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Moc08g35310 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g35310
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNase H domain-containing protein
Genome locationchr8:25893295..25894202
RNA-Seq ExpressionMoc08g35310
SyntenyMoc08g35310
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG67779.1 hypothetical protein EZV62_009054 [Acer yangbiense]5.6e-0526.6Show/hide
Query:  SLLTLIILDGRPLPLQSSHLQLLVWVFLHHGMSPANFTKLNVDGACRTSQS--GLGMLLHDHSGSILAAKS-----------------------------
        S  TL +  G+ +  Q++   L   V  +         K+NVD A    ++    G+++ D SG IL A +                             
Subjt:  SLLTLIILDGRPLPLQSSHLQLLVWVFLHHGMSPANFTKLNVDGACRTSQS--GLGMLLHDHSGSILAAKS-----------------------------

Query:  ---KVESDSLLAIQLINGERLTLGDELNWLLEVKTLAHAIFSISFSHIPRGCNLSVHTLAKH--GLLHSATFFWHHSFPFPLWLSNLA
            +ESDSL  ++L NGE  T  D  N + +++ L      IS S+IPR CN+  H +A+   GL +S   +     P+P+WL  +A
Subjt:  ---KVESDSLLAIQLINGERLTLGDELNWLLEVKTLAHAIFSISFSHIPRGCNLSVHTLAKH--GLLHSATFFWHHSFPFPLWLSNLA

XP_018822772.1 uncharacterized protein LOC108992627 [Juglans regia]1.6e-0429.86Show/hide
Query:  PANFTKLNVDGACRTSQ--SGLGMLLHDHSGSILAAKSK--------------------------------VESDSLLAIQLINGERLTLGDELNWLLEV
        PA   KLN+DGA    Q  SG+GM+L D  G +L   SK                                VESDSLL +Q +N E+ ++    N + E+
Subjt:  PANFTKLNVDGACRTSQ--SGLGMLLHDHSGSILAAKSK--------------------------------VESDSLLAIQLINGERLTLGDELNWLLEV

Query:  KTLAHAIFSISFSHIPRGCNLSVHTLAKHGLLHSATFFWHHSFP
        K + H    +   H  R  N   H LA+          W  SFP
Subjt:  KTLAHAIFSISFSHIPRGCNLSVHTLAKHGLLHSATFFWHHSFP

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]2.9e-1439.19Show/hide
Query:  KLNVDGACRTSQSGLGMLLHDHSGSILAAKS--------------------------------KVESDSLLAIQLINGERLTLGDELNWLLEVKTLAHAI
        KLN D ACR + +  G ++ D S S++AA S                                +VESDSLLAIQLI  E  T GDE NW++E++ L    
Subjt:  KLNVDGACRTSQSGLGMLLHDHSGSILAAKS--------------------------------KVESDSLLAIQLINGERLTLGDELNWLLEVKTLAHAI

Query:  FSISFSHIPRGCNLSVHTLAKHGLLH-SATFFWHHSFPFPLWLSNLAK
          ISFSH  R CN + H LAK G+   SAT+ W   F FP WL +L +
Subjt:  FSISFSHIPRGCNLSVHTLAKHGLLH-SATFFWHHSFPFPLWLSNLAK

XP_023926910.1 uncharacterized protein LOC112038333 [Quercus suber]4.3e-0527.78Show/hide
Query:  PANFTKLNVDGA--CRTSQSGLGMLLHDHSGSILAAKSKV--------------------------------ESDSLLAIQLINGERLTLGDELNWLLEV
        PA+  K+N DGA    T++SGLG+++ D  G +LA+ SKV                                E DSLL +  +     +L      + +V
Subjt:  PANFTKLNVDGA--CRTSQSGLGMLLHDHSGSILAAKSKV--------------------------------ESDSLLAIQLINGERLTLGDELNWLLEV

Query:  KTLAHAIFSISFSHIPRGCNLSVHTLAKHGLLHSATFFWHHSFP
        K  ++++  + +SH+ R CN   H+LAKH L       W    P
Subjt:  KTLAHAIFSISFSHIPRGCNLSVHTLAKHGLLHSATFFWHHSFP

XP_041016296.1 uncharacterized protein LOC121258801 [Juglans microcarpa x Juglans regia]2.1e-0428.39Show/hide
Query:  PANFTKLNVDGAC--RTSQSGLGMLLHDHSGSILAAKSK--------------------------------VESDSLLAIQLINGERLTLGDELNWLLEV
        P +F KLNVDGA      ++G+G ++ D  G ++ A SK                                +ESDSL+ ++ +  E  +L    N + EV
Subjt:  PANFTKLNVDGAC--RTSQSGLGMLLHDHSGSILAAKSK--------------------------------VESDSLLAIQLINGERLTLGDELNWLLEV

Query:  KTLAHAIFSISFSHIPRGCNLSVHTLAKHGLLHSATFFWHHSFP----FPLWLSN
        K + H        H+PR  N   H LA+H         W HSFP      +WL N
Subjt:  KTLAHAIFSISFSHIPRGCNLSVHTLAKHGLLHSATFFWHHSFP----FPLWLSN

TrEMBL top hitse value%identityAlignment
A0A251QFD7 RNase H domain-containing protein1.3e-0426.03Show/hide
Query:  KLNVDGA--CRTSQSGLGMLLHDHSGSILAAKSK--------------------------------VESDSLLAIQLINGERLTLGDELNWLLEVKTLAH
        K+N DG    +T + G G ++ D  G +L A  K                                VESDSL AIQ++ G+R+   +    L ++  +  
Subjt:  KLNVDGA--CRTSQSGLGMLLHDHSGSILAAKSK--------------------------------VESDSLLAIQLINGERLTLGDELNWLLEVKTLAH

Query:  AIFSISFSHIPRGCNLSVHTLAKHGLLHSATFFWHHSFPFPLWLSN
         +  ++F++ PR CN++ H +A     +   F+W   F  P WL N
Subjt:  AIFSISFSHIPRGCNLSVHTLAKHGLLHSATFFWHHSFPFPLWLSN

A0A2I4ETQ3 uncharacterized protein LOC1089926277.8e-0529.86Show/hide
Query:  PANFTKLNVDGACRTSQ--SGLGMLLHDHSGSILAAKSK--------------------------------VESDSLLAIQLINGERLTLGDELNWLLEV
        PA   KLN+DGA    Q  SG+GM+L D  G +L   SK                                VESDSLL +Q +N E+ ++    N + E+
Subjt:  PANFTKLNVDGACRTSQ--SGLGMLLHDHSGSILAAKSK--------------------------------VESDSLLAIQLINGERLTLGDELNWLLEV

Query:  KTLAHAIFSISFSHIPRGCNLSVHTLAKHGLLHSATFFWHHSFP
        K + H    +   H  R  N   H LA+          W  SFP
Subjt:  KTLAHAIFSISFSHIPRGCNLSVHTLAKHGLLHSATFFWHHSFP

A0A5C7IFK3 RNase H domain-containing protein2.7e-0526.6Show/hide
Query:  SLLTLIILDGRPLPLQSSHLQLLVWVFLHHGMSPANFTKLNVDGACRTSQS--GLGMLLHDHSGSILAAKS-----------------------------
        S  TL +  G+ +  Q++   L   V  +         K+NVD A    ++    G+++ D SG IL A +                             
Subjt:  SLLTLIILDGRPLPLQSSHLQLLVWVFLHHGMSPANFTKLNVDGACRTSQS--GLGMLLHDHSGSILAAKS-----------------------------

Query:  ---KVESDSLLAIQLINGERLTLGDELNWLLEVKTLAHAIFSISFSHIPRGCNLSVHTLAKH--GLLHSATFFWHHSFPFPLWLSNLA
            +ESDSL  ++L NGE  T  D  N + +++ L      IS S+IPR CN+  H +A+   GL +S   +     P+P+WL  +A
Subjt:  ---KVESDSLLAIQLINGERLTLGDELNWLLEVKTLAHAIFSISFSHIPRGCNLSVHTLAKH--GLLHSATFFWHHSFPFPLWLSNLA

A0A6J1DX30 uncharacterized protein LOC1110248741.4e-1439.19Show/hide
Query:  KLNVDGACRTSQSGLGMLLHDHSGSILAAKS--------------------------------KVESDSLLAIQLINGERLTLGDELNWLLEVKTLAHAI
        KLN D ACR + +  G ++ D S S++AA S                                +VESDSLLAIQLI  E  T GDE NW++E++ L    
Subjt:  KLNVDGACRTSQSGLGMLLHDHSGSILAAKS--------------------------------KVESDSLLAIQLINGERLTLGDELNWLLEVKTLAHAI

Query:  FSISFSHIPRGCNLSVHTLAKHGLLH-SATFFWHHSFPFPLWLSNLAK
          ISFSH  R CN + H LAK G+   SAT+ W   F FP WL +L +
Subjt:  FSISFSHIPRGCNLSVHTLAKHGLLH-SATFFWHHSFPFPLWLSNLAK

A0A6P9ERQ1 uncharacterized protein LOC1183485951.3e-0429.86Show/hide
Query:  PANFTKLNVDGACRTSQ--SGLGMLLHDHSGSILAAKSK--------------------------------VESDSLLAIQLINGERLTLGDELNWLLEV
        PA   KLN+DGA    Q  SG+GM+L D  G +L   SK                                VESDSLL +Q +N E+ ++    N + E+
Subjt:  PANFTKLNVDGACRTSQ--SGLGMLLHDHSGSILAAKSK--------------------------------VESDSLLAIQLINGERLTLGDELNWLLEV

Query:  KTLAHAIFSISFSHIPRGCNLSVHTLAKHGLLHSATFFWHHSFP
        K + H    +   H  R  N   H LA+          W  SFP
Subjt:  KTLAHAIFSISFSHIPRGCNLSVHTLAKHGLLHSATFFWHHSFP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCATCTCCTATCGGATCGTGACTGTAAATGCAATTAGATCACTCCTTACCTTGATAATTTTAGATGGGCGACCGCTTCCCCTTCAATCCTCCCATCTTCAGCTACT
GGTTTGGGTGTTTCTCCATCATGGAATGTCCCCTGCCAATTTCACGAAATTAAATGTAGATGGTGCTTGTCGGACTTCACAATCTGGTTTGGGGATGCTTCTACATGACC
ACAGTGGCAGTATTTTGGCAGCGAAATCCAAGGTGGAATCCGACTCTCTGCTTGCCATTCAGCTCATCAATGGCGAAAGATTAACTTTAGGAGATGAACTTAATTGGCTT
TTGGAAGTAAAAACCCTAGCCCATGCCATCTTTTCAATCTCCTTCTCTCACATTCCTCGTGGTTGTAATCTCTCTGTGCACACACTTGCTAAGCATGGACTGTTGCACTC
TGCCACATTTTTTTGGCACCATTCTTTTCCTTTTCCTTTATGGTTGTCAAACTTAGCTAAGGAGACTTCCTTTCTTCTGTGCGTTCACAAAGCTTTTGGAGATGTGAGAA
GAGATAAAGATGATTTGATGATGGAATGTTTAGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTCATCTCCTATCGGATCGTGACTGTAAATGCAATTAGATCACTCCTTACCTTGATAATTTTAGATGGGCGACCGCTTCCCCTTCAATCCTCCCATCTTCAGCTACT
GGTTTGGGTGTTTCTCCATCATGGAATGTCCCCTGCCAATTTCACGAAATTAAATGTAGATGGTGCTTGTCGGACTTCACAATCTGGTTTGGGGATGCTTCTACATGACC
ACAGTGGCAGTATTTTGGCAGCGAAATCCAAGGTGGAATCCGACTCTCTGCTTGCCATTCAGCTCATCAATGGCGAAAGATTAACTTTAGGAGATGAACTTAATTGGCTT
TTGGAAGTAAAAACCCTAGCCCATGCCATCTTTTCAATCTCCTTCTCTCACATTCCTCGTGGTTGTAATCTCTCTGTGCACACACTTGCTAAGCATGGACTGTTGCACTC
TGCCACATTTTTTTGGCACCATTCTTTTCCTTTTCCTTTATGGTTGTCAAACTTAGCTAAGGAGACTTCCTTTCTTCTGTGCGTTCACAAAGCTTTTGGAGATGTGAGAA
GAGATAAAGATGATTTGATGATGGAATGTTTAGAATAG
Protein sequenceShow/hide protein sequence
MVISYRIVTVNAIRSLLTLIILDGRPLPLQSSHLQLLVWVFLHHGMSPANFTKLNVDGACRTSQSGLGMLLHDHSGSILAAKSKVESDSLLAIQLINGERLTLGDELNWL
LEVKTLAHAIFSISFSHIPRGCNLSVHTLAKHGLLHSATFFWHHSFPFPLWLSNLAKETSFLLCVHKAFGDVRRDKDDLMMECLE