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Moc08g35650 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g35650
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionPentatricopeptide repeat
Genome locationchr8:26207740..26212604
RNA-Seq ExpressionMoc08g35650
SyntenyMoc08g35650
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581232.1 putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]7.0e-5275.86Show/hide
Query:  FKLSDSLSRLPPKSSFRYSTWYSPPPPSPPHTDDLLAAVSTAINNAQTKPLASSLRRLLPSLRAHHVVNLLNHNPFSLHPLSLFSFFNWLSSQPTFRHTV
        FKLS+  + LP K SFRYSTW+SP PP+    D +LAAVSTAINN +TKPLASSLRRLLPS + HH ++L+NHNPFSL P+SLFSFFNWLSS PTFRHT+
Subjt:  FKLSDSLSRLPPKSSFRYSTWYSPPPPSPPHTDDLLAAVSTAINNAQTKPLASSLRRLLPSLRAHHVVNLLNHNPFSLHPLSLFSFFNWLSSQPTFRHTV

Query:  QSYCAMAHFLCAHRMFAESHSIVRFLVSRKGKDSASSIFAAILEV
        QSYCAMA+FLCAH+MF ES SIVRFLVSRKGKDSA+SIFAAILE+
Subjt:  QSYCAMAHFLCAHRMFAESHSIVRFLVSRKGKDSASSIFAAILEV
KAG7017964.1 putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]7.0e-5275.86Show/hide
Query:  FKLSDSLSRLPPKSSFRYSTWYSPPPPSPPHTDDLLAAVSTAINNAQTKPLASSLRRLLPSLRAHHVVNLLNHNPFSLHPLSLFSFFNWLSSQPTFRHTV
        FKLS+  + LP K SFRYSTW+SP PP+    D +LAAVSTAINN +TKPLASSLRRLLPS + HH ++L+NHNPFSL P+SLFSFFNWLSS PTFRHT+
Subjt:  FKLSDSLSRLPPKSSFRYSTWYSPPPPSPPHTDDLLAAVSTAINNAQTKPLASSLRRLLPSLRAHHVVNLLNHNPFSLHPLSLFSFFNWLSSQPTFRHTV

Query:  QSYCAMAHFLCAHRMFAESHSIVRFLVSRKGKDSASSIFAAILEV
        QSYCAMA+FLCAH+MF ES SIVRFLVSRKGKDSA+SIFAAILE+
Subjt:  QSYCAMAHFLCAHRMFAESHSIVRFLVSRKGKDSASSIFAAILEV
XP_008457121.1 PREDICTED: putative pentatricopeptide repeat-containing protein At1g09680 [Cucumis melo]7.0e-5276.87Show/hide
Query:  FKLSDSLSRLPPKSSFRYSTWYSPPPPSPPHTDDLLAAVSTAINNAQTKPLASSLRRLLPSLRAHHVVNLLNHNPFSLHPLSLFSFFNWLSSQPTFRHTV
        FKLS SLS    K SFRYSTW+SPPPP+    D LLAAVSTAINNAQTKPLASSLRRLLPS + HH ++L+NHNPFSL PLSLFSFFNWLSS PTFRHT 
Subjt:  FKLSDSLSRLPPKSSFRYSTWYSPPPPSPPHTDDLLAAVSTAINNAQTKPLASSLRRLLPSLRAHHVVNLLNHNPFSLHPLSLFSFFNWLSSQPTFRHTV

Query:  QSYCAMAHFLCAHRMFAESHSIVRFLVSRKGKDSASSIFAAILEVAG
        QSYCAMA+FL AH+MF E  SI+RFLVSRKGKDSA+S+FAAIL++AG
Subjt:  QSYCAMAHFLCAHRMFAESHSIVRFLVSRKGKDSASSIFAAILEVAG
XP_022143262.1 putative pentatricopeptide repeat-containing protein At1g09680 [Momordica charantia]4.4e-78100Show/hide
Query:  MGSPKFKLSDSLSRLPPKSSFRYSTWYSPPPPSPPHTDDLLAAVSTAINNAQTKPLASSLRRLLPSLRAHHVVNLLNHNPFSLHPLSLFSFFNWLSSQPT
        MGSPKFKLSDSLSRLPPKSSFRYSTWYSPPPPSPPHTDDLLAAVSTAINNAQTKPLASSLRRLLPSLRAHHVVNLLNHNPFSLHPLSLFSFFNWLSSQPT
Subjt:  MGSPKFKLSDSLSRLPPKSSFRYSTWYSPPPPSPPHTDDLLAAVSTAINNAQTKPLASSLRRLLPSLRAHHVVNLLNHNPFSLHPLSLFSFFNWLSSQPT

Query:  FRHTVQSYCAMAHFLCAHRMFAESHSIVRFLVSRKGKDSASSIFAAILEVAG
        FRHTVQSYCAMAHFLCAHRMFAESHSIVRFLVSRKGKDSASSIFAAILEVAG
Subjt:  FRHTVQSYCAMAHFLCAHRMFAESHSIVRFLVSRKGKDSASSIFAAILEVAG
XP_022983327.1 putative pentatricopeptide repeat-containing protein At1g09680 [Cucurbita maxima]8.3e-5375.86Show/hide
Query:  FKLSDSLSRLPPKSSFRYSTWYSPPPPSPPHTDDLLAAVSTAINNAQTKPLASSLRRLLPSLRAHHVVNLLNHNPFSLHPLSLFSFFNWLSSQPTFRHTV
        FKLS+  S LP K SFRYSTW+SPPPP+    D +LAAVSTAINN +TKPLASSLRRLLPS + HH ++L+NHNPFSL P+SLFSFFNWLSS PTFRHT+
Subjt:  FKLSDSLSRLPPKSSFRYSTWYSPPPPSPPHTDDLLAAVSTAINNAQTKPLASSLRRLLPSLRAHHVVNLLNHNPFSLHPLSLFSFFNWLSSQPTFRHTV

Query:  QSYCAMAHFLCAHRMFAESHSIVRFLVSRKGKDSASSIFAAILEV
        QSYCAMA+FLC H+MF ES SI+RFLVSRKGKDSA+SIFAAILE+
Subjt:  QSYCAMAHFLCAHRMFAESHSIVRFLVSRKGKDSASSIFAAILEV
TrEMBL top hitse value%identityAlignment
A0A1S3C629 putative pentatricopeptide repeat-containing protein At1g096803.4e-5276.87Show/hide
Query:  FKLSDSLSRLPPKSSFRYSTWYSPPPPSPPHTDDLLAAVSTAINNAQTKPLASSLRRLLPSLRAHHVVNLLNHNPFSLHPLSLFSFFNWLSSQPTFRHTV
        FKLS SLS    K SFRYSTW+SPPPP+    D LLAAVSTAINNAQTKPLASSLRRLLPS + HH ++L+NHNPFSL PLSLFSFFNWLSS PTFRHT 
Subjt:  FKLSDSLSRLPPKSSFRYSTWYSPPPPSPPHTDDLLAAVSTAINNAQTKPLASSLRRLLPSLRAHHVVNLLNHNPFSLHPLSLFSFFNWLSSQPTFRHTV

Query:  QSYCAMAHFLCAHRMFAESHSIVRFLVSRKGKDSASSIFAAILEVAG
        QSYCAMA+FL AH+MF E  SI+RFLVSRKGKDSA+S+FAAIL++AG
Subjt:  QSYCAMAHFLCAHRMFAESHSIVRFLVSRKGKDSASSIFAAILEVAG
A0A5A7TWU4 Putative pentatricopeptide repeat-containing protein3.4e-5276.87Show/hide
Query:  FKLSDSLSRLPPKSSFRYSTWYSPPPPSPPHTDDLLAAVSTAINNAQTKPLASSLRRLLPSLRAHHVVNLLNHNPFSLHPLSLFSFFNWLSSQPTFRHTV
        FKLS SLS    K SFRYSTW+SPPPP+    D LLAAVSTAINNAQTKPLASSLRRLLPS + HH ++L+NHNPFSL PLSLFSFFNWLSS PTFRHT 
Subjt:  FKLSDSLSRLPPKSSFRYSTWYSPPPPSPPHTDDLLAAVSTAINNAQTKPLASSLRRLLPSLRAHHVVNLLNHNPFSLHPLSLFSFFNWLSSQPTFRHTV

Query:  QSYCAMAHFLCAHRMFAESHSIVRFLVSRKGKDSASSIFAAILEVAG
        QSYCAMA+FL AH+MF E  SI+RFLVSRKGKDSA+S+FAAIL++AG
Subjt:  QSYCAMAHFLCAHRMFAESHSIVRFLVSRKGKDSASSIFAAILEVAG
A0A6J1CQA5 putative pentatricopeptide repeat-containing protein At1g096802.1e-78100Show/hide
Query:  MGSPKFKLSDSLSRLPPKSSFRYSTWYSPPPPSPPHTDDLLAAVSTAINNAQTKPLASSLRRLLPSLRAHHVVNLLNHNPFSLHPLSLFSFFNWLSSQPT
        MGSPKFKLSDSLSRLPPKSSFRYSTWYSPPPPSPPHTDDLLAAVSTAINNAQTKPLASSLRRLLPSLRAHHVVNLLNHNPFSLHPLSLFSFFNWLSSQPT
Subjt:  MGSPKFKLSDSLSRLPPKSSFRYSTWYSPPPPSPPHTDDLLAAVSTAINNAQTKPLASSLRRLLPSLRAHHVVNLLNHNPFSLHPLSLFSFFNWLSSQPT

Query:  FRHTVQSYCAMAHFLCAHRMFAESHSIVRFLVSRKGKDSASSIFAAILEVAG
        FRHTVQSYCAMAHFLCAHRMFAESHSIVRFLVSRKGKDSASSIFAAILEVAG
Subjt:  FRHTVQSYCAMAHFLCAHRMFAESHSIVRFLVSRKGKDSASSIFAAILEVAG
A0A6J1F410 putative pentatricopeptide repeat-containing protein At1g096809.9e-5275.17Show/hide
Query:  FKLSDSLSRLPPKSSFRYSTWYSPPPPSPPHTDDLLAAVSTAINNAQTKPLASSLRRLLPSLRAHHVVNLLNHNPFSLHPLSLFSFFNWLSSQPTFRHTV
        FKLS+  + LP K SFRYSTW+SP PP+    D +LAAVSTAINN +TKPLASSLRRLLPS + HH ++L+NHNPFSL P+SLFSFFNWLSS PTFRHT+
Subjt:  FKLSDSLSRLPPKSSFRYSTWYSPPPPSPPHTDDLLAAVSTAINNAQTKPLASSLRRLLPSLRAHHVVNLLNHNPFSLHPLSLFSFFNWLSSQPTFRHTV

Query:  QSYCAMAHFLCAHRMFAESHSIVRFLVSRKGKDSASSIFAAILEV
        QSYCAMA+FLC H+MF ES SIVRFLVSRKGKDSA+SIFAAILE+
Subjt:  QSYCAMAHFLCAHRMFAESHSIVRFLVSRKGKDSASSIFAAILEV
A0A6J1IYZ9 putative pentatricopeptide repeat-containing protein At1g096804.0e-5375.86Show/hide
Query:  FKLSDSLSRLPPKSSFRYSTWYSPPPPSPPHTDDLLAAVSTAINNAQTKPLASSLRRLLPSLRAHHVVNLLNHNPFSLHPLSLFSFFNWLSSQPTFRHTV
        FKLS+  S LP K SFRYSTW+SPPPP+    D +LAAVSTAINN +TKPLASSLRRLLPS + HH ++L+NHNPFSL P+SLFSFFNWLSS PTFRHT+
Subjt:  FKLSDSLSRLPPKSSFRYSTWYSPPPPSPPHTDDLLAAVSTAINNAQTKPLASSLRRLLPSLRAHHVVNLLNHNPFSLHPLSLFSFFNWLSSQPTFRHTV

Query:  QSYCAMAHFLCAHRMFAESHSIVRFLVSRKGKDSASSIFAAILEV
        QSYCAMA+FLC H+MF ES SI+RFLVSRKGKDSA+SIFAAILE+
Subjt:  QSYCAMAHFLCAHRMFAESHSIVRFLVSRKGKDSASSIFAAILEV
SwissProt top hitse value%identityAlignment
O04491 Putative pentatricopeptide repeat-containing protein At1g096809.0e-2644.44Show/hide
Query:  LSDSLSRLPPKSSFRYSTWYSPPPPSPPHTDD--LLAAVSTAINNAQTKPL--------ASSLRRLLPSLRAHHVVNLLNHNPFSLHPLSLFSFFNWLSS
        LS S  +   ++SF  STWYS    S    DD  +L  +S AI ++   P           S+R++LPSL  HHVV+L+NHNP SL   S+F+FF ++SS
Subjt:  LSDSLSRLPPKSSFRYSTWYSPPPPSPPHTDD--LLAAVSTAINNAQTKPL--------ASSLRRLLPSLRAHHVVNLLNHNPFSLHPLSLFSFFNWLSS

Query:  QPTFRHTVQSYCAMAHFLCAHRMFAESHSIVRFLVSRKGKDSASSIFAAILEV
        QP FR TV++Y  +A FL  H MF E+ S++  +VSRKGK+SASS+F +++E+
Subjt:  QPTFRHTVQSYCAMAHFLCAHRMFAESHSIVRFLVSRKGKDSASSIFAAILEV
Arabidopsis top hitse value%identityAlignment
AT1G09680.1 Pentatricopeptide repeat (PPR) superfamily protein6.4e-2744.44Show/hide
Query:  LSDSLSRLPPKSSFRYSTWYSPPPPSPPHTDD--LLAAVSTAINNAQTKPL--------ASSLRRLLPSLRAHHVVNLLNHNPFSLHPLSLFSFFNWLSS
        LS S  +   ++SF  STWYS    S    DD  +L  +S AI ++   P           S+R++LPSL  HHVV+L+NHNP SL   S+F+FF ++SS
Subjt:  LSDSLSRLPPKSSFRYSTWYSPPPPSPPHTDD--LLAAVSTAINNAQTKPL--------ASSLRRLLPSLRAHHVVNLLNHNPFSLHPLSLFSFFNWLSS

Query:  QPTFRHTVQSYCAMAHFLCAHRMFAESHSIVRFLVSRKGKDSASSIFAAILEV
        QP FR TV++Y  +A FL  H MF E+ S++  +VSRKGK+SASS+F +++E+
Subjt:  QPTFRHTVQSYCAMAHFLCAHRMFAESHSIVRFLVSRKGKDSASSIFAAILEV
AT2G02150.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.2e-0437.25Show/hide
Query:  PLSLFSFFNWLSSQPTFRHTVQSYCAMAHFLCAHRMFAESHSIVRFLVSRK
        P   F FF W  ++  F+H+V+SYC +AH L   RM+ +++S+++ +V  K
Subjt:  PLSLFSFFNWLSSQPTFRHTVQSYCAMAHFLCAHRMFAESHSIVRFLVSRK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCAGTCCCAAATTCAAACTCTCCGATTCCCTCTCTCGTCTTCCTCCCAAATCTTCCTTCCGATACTCCACCTGGTACTCGCCGCCGCCGCCGTCGCCGCCT
CACACCGACGATCTTCTCGCCGCCGTCTCCACAGCCATCAACAACGCCCAAACAAAGCCTCTCGCCTCTTCTCTCCGGCGGCTCCTCCCTTCCCTCAGAGCCCAC
CATGTGGTCAATCTCCTCAACCACAACCCGTTCTCTCTCCACCCTCTCTCTCTCTTCTCCTTCTTCAACTGGCTCTCCTCTCAGCCCACCTTTCGCCACACCGTC
CAATCCTACTGCGCGATGGCTCACTTCCTCTGCGCCCACCGAATGTTCGCGGAATCTCATTCGATCGTTCGATTCCTCGTCTCCCGCAAAGGGAAAGACTCAGCG
TCTTCGATCTTTGCCGCGATTCTCGAAGTTGCAGGTCCAGTTCGAGATTTAATCATTTCCTGTGATTCAAAAGAAAAGAAGGGAGCAGACCAAAGTCCTTGCATA
GTGAAAGTTGCTCAAATATTTTGGTCTAAAAGTACCCAGTTGATAGGATTCCATTCCCAAGAAGGGTTGCGGGCGAATAGGAACTGGATCCATTTGAGTAGCCGC
CGGACGTGCTGTTATGGAATCCGAAGATCATCCGCTCATGACCGCCTTCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCAGTCCCAAATTCAAACTCTCCGATTCCCTCTCTCGTCTTCCTCCCAAATCTTCCTTCCGATACTCCACCTGGTACTCGCCGCCGCCGCCGTCGCCGCCT
CACACCGACGATCTTCTCGCCGCCGTCTCCACAGCCATCAACAACGCCCAAACAAAGCCTCTCGCCTCTTCTCTCCGGCGGCTCCTCCCTTCCCTCAGAGCCCAC
CATGTGGTCAATCTCCTCAACCACAACCCGTTCTCTCTCCACCCTCTCTCTCTCTTCTCCTTCTTCAACTGGCTCTCCTCTCAGCCCACCTTTCGCCACACCGTC
CAATCCTACTGCGCGATGGCTCACTTCCTCTGCGCCCACCGAATGTTCGCGGAATCTCATTCGATCGTTCGATTCCTCGTCTCCCGCAAAGGGAAAGACTCAGCG
TCTTCGATCTTTGCCGCGATTCTCGAAGTTGCAGGTCCAGTTCGAGATTTAATCATTTCCTGTGATTCAAAAGAAAAGAAGGGAGCAGACCAAAGTCCTTGCATA
GTGAAAGTTGCTCAAATATTTTGGTCTAAAAGTACCCAGTTGATAGGATTCCATTCCCAAGAAGGGTTGCGGGCGAATAGGAACTGGATCCATTTGAGTAGCCGC
CGGACGTGCTGTTATGGAATCCGAAGATCATCCGCTCATGACCGCCTTCTTTGA
Protein sequenceShow/hide protein sequence
MGSPKFKLSDSLSRLPPKSSFRYSTWYSPPPPSPPHTDDLLAAVSTAINNAQTKPLASSLRRLLPSLRAHHVVNLLNHNPFSLHPLSLFSFFNWLSSQPTFRHTV
QSYCAMAHFLCAHRMFAESHSIVRFLVSRKGKDSASSIFAAILEVAGPVRDLIISCDSKEKKGADQSPCIVKVAQIFWSKSTQLIGFHSQEGLRANRNWIHLSSR
RTCCYGIRRSSAHDRLL