFQRMSMTTAKEESQCVTY

Query:  IPTRSSVFQRLSISTLKKNQSLKSVFDRLEVSNDQYERMMKTVEAKSSDEVNDEKKIHSIVPSR
        I TR+S F+RLSIS  KKN+   S FDRL+++NDQ +R MK+++AK   E ND+ KIHS VPSR
Subjt:  IPTRSSVFQRLSISTLKKNQSLKSVFDRLEVSNDQYERMMKTVEAKSSDEVNDEKKIHSIVPSR

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]3.8e-12259.39Show/hide
Query:  SNLHTGHITYGCSDEFQLREHQTPPVVANKVMMPQETSLEDKFLVNHNPLF------------DHSPDIVSVMMTDANTMNEKMAEMEKKLAALMKTVEE
        S+ +TG IT   S    ++       +A  ++     S +   ++  NPL+            +  PD++SVMM D   +   MAEME+K+  LMK V+E
Subjt:  SNLHTGHITYGCSDEFQLREHQTPPVVANKVMMPQETSLEDKFLVNHNPLF------------DHSPDIVSVMMTDANTMNEKMAEMEKKLAALMKTVEE

Query:  RDYEIVYLKNQIESRDVAESSQTPTLKINDKGKTIAQENQ-SQYSTSIASLSVQQLQDMITNTIRAQYDGSSQSSLLYSKPYTKRINDLRIPPGYQPPKF
        RD+EI  LK Q+++R+ AESSQTP +K++DKGK + QENQ  Q STS+ASLSVQQLQDMITN+IRAQY G SQ+S +YSKPYTKRI++LR+P GYQPPKF
Subjt:  RDYEIVYLKNQIESRDVAESSQTPTLKINDKGKTIAQENQ-SQYSTSIASLSVQQLQDMITNTIRAQYDGSSQSSLLYSKPYTKRINDLRIPPGYQPPKF

Query:  QHFDGKGNPKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRFYNTKRTVSMMELTNSKQRKGERLLNIST--DA
        Q FDGKGNPKQH+AHFVETCENAG+RG+QLV+QFVR+LKGNAF+WYTDLEPE+IESWEQLE+EFLNRFY+T+RTVSMMELTN+KQRKGE +++      A
Subjt:  QHFDGKGNPKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRFYNTKRTVSMMELTNSKQRKGERLLNIST--DA

Query:  LRLDCKDRLTELSVVELCTQGMHWELLYILQGIKPCTFEELATRARDMELSIANRGSKDSLVLDLEKESKS-------VEKTSNEFFGVNTISPRKDSRK
        L LDCKDRLTELS VE+CTQGMHW LLYILQGIKP TFEELATRA DMELSIA+RG+KD LV +++K+ K        V+ TS E   VNT +P K S K
Subjt:  LRLDCKDRLTELSVVELCTQGMHWELLYILQGIKPCTFEELATRARDMELSIANRGSKDSLVLDLEKESKS-------VEKTSNEFFGVNTISPRKDSRK

Query:  PKSERKENKDSFRPQISATLKEFSPK
         K  R E KD    +   TLKE   K
Subjt:  PKSERKENKDSFRPQISATLKEFSPK

XP_031740568.1 uncharacterized protein LOC116403508 [Cucumis sativus]1.4e-12159.15Show/hide
Query:  SNLHTGHITYGCSDEFQLREHQTPPVVANKVMMPQETSLEDKFLVNHNPLF------------DHSPDIVSVMMTDANTMNEKMAEMEKKLAALMKTVEE
        S+ +TG IT   S    ++       +A  ++     S +   ++  NPL+            +  PD++SVMM D   +   MAEME+K+  LMK V+E
Subjt:  SNLHTGHITYGCSDEFQLREHQTPPVVANKVMMPQETSLEDKFLVNHNPLF------------DHSPDIVSVMMTDANTMNEKMAEMEKKLAALMKTVEE

Query:  RDYEIVYLKNQIESRDVAESSQTPTLKINDKGKTIAQENQ-SQYSTSIASLSVQQLQDMITNTIRAQYDGSSQSSLLYSKPYTKRINDLRIPPGYQPPKF
        RD+EI  LK Q+++R+ AESSQTP +K++DKGK + QENQ  Q STS+ASLSVQQLQDMIT++IRAQY G SQ+S +YSKPYTKRI++LR+P GYQPPKF
Subjt:  RDYEIVYLKNQIESRDVAESSQTPTLKINDKGKTIAQENQ-SQYSTSIASLSVQQLQDMITNTIRAQYDGSSQSSLLYSKPYTKRINDLRIPPGYQPPKF

Query:  QHFDGKGNPKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRFYNTKRTVSMMELTNSKQRKGERLLNIST--DA
        Q FDGKGNPKQH+AHFVETCENAG+RG+QLV+QFVR+LKGNAF+WYTDLEPE+IESWEQLE+EFLNRFY+T+RTVSMMELTN+KQRKGE +++      A
Subjt:  QHFDGKGNPKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRFYNTKRTVSMMELTNSKQRKGERLLNIST--DA

Query:  LRLDCKDRLTELSVVELCTQGMHWELLYILQGIKPCTFEELATRARDMELSIANRGSKDSLVLDLEKESKS-------VEKTSNEFFGVNTISPRKDSRK
        L LDCKDRLTELS VE+CTQGMHW LLYILQGIKP TFEELATRA DMELSIA+RG+KD LV +++K+ K        V+ TS E   VNT +P K S K
Subjt:  LRLDCKDRLTELSVVELCTQGMHWELLYILQGIKPCTFEELATRARDMELSIANRGSKDSLVLDLEKESKS-------VEKTSNEFFGVNTISPRKDSRK

Query:  PKSERKENKDSFRPQISATLKEFSPK
         K  R E KD    +   TLKE   K
Subjt:  PKSERKENKDSFRPQISATLKEFSPK

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]3.8e-12259.39Show/hide
Query:  SNLHTGHITYGCSDEFQLREHQTPPVVANKVMMPQETSLEDKFLVNHNPLF------------DHSPDIVSVMMTDANTMNEKMAEMEKKLAALMKTVEE
        S+ +TG IT   S    ++       +A  ++     S +   ++  NPL+            +  PD++SVMM D   +   MAEME+K+  LMK V+E
Subjt:  SNLHTGHITYGCSDEFQLREHQTPPVVANKVMMPQETSLEDKFLVNHNPLF------------DHSPDIVSVMMTDANTMNEKMAEMEKKLAALMKTVEE

Query:  RDYEIVYLKNQIESRDVAESSQTPTLKINDKGKTIAQENQ-SQYSTSIASLSVQQLQDMITNTIRAQYDGSSQSSLLYSKPYTKRINDLRIPPGYQPPKF
        RD+EI  LK Q+++R+ AESSQTP +K++DKGK + QENQ  Q STS+ASLSVQQLQDMITN+IRAQY G SQ+S +YSKPYTKRI++LR+P GYQPPKF
Subjt:  RDYEIVYLKNQIESRDVAESSQTPTLKINDKGKTIAQENQ-SQYSTSIASLSVQQLQDMITNTIRAQYDGSSQSSLLYSKPYTKRINDLRIPPGYQPPKF

Query:  QHFDGKGNPKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRFYNTKRTVSMMELTNSKQRKGERLLNIST--DA
        Q FDGKGNPKQH+AHFVETCENAG+RG+QLV+QFVR+LKGNAF+WYTDLEPE+IESWEQLE+EFLNRFY+T+RTVSMMELTN+KQRKGE +++      A
Subjt:  QHFDGKGNPKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRFYNTKRTVSMMELTNSKQRKGERLLNIST--DA

Query:  LRLDCKDRLTELSVVELCTQGMHWELLYILQGIKPCTFEELATRARDMELSIANRGSKDSLVLDLEKESKS-------VEKTSNEFFGVNTISPRKDSRK
        L LDCKDRLTELS VE+CTQGMHW LLYILQGIKP TFEELATRA DMELSIA+RG+KD LV +++K+ K        V+ TS E   VNT +P K S K
Subjt:  LRLDCKDRLTELSVVELCTQGMHWELLYILQGIKPCTFEELATRARDMELSIANRGSKDSLVLDLEKESKS-------VEKTSNEFFGVNTISPRKDSRK

Query:  PKSERKENKDSFRPQISATLKEFSPK
         K  R E KD    +   TLKE   K
Subjt:  PKSERKENKDSFRPQISATLKEFSPK

TrEMBL top hitse value%identityAlignment
A0A5A7TZU9 Ribonuclease H3.5e-11858.45Show/hide
Query:  SDEFQLREHQTPPVVANKVMMPQETSLEDKFLVNHNPLFDH-------------SPDIVSVMMTDANTMNEKMAEMEKKLAALMKTVEERDYEIVYLKNQ
        S E Q  E   P  VA  +        +   ++  NP  D               P+I+SVM+TD +T  ++MAE+EKK+  LMK VEERD+EI  LKN 
Subjt:  SDEFQLREHQTPPVVANKVMMPQETSLEDKFLVNHNPLFDH-------------SPDIVSVMMTDANTMNEKMAEMEKKLAALMKTVEERDYEIVYLKNQ

Query:  IESRDVAESSQTPTLKINDKGKTIAQENQSQYSTSIASLSVQQLQDMITNTIRAQYDGSSQSSLLYSKPYTKRINDLRIPPGYQPPKFQHFDGKGNPKQH
        IESRD AESS T T+K  +KGK I QE+Q Q STSIASLSVQQLQ+MI N+I+ QY G +Q+  LYSKPYTKRI+++R+P GYQPPKFQ FDGKGNPKQH
Subjt:  IESRDVAESSQTPTLKINDKGKTIAQENQSQYSTSIASLSVQQLQDMITNTIRAQYDGSSQSSLLYSKPYTKRINDLRIPPGYQPPKFQHFDGKGNPKQH

Query:  IAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRFYNTKRTVSMMELTNSKQRKGERLLNIST--DALRLDCKDRLTEL
        +AHF+ETCE AGTRG+ LVKQFVRTLKGNAFDWYTDLEPE+I+SWEQLER+FLNRFY+T+R VSM+ELT +KQRKGE +++      AL LDCKDRLTEL
Subjt:  IAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRFYNTKRTVSMMELTNSKQRKGERLLNIST--DALRLDCKDRLTEL

Query:  SVVELCTQGMHWELLYILQGIKPCTFEELATRARDMELSIANRGSKDSLVLDLEKESKSVEKTSNEFFG-------VNTISPRKDSRKPKSERKENKDSF
        S VE+CTQGMHW LLYILQGIKP TFEELATRA DMELSIANRG+ D LV ++ KE K V+ T     G       V+T   +  S++ K E+++++   
Subjt:  SVVELCTQGMHWELLYILQGIKPCTFEELATRARDMELSIANRGSKDSLVLDLEKESKSVEKTSNEFFG-------VNTISPRKDSRKPKSERKENKDSF

Query:  RPQISATLKEFSPK
        R     TLKE   K
Subjt:  RPQISATLKEFSPK

A0A5A7TZU9 Ribonuclease H8.2e-0640Show/hide
Query:  LASSHYINVEEIDNS----KITEQMTSVFDRIKPSATRLSVFQRMSMTTAKEESQCVTYIPTRSSVFQRLSISTLKKNQSL-------KSVFDRLEVSND
        +A++ +I VEE  +S    K+  Q +SVFDRI  SA R SVFQR+S + AK+ +Q  T   TR S FQRL+ S  KK +S+       KS F RL VS  
Subjt:  LASSHYINVEEIDNS----KITEQMTSVFDRIKPSATRLSVFQRMSMTTAKEESQCVTYIPTRSSVFQRLSISTLKKNQSL-------KSVFDRLEVSND

Query:  QYERMMKTVEAKSSDEVNDEKKIHSIVPSR
        + ++      +  S  V  +++I S  PSR
Subjt:  QYERMMKTVEAKSSDEVNDEKKIHSIVPSR

A0A5A7TZU9 Ribonuclease H6.3e-11566.47Show/hide
Query:  LVNHNPLFDH------------SPDIVSVMMTDANTMNEKMAEMEKKLAALMKTVEERDYEIVYLKNQIESRDVAESSQTPTLKINDKGKTIAQENQ-SQ
        ++  NPL+D+            +PD++SVMM D  T    MAEME+K+  LMK  EERD+EI  L+ Q+ +R+  ESSQTP +K  DKGK + QENQ  Q
Subjt:  LVNHNPLFDH------------SPDIVSVMMTDANTMNEKMAEMEKKLAALMKTVEERDYEIVYLKNQIESRDVAESSQTPTLKINDKGKTIAQENQ-SQ

Query:  YSTSIASLSVQQLQDMITNTIRAQYDGSSQSSLLYSKPYTKRINDLRIPPGYQPPKFQHFDGKGNPKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAF
         S S+ASLSVQQLQDMI N IRAQY G  Q++ +YSKPYTKRI+ LR+P GYQPPKFQ FDGKGNPKQHIAHFVETCENAG+RG+QLV+QFVR+LKGN F
Subjt:  YSTSIASLSVQQLQDMITNTIRAQYDGSSQSSLLYSKPYTKRINDLRIPPGYQPPKFQHFDGKGNPKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAF

Query:  DWYTDLEPETIESWEQLEREFLNRFYNTKRTVSMMELTNSKQRKGERLLNIST--DALRLDCKDRLTELSVVELCTQGMHWELLYILQGIKPCTFEELAT
        +WYTDLEPE I+SWEQLE+EFLNRFY+ +RTVSMMELTN+KQRKGE +++      AL LDCKDRLTELS VE+CTQGMHW LLYILQGIKPCTFEELAT
Subjt:  DWYTDLEPETIESWEQLEREFLNRFYNTKRTVSMMELTNSKQRKGERLLNIST--DALRLDCKDRLTELSVVELCTQGMHWELLYILQGIKPCTFEELAT

Query:  RARDMELSIANRGSKDSLVLDL---EKESKSVEK
        RA DMELSIA+RG+KD  V ++   +KE+KS EK
Subjt:  RARDMELSIANRGSKDSLVLDL---EKESKSVEK

A0A5A7URH1 Ty3-gypsy retrotransposon protein3.7e-13148.12Show/hide
Query:  PDIVSVMMTDANTMNEKMAEMEKKLAALMKTVEERDYEIVYLKNQIESRDVAESSQTPTLKINDKGKTIAQENQSQYSTSIASLSVQQLQDMITNTIRAQ
        P+I+SVM+T+ +T   +MAE+EKK+  LMK VEERDYEI +LKN IESRD AESS   T+K  DKGK + QE+Q Q STSIASLSVQQLQ+MI ++I+ Q
Subjt:  PDIVSVMMTDANTMNEKMAEMEKKLAALMKTVEERDYEIVYLKNQIESRDVAESSQTPTLKINDKGKTIAQENQSQYSTSIASLSVQQLQDMITNTIRAQ

Query:  YDGSSQSSLLYSKPYTKRINDLRIPPGYQPPKFQHFDGKGNPKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNR
        Y G +Q+  LY KPYTKRI++LR+P GYQPPKFQ FDGKGNPKQH+AHF++TCE AGTRG+ LVKQFVRTLKGNA DWY DLEPE+I++WEQLER+FLNR
Subjt:  YDGSSQSSLLYSKPYTKRINDLRIPPGYQPPKFQHFDGKGNPKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNR

Query:  FYNTKRTVSMMELTNSKQRKGERLLNIST--DALRLDCKDRLTELSVVELCTQGMHWELLYILQGIKPCTFEELATRARDMELSIANRGSKDSLVL----
        FY+T+  VSMMELTN++Q+KGE +++      AL LDCKDRLTELS VE+CTQGMHW LLYILQGIKP TFEELATRA DMELSIANRG+KD L+     
Subjt:  FYNTKRTVSMMELTNSKQRKGERLLNIST--DALRLDCKDRLTELSVVELCTQGMHWELLYILQGIKPCTFEELATRARDMELSIANRGSKDSLVL----

Query:  ------DLEKESKSVEKTSNEFFG--VNTISPRKDSR---------KPKSERKENKDSFRP---------------------------------------
              D +K + SV K S       + + S RK+++         K +S  KE ++   P                                       
Subjt:  ------DLEKESKSVEKTSNEFFG--VNTISPRKDSR---------KPKSERKENKDSFRP---------------------------------------

Query:  ------------------------------------------------------------QISATLKEF--------SPKKLFYLASSHYINVEEID---
                                                                    + S TL EF         P+++  + + H  ++ E+D   
Subjt:  ------------------------------------------------------------QISATLKEF--------SPKKLFYLASSHYINVEEID---

Query:  -------NSKITEQMTSVFDRIKPSATRLSVFQRMSMTTAKEESQCVTYIPTRSSVFQRLSISTLKKNQSLKSVFDRLEVSNDQYERMMKTVEAKSSDEV
               NS    Q TSVFDRIKPS TR SVFQR+S+ T +EE+QC T+I TR+S  +RLSISTLKK++   S FDRL+++NDQ +R MK+ +AK   E 
Subjt:  -------NSKITEQMTSVFDRIKPSATRLSVFQRMSMTTAKEESQCVTYIPTRSSVFQRLSISTLKKNQSLKSVFDRLEVSNDQYERMMKTVEAKSSDEV

Query:  NDEKKIHSIVPSR
        ND+ KIHS VPSR
Subjt:  NDEKKIHSIVPSR

A0A5A7UUI7 Ty3-gypsy retrotransposon protein1.1e-11457.63Show/hide
Query:  SDEFQLREHQTPPVVA----NKVMMPQETSL---EDKFLVNHNPLFDHS------PDIVSVMMTDANTMNEKMAEMEKKLAALMKTVEERDYEIVYLKNQ
        S E Q  E   P  VA     ++  P +  +   E+  +  HN L + S      P+I+SVM+T+ +T   +MAE+EKK+  LMK VEERDYEI +LKN 
Subjt:  SDEFQLREHQTPPVVA----NKVMMPQETSL---EDKFLVNHNPLFDHS------PDIVSVMMTDANTMNEKMAEMEKKLAALMKTVEERDYEIVYLKNQ

Query:  IESRDVAESSQTPTLKINDKGKTIAQENQSQYSTSIASLSVQQLQDMITNTIRAQYDGSSQSSLLYSKPYTKRINDLRIPPGYQPPKFQHFDGKGNPKQH
        IESRD AESS   T+K  DKGK + QE+Q Q STSIASLSVQQLQ+MI ++I+ QY G +Q+  LYSKPYTKRI++LR+P GYQPPKFQ FDGKGNPKQH
Subjt:  IESRDVAESSQTPTLKINDKGKTIAQENQSQYSTSIASLSVQQLQDMITNTIRAQYDGSSQSSLLYSKPYTKRINDLRIPPGYQPPKFQHFDGKGNPKQH

Query:  IAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRFYNTKRTVSMMELTNSKQRKGERLLNIST--DALRLDCKDRLTEL
        +AHF+ETCE AGTRG+ LVKQFVRTLKGNAFDWY DLEPE+I++WEQLER+FLNRFY+T+R VSMMELTN++Q+KGE +++      AL LDCKDRLTEL
Subjt:  IAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRFYNTKRTVSMMELTNSKQRKGERLLNIST--DALRLDCKDRLTEL

Query:  SVVELCTQGMHWELLYILQGIKPCTFEELATRARDMELSIANRGSKDSLVLDLEKESKSVE---KTSNEFFGVNTI---SPRKDSRKPKSERKENKDSFR
        S VE+CTQGMHW LLYILQGIKP TFEELATRA DMELSIANRG+KD L+     +   ++   K +N     + +   +P K   K K  + E K    
Subjt:  SVVELCTQGMHWELLYILQGIKPCTFEELATRARDMELSIANRGSKDSLVLDLEKESKSVE---KTSNEFFGVNTI---SPRKDSRKPKSERKENKDSFR

Query:  PQISATLKEFSPK
         +  +TLKE   K
Subjt:  PQISATLKEFSPK

A0A5D3BX77 Retrotransposon gag protein2.1e-12640.71Show/hide
Query:  TYGCSDEFQLREHQTPPVVANKVMMPQETSLEDKFLVNHNPLFDH-------------SPDIVSVMMTDANTMNEKMAEMEKKLAALMKTVEERDYEIVY
        T+ CS E Q  E   P  VA  +        +   ++  NP  D               P+I+SVM+T+ +T   +MAE+EKK+  LMK VEERDYEI +
Subjt:  TYGCSDEFQLREHQTPPVVANKVMMPQETSLEDKFLVNHNPLFDH-------------SPDIVSVMMTDANTMNEKMAEMEKKLAALMKTVEERDYEIVY

Query:  LKNQIESRDVAESSQTPTLKINDKGKTIAQENQSQYSTSIASLSVQQLQDMITNTIRAQYDGSSQSSLLYSKPYTKRINDLRIPPGYQPPKFQHFDGKGN
        LKN IESRD AESS   T+K  DKGK + QE+Q Q STSIASLSVQQLQ+MI ++I+ QY G +Q+  LYSKPYTKRI++LR+P GYQPPKFQ FDGKGN
Subjt:  LKNQIESRDVAESSQTPTLKINDKGKTIAQENQSQYSTSIASLSVQQLQDMITNTIRAQYDGSSQSSLLYSKPYTKRINDLRIPPGYQPPKFQHFDGKGN

Query:  PKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRFYNTKRTVSMMELTNSKQRKGERLLNIST--DALRLDCKDR
        PKQH+AHF+ETCE AGTRG+ LVKQFVRTLKGNAFD Y DLEPE+I++WEQLER+FLNRFY+T+R VSMMELTN++Q+KGE +++      AL LDCKDR
Subjt:  PKQHIAHFVETCENAGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRFYNTKRTVSMMELTNSKQRKGERLLNIST--DALRLDCKDR

Query:  LTELSVVELCTQGMHWELLYILQGIKPCTFEELATRARDMELSIANRGSKD-------------------------------------------------
        LTELS VE+CTQGMHW LLYILQGIKP TFEELATRA DMELSI NRG+KD                                                 
Subjt:  LTELSVVELCTQGMHWELLYILQGIKPCTFEELATRARDMELSIANRGSKD-------------------------------------------------

Query:  ----------------------------------------------------------------------------SLVLDLEKESK-------------
                                                                                     L+L L +E K             
Subjt:  ----------------------------------------------------------------------------SLVLDLEKESK-------------

Query:  -SVEKTSN-------------------------------------------------------------------EFFGVNTISPRKDSRK------PKS
         ++E TSN                                                                   + +   +IS +K  R+      PK 
Subjt:  -SVEKTSN-------------------------------------------------------------------EFFGVNTISPRKDSRK------PKS

Query:  ERKENKDSFRPQISATLKEFSPKKLF-------------YLAS-----SHYINVEEIDNSKITEQMTSVFDRIKPSATRLSVFQRMSMTTAKEESQCVTY
         + +++D  + + S TL EF P+                + AS     ++Y + +E++N     Q TSVFDRIKPS TR SVFQR+SM T +EE+QC T+
Subjt:  ERKENKDSFRPQISATLKEFSPKKLF-------------YLAS-----SHYINVEEIDNSKITEQMTSVFDRIKPSATRLSVFQRMSMTTAKEESQCVTY

Query:  IPTRSSVFQRLSISTLKKNQSLKSVFDRLEVSNDQYERMMKTVEAKSSDEVNDEKKIHSIVPSR
        I TR+S F+RLSIS  KKN+   S FDRL+++NDQ +R MK+++AK   E ND+ KIHS VPSR
Subjt:  IPTRSSVFQRLSISTLKKNQSLKSVFDRLEVSNDQYERMMKTVEAKSSDEVNDEKKIHSIVPSR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAACCTTCATACGGGTCATATCACATATGGTTGCTCTGATGAATTCCAACTACGGGAACATCAAACTCCTCCTGTTGTTGCAAACAAAGTAATGATGCCA
CAAGAAACATCTTTGGAAGATAAATTTCTTGTTAATCATAACCCCTTATTTGATCATAGTCCTGACATTGTCTCTGTTATGATGACTGATGCAAATACTATGAAT
GAAAAAATGGCTGAAATGGAAAAGAAGCTCGCTGCATTGATGAAGACAGTGGAAGAAAGAGATTATGAAATCGTTTACCTGAAGAATCAGATTGAAAGCAGAGAT
GTTGCTGAGTCGAGTCAAACCCCTACTCTCAAGATAAATGACAAGGGAAAGACTATCGCTCAAGAAAATCAATCGCAATATTCCACTTCGATCGCTTCACTGTCT
GTTCAGCAACTCCAAGATATGATCACGAACACAATCAGAGCGCAATACGACGGATCTTCTCAAAGTTCCCTCTTGTATTCTAAGCCATATACTAAGAGAATTAAT
GATCTGAGAATACCTCCTGGATACCAACCTCCAAAATTCCAACATTTCGATGGGAAGGGCAATCCCAAACAACATATTGCTCACTTTGTCGAAACTTGTGAGAAT
GCTGGTACAAGAGGCAATCAATTGGTCAAGCAGTTCGTCCGAACATTAAAGGGAAACGCCTTTGACTGGTATACTGATCTCGAGCCTGAAACGATCGAGAGTTGG
GAACAGCTTGAAAGAGAATTCCTAAATCGCTTTTACAATACGAAGAGAACTGTCAGCATGATGGAGCTCACGAACTCCAAACAAAGAAAAGGCGAACGGTTGTTG
AATATATCAACCGATGCTCTAAGGCTTGATTGCAAAGATAGACTTACTGAACTATCCGTTGTCGAATTATGCACTCAAGGTATGCATTGGGAACTTCTTTACATC
CTTCAAGGTATAAAACCTTGCACCTTTGAAGAACTAGCAACTCGTGCTCGCGATATGGAGCTAAGCATTGCTAATCGAGGAAGTAAGGATTCTTTAGTGCTGGAC
TTAGAGAAAGAAAGCAAAAGTGTTGAGAAAACTTCAAATGAGTTTTTTGGTGTAAACACAATCTCTCCCAGGAAGGATTCAAGGAAGCCTAAATCAGAGAGGAAA
GAAAATAAAGACTCCTTTAGACCCCAGATATCGGCGACCTTAAAAGAATTCTCCCCAAAAAAATTATTCTATCTTGCAAGTTCACATTACATAAATGTGGAAGAA
ATTGACAACTCTAAAATAACTGAGCAAATGACTTCTGTATTCGATCGCATCAAGCCTTCAGCTACTCGACTTTCAGTCTTTCAGAGGATGAGTATGACCACTGCA
AAAGAGGAAAGTCAATGTGTTACATACATCCCCACTCGATCTTCAGTATTTCAAAGGCTAAGCATCTCCACGTTAAAGAAAAATCAATCTTTGAAATCTGTTTTT
GATCGTCTCGAAGTGTCAAACGATCAATACGAAAGAATGATGAAGACCGTGGAAGCAAAATCATCCGATGAAGTGAATGATGAGAAGAAAATTCACAGCATTGTT
CCTTCACGTAGCCTTGTCCCGCGAGGATATGTGAGCCGGACGTATAGGCGTCATCCCCGAAAGGATGGTAGTCGTGAGGGATACTTCACCAAATTAGGTGGCCTT
GTCCCGCGAGGATGTGTGAGCCGAACGATATCCCTATATAGGCGTCATCCCCGAAAGGATGGTAGCCGTGAAGGATACTTCACCAAATTAGGTAGCCTTGTCCCA
CGAAGATGTGTGAGCCGGACGATATCCCTATATAGGCGTCATCCCCGAAAGGATGGTAGCCGTGAGGGATACTTCATCAAATTAGGTGGCCTTGTCCCGCGAGGA
TGTGTGAGCCAGAGATATCCCTATATAGGCGTCATCCCCGAAAGGATGGTAGCCGTGAGGGATACTTCACCAAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTAACCTTCATACGGGTCATATCACATATGGTTGCTCTGATGAATTCCAACTACGGGAACATCAAACTCCTCCTGTTGTTGCAAACAAAGTAATGATGCCA
CAAGAAACATCTTTGGAAGATAAATTTCTTGTTAATCATAACCCCTTATTTGATCATAGTCCTGACATTGTCTCTGTTATGATGACTGATGCAAATACTATGAAT
GAAAAAATGGCTGAAATGGAAAAGAAGCTCGCTGCATTGATGAAGACAGTGGAAGAAAGAGATTATGAAATCGTTTACCTGAAGAATCAGATTGAAAGCAGAGAT
GTTGCTGAGTCGAGTCAAACCCCTACTCTCAAGATAAATGACAAGGGAAAGACTATCGCTCAAGAAAATCAATCGCAATATTCCACTTCGATCGCTTCACTGTCT
GTTCAGCAACTCCAAGATATGATCACGAACACAATCAGAGCGCAATACGACGGATCTTCTCAAAGTTCCCTCTTGTATTCTAAGCCATATACTAAGAGAATTAAT
GATCTGAGAATACCTCCTGGATACCAACCTCCAAAATTCCAACATTTCGATGGGAAGGGCAATCCCAAACAACATATTGCTCACTTTGTCGAAACTTGTGAGAAT
GCTGGTACAAGAGGCAATCAATTGGTCAAGCAGTTCGTCCGAACATTAAAGGGAAACGCCTTTGACTGGTATACTGATCTCGAGCCTGAAACGATCGAGAGTTGG
GAACAGCTTGAAAGAGAATTCCTAAATCGCTTTTACAATACGAAGAGAACTGTCAGCATGATGGAGCTCACGAACTCCAAACAAAGAAAAGGCGAACGGTTGTTG
AATATATCAACCGATGCTCTAAGGCTTGATTGCAAAGATAGACTTACTGAACTATCCGTTGTCGAATTATGCACTCAAGGTATGCATTGGGAACTTCTTTACATC
CTTCAAGGTATAAAACCTTGCACCTTTGAAGAACTAGCAACTCGTGCTCGCGATATGGAGCTAAGCATTGCTAATCGAGGAAGTAAGGATTCTTTAGTGCTGGAC
TTAGAGAAAGAAAGCAAAAGTGTTGAGAAAACTTCAAATGAGTTTTTTGGTGTAAACACAATCTCTCCCAGGAAGGATTCAAGGAAGCCTAAATCAGAGAGGAAA
GAAAATAAAGACTCCTTTAGACCCCAGATATCGGCGACCTTAAAAGAATTCTCCCCAAAAAAATTATTCTATCTTGCAAGTTCACATTACATAAATGTGGAAGAA
ATTGACAACTCTAAAATAACTGAGCAAATGACTTCTGTATTCGATCGCATCAAGCCTTCAGCTACTCGACTTTCAGTCTTTCAGAGGATGAGTATGACCACTGCA
AAAGAGGAAAGTCAATGTGTTACATACATCCCCACTCGATCTTCAGTATTTCAAAGGCTAAGCATCTCCACGTTAAAGAAAAATCAATCTTTGAAATCTGTTTTT
GATCGTCTCGAAGTGTCAAACGATCAATACGAAAGAATGATGAAGACCGTGGAAGCAAAATCATCCGATGAAGTGAATGATGAGAAGAAAATTCACAGCATTGTT
CCTTCACGTAGCCTTGTCCCGCGAGGATATGTGAGCCGGACGTATAGGCGTCATCCCCGAAAGGATGGTAGTCGTGAGGGATACTTCACCAAATTAGGTGGCCTT
GTCCCGCGAGGATGTGTGAGCCGAACGATATCCCTATATAGGCGTCATCCCCGAAAGGATGGTAGCCGTGAAGGATACTTCACCAAATTAGGTAGCCTTGTCCCA
CGAAGATGTGTGAGCCGGACGATATCCCTATATAGGCGTCATCCCCGAAAGGATGGTAGCCGTGAGGGATACTTCATCAAATTAGGTGGCCTTGTCCCGCGAGGA
TGTGTGAGCCAGAGATATCCCTATATAGGCGTCATCCCCGAAAGGATGGTAGCCGTGAGGGATACTTCACCAAATTAG
Protein sequenceShow/hide protein sequence
MSNLHTGHITYGCSDEFQLREHQTPPVVANKVMMPQETSLEDKFLVNHNPLFDHSPDIVSVMMTDANTMNEKMAEMEKKLAALMKTVEERDYEIVYLKNQIESRD
VAESSQTPTLKINDKGKTIAQENQSQYSTSIASLSVQQLQDMITNTIRAQYDGSSQSSLLYSKPYTKRINDLRIPPGYQPPKFQHFDGKGNPKQHIAHFVETCEN
AGTRGNQLVKQFVRTLKGNAFDWYTDLEPETIESWEQLEREFLNRFYNTKRTVSMMELTNSKQRKGERLLNISTDALRLDCKDRLTELSVVELCTQGMHWELLYI
LQGIKPCTFEELATRARDMELSIANRGSKDSLVLDLEKESKSVEKTSNEFFGVNTISPRKDSRKPKSERKENKDSFRPQISATLKEFSPKKLFYLASSHYINVEE
IDNSKITEQMTSVFDRIKPSATRLSVFQRMSMTTAKEESQCVTYIPTRSSVFQRLSISTLKKNQSLKSVFDRLEVSNDQYERMMKTVEAKSSDEVNDEKKIHSIV
PSRSLVPRGYVSRTYRRHPRKDGSREGYFTKLGGLVPRGCVSRTISLYRRHPRKDGSREGYFTKLGSLVPRRCVSRTISLYRRHPRKDGSREGYFIKLGGLVPRG
CVSQRYPYIGVIPERMVAVRDTSPN