; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc08g35880 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g35880
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr8:26478346..26481002
RNA-Seq ExpressionMoc08g35880
SyntenyMoc08g35880
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN83427.1 hypothetical protein VITISV_009103 [Vitis vinifera]8.0e-2033.64Show/hide
Query:  SRTFFLRRPLKDEEFIDWLCLSHILNEIT-PTSLDDLWIWPLKANRSFSTKSTYRILTTNSSLTASTFFPR--IWQGKCPRKVKFFCWELSQGAINTHDM
        S  F  RR L D E  D   L H LN +   TS+ D+  W L ++  F+ KS +  L  +  L +S FFP   +W+ + P KVK F W ++   +NT+D+
Subjt:  SRTFFLRRPLKDEEFIDWLCLSHILNEIT-PTSLDDLWIWPLKANRSFSTKSTYRILTTNSSLTASTFFPR--IWQGKCPRKVKFFCWELSQGAINTHDM

Query:  GQRKLPHFALSPDCCRLCYGAPETQGHLFIHVHMLPVLNYLLTAFGWKTILHNKPSTFLDQLL---AGHPFKKGRATLWVQFVQAFLWSLWLERNNRVFI
         Q + PH A+SPD C+LC    E+  HLF+H  +   L + L  F    +    P +  D +     G    K    LW +   A +W +W ERN R+F 
Subjt:  GQRKLPHFALSPDCCRLCYGAPETQGHLFIHVHMLPVLNYLLTAFGWKTILHNKPSTFLDQLL---AGHPFKKGRATLWVQFVQAFLWSLWLERNNRVFI

Query:  EKALPFDIFFDRVTILA
        +KA      +D +  LA
Subjt:  EKALPFDIFFDRVTILA

KAF7822363.1 auxin transport protein BIG [Senna tora]1.0e-2233.99Show/hide
Query:  LKDEEFIDWLCLSHILNEITPTSLDDLWIWPLKANRSFSTKSTYRILTTNSSLTASTFFPRIWQGKCPRKVKFFCWELSQGAINTHDMGQRKLPHFALSP
        L D    D   L  +L     T+  D  +W L  + S++  S +R LT +++          W+ K P KVK F W  +   INT+D+ Q + P+ ALSP
Subjt:  LKDEEFIDWLCLSHILNEITPTSLDDLWIWPLKANRSFSTKSTYRILTTNSSLTASTFFPRIWQGKCPRKVKFFCWELSQGAINTHDMGQRKLPHFALSP

Query:  DCCRLCYGAPETQGHLFIHVHMLPVL-NYLLTAFGWKTILHNKPSTFLDQLLAGHPFKKGRATLWVQFVQAFLWSLWLERNNRVFIEKALPFDIFFDRVT
        + C +C+   ET  HLF+H  +  +L N L   F    +      TFL     G    K   TLW   + A LW LWLERN RVF  K +   + +DR+T
Subjt:  DCCRLCYGAPETQGHLFIHVHMLPVL-NYLLTAFGWKTILHNKPSTFLDQLLAGHPFKKGRATLWVQFVQAFLWSLWLERNNRVFIEKALPFDIFFDRVT

Query:  ILA
          A
Subjt:  ILA

RVW29541.1 Kinesin-like protein KIN-14I [Vitis vinifera]1.8e-1932.89Show/hide
Query:  GGSHKEPWTATSRTFFLRRPLKDEEFIDWLCLSHILNEIT-PTSLDDLWIWPLKANRSFSTKSTYRILTTNSSLTASTFFPR--IWQGKCPRKVKFFCWE
        G  H   W      F  RR L D E  D  CL H L+ +   TS  D   W L ++  F+ KS +  L+      +S FFP   +W+ + P KVK F W 
Subjt:  GGSHKEPWTATSRTFFLRRPLKDEEFIDWLCLSHILNEIT-PTSLDDLWIWPLKANRSFSTKSTYRILTTNSSLTASTFFPR--IWQGKCPRKVKFFCWE

Query:  LSQGAINTHDMGQRKLPHFALSPDCCRLCYGAPETQGHLFIHVHMLPVLNYLLTAFGWKTILHNKPSTFLDQLL---AGHPFKKGRATLWVQFVQAFLWS
        ++   +NT+D+ Q + PH A SPD C+LC    E+  HLF+H  +   L + L  F    +    P + LD +     G    K    LW     A +W 
Subjt:  LSQGAINTHDMGQRKLPHFALSPDCCRLCYGAPETQGHLFIHVHMLPVLNYLLTAFGWKTILHNKPSTFLDQLL---AGHPFKKGRATLWVQFVQAFLWS

Query:  LWLERNNRVFIEKALPFDIFFDRVTILA
        +W ERN R+F +KA      +D +  LA
Subjt:  LWLERNNRVFIEKALPFDIFFDRVTILA

RVW78885.1 Kinesin-like protein KIN-14I [Vitis vinifera]1.4e-1934.1Show/hide
Query:  SRTFFLRRPLKDEEFIDWLCLSHILNEIT-PTSLDDLWIWPLKANRSFSTKSTYRILTTNSSLTASTFFPR--IWQGKCPRKVKFFCWELSQGAINTHDM
        S  F  RR L D E  D  CL H L+ +   TS  D   W L ++  F+ KS +   T +    +S FFP   +W+ + P KVK F W ++   +NT+D+
Subjt:  SRTFFLRRPLKDEEFIDWLCLSHILNEIT-PTSLDDLWIWPLKANRSFSTKSTYRILTTNSSLTASTFFPR--IWQGKCPRKVKFFCWELSQGAINTHDM

Query:  GQRKLPHFALSPDCCRLCYGAPETQGHLFIHVHMLPVLNYLLTAFGWKTILHNKPSTFLDQLL---AGHPFKKGRATLWVQFVQAFLWSLWLERNNRVFI
         Q + PH ALSPD C+LC    E+  HLF+H  +   L + L  F    +    P + LD +     G    K    LW     A +W +W ERN R+F 
Subjt:  GQRKLPHFALSPDCCRLCYGAPETQGHLFIHVHMLPVLNYLLTAFGWKTILHNKPSTFLDQLL---AGHPFKKGRATLWVQFVQAFLWSLWLERNNRVFI

Query:  EKALPFDIFFDRVTILA
        +KA      +D +  LA
Subjt:  EKALPFDIFFDRVTILA

XP_030483308.1 uncharacterized protein LOC115699905 [Cannabis sativa]8.0e-2033.33Show/hide
Query:  SRTFFLRRPLKDEEFIDWLCLSHILNEITPTS-LDDLWIWPLKANRSFSTKSTYRILTTNSSLTASTFFPRIWQGKCPRKVKFFCWELSQGAINTHDMGQ
        S  F  RR L + E  + + L  +L  I   + L+D+ +W    +  FS KST+   T++ +     +   +W+  CP KVK F W ++ G IN H M Q
Subjt:  SRTFFLRRPLKDEEFIDWLCLSHILNEITPTS-LDDLWIWPLKANRSFSTKSTYRILTTNSSLTASTFFPRIWQGKCPRKVKFFCWELSQGAINTHDMGQ

Query:  RKLPHFALSPDCCRLCYGAPETQGHLFIHVHMLPVL-NYLLTAFGWKTILHNKPSTFLDQLLAGHPFKKGRATLWVQFVQAFLWSLWLERNNRVF
        ++ P   LSP  C  C  + E   HLF+   +   L   LL AF  + +L       +   + G   +KGR+ LW   V A +W +WLERNNR+F
Subjt:  RKLPHFALSPDCCRLCYGAPETQGHLFIHVHMLPVL-NYLLTAFGWKTILHNKPSTFLDQLLAGHPFKKGRATLWVQFVQAFLWSLWLERNNRVF

TrEMBL top hitse value%identityAlignment
A0A438D291 Kinesin-like protein KIN-14I8.7e-2032.89Show/hide
Query:  GGSHKEPWTATSRTFFLRRPLKDEEFIDWLCLSHILNEIT-PTSLDDLWIWPLKANRSFSTKSTYRILTTNSSLTASTFFPR--IWQGKCPRKVKFFCWE
        G  H   W      F  RR L D E  D  CL H L+ +   TS  D   W L ++  F+ KS +  L+      +S FFP   +W+ + P KVK F W 
Subjt:  GGSHKEPWTATSRTFFLRRPLKDEEFIDWLCLSHILNEIT-PTSLDDLWIWPLKANRSFSTKSTYRILTTNSSLTASTFFPR--IWQGKCPRKVKFFCWE

Query:  LSQGAINTHDMGQRKLPHFALSPDCCRLCYGAPETQGHLFIHVHMLPVLNYLLTAFGWKTILHNKPSTFLDQLL---AGHPFKKGRATLWVQFVQAFLWS
        ++   +NT+D+ Q + PH A SPD C+LC    E+  HLF+H  +   L + L  F    +    P + LD +     G    K    LW     A +W 
Subjt:  LSQGAINTHDMGQRKLPHFALSPDCCRLCYGAPETQGHLFIHVHMLPVLNYLLTAFGWKTILHNKPSTFLDQLL---AGHPFKKGRATLWVQFVQAFLWS

Query:  LWLERNNRVFIEKALPFDIFFDRVTILA
        +W ERN R+F +KA      +D +  LA
Subjt:  LWLERNNRVFIEKALPFDIFFDRVTILA

A0A438H315 Kinesin-like protein KIN-14I6.6e-2034.1Show/hide
Query:  SRTFFLRRPLKDEEFIDWLCLSHILNEIT-PTSLDDLWIWPLKANRSFSTKSTYRILTTNSSLTASTFFPR--IWQGKCPRKVKFFCWELSQGAINTHDM
        S  F  RR L D E  D  CL H L+ +   TS  D   W L ++  F+ KS +   T +    +S FFP   +W+ + P KVK F W ++   +NT+D+
Subjt:  SRTFFLRRPLKDEEFIDWLCLSHILNEIT-PTSLDDLWIWPLKANRSFSTKSTYRILTTNSSLTASTFFPR--IWQGKCPRKVKFFCWELSQGAINTHDM

Query:  GQRKLPHFALSPDCCRLCYGAPETQGHLFIHVHMLPVLNYLLTAFGWKTILHNKPSTFLDQLL---AGHPFKKGRATLWVQFVQAFLWSLWLERNNRVFI
         Q + PH ALSPD C+LC    E+  HLF+H  +   L + L  F    +    P + LD +     G    K    LW     A +W +W ERN R+F 
Subjt:  GQRKLPHFALSPDCCRLCYGAPETQGHLFIHVHMLPVLNYLLTAFGWKTILHNKPSTFLDQLL---AGHPFKKGRATLWVQFVQAFLWSLWLERNNRVFI

Query:  EKALPFDIFFDRVTILA
        +KA      +D +  LA
Subjt:  EKALPFDIFFDRVTILA

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein1.5e-1929.82Show/hide
Query:  GSHKEPWTATSR--TFFLRRPLKDEEFIDWLCLSHILNEITPTSLDDLW----IWPLKANRSFSTKSTYRILTTNSSLTASTFFP----RIWQGKCPRKV
        GS K+ W  + +     + RPL+D E   W    H +    PT L D      +W L +N  F T S  + L + +S + + F P     +W+   P+K 
Subjt:  GSHKEPWTATSR--TFFLRRPLKDEEFIDWLCLSHILNEITPTSLDDLW----IWPLKANRSFSTKSTYRILTTNSSLTASTFFP----RIWQGKCPRKV

Query:  KFFCWELSQGAINTHDMGQRKLPHFALSPDCCRLCYGAPETQGHLFIHV-HMLPVLNYLLTAFGWKTILHNKPSTFLDQLLAGHPFKKGRATLWVQFVQA
        KFF W L  G INT D  Q++LP++ LSP+ C +C  + E   HLFIH  +   + +       W +  ++  S  L Q +     K  +  +    +  
Subjt:  KFFCWELSQGAINTHDMGQRKLPHFALSPDCCRLCYGAPETQGHLFIHV-HMLPVLNYLLTAFGWKTILHNKPSTFLDQLLAGHPFKKGRATLWVQFVQA

Query:  FLWSLWLERNNRVFIEKALPFDIFFDRV
         LW +WLERNNR+F ++   F   ++ +
Subjt:  FLWSLWLERNNRVFIEKALPFDIFFDRV

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein1.5e-1929.82Show/hide
Query:  GSHKEPWTATSR--TFFLRRPLKDEEFIDWLCLSHILNEITPTSLDDLW----IWPLKANRSFSTKSTYRILTTNSSLTASTFFP----RIWQGKCPRKV
        GS K+ W  + +     + RPL+D E   W    H +    PT L D      +W L +N  F T S  + L + +S + + F P     +W+   P+K 
Subjt:  GSHKEPWTATSR--TFFLRRPLKDEEFIDWLCLSHILNEITPTSLDDLW----IWPLKANRSFSTKSTYRILTTNSSLTASTFFP----RIWQGKCPRKV

Query:  KFFCWELSQGAINTHDMGQRKLPHFALSPDCCRLCYGAPETQGHLFIHV-HMLPVLNYLLTAFGWKTILHNKPSTFLDQLLAGHPFKKGRATLWVQFVQA
        KFF W L  G INT D  Q++LP++ LSP+ C +C  + E   HLFIH  +   + +       W +  ++  S  L Q +     K  +  +    +  
Subjt:  KFFCWELSQGAINTHDMGQRKLPHFALSPDCCRLCYGAPETQGHLFIHV-HMLPVLNYLLTAFGWKTILHNKPSTFLDQLLAGHPFKKGRATLWVQFVQA

Query:  FLWSLWLERNNRVFIEKALPFDIFFDRV
         LW +WLERNNR+F ++   F   ++ +
Subjt:  FLWSLWLERNNRVFIEKALPFDIFFDRV

A5BN97 Reverse transcriptase domain-containing protein3.9e-2033.64Show/hide
Query:  SRTFFLRRPLKDEEFIDWLCLSHILNEIT-PTSLDDLWIWPLKANRSFSTKSTYRILTTNSSLTASTFFPR--IWQGKCPRKVKFFCWELSQGAINTHDM
        S  F  RR L D E  D   L H LN +   TS+ D+  W L ++  F+ KS +  L  +  L +S FFP   +W+ + P KVK F W ++   +NT+D+
Subjt:  SRTFFLRRPLKDEEFIDWLCLSHILNEIT-PTSLDDLWIWPLKANRSFSTKSTYRILTTNSSLTASTFFPR--IWQGKCPRKVKFFCWELSQGAINTHDM

Query:  GQRKLPHFALSPDCCRLCYGAPETQGHLFIHVHMLPVLNYLLTAFGWKTILHNKPSTFLDQLL---AGHPFKKGRATLWVQFVQAFLWSLWLERNNRVFI
         Q + PH A+SPD C+LC    E+  HLF+H  +   L + L  F    +    P +  D +     G    K    LW +   A +W +W ERN R+F 
Subjt:  GQRKLPHFALSPDCCRLCYGAPETQGHLFIHVHMLPVLNYLLTAFGWKTILHNKPSTFLDQLL---AGHPFKKGRATLWVQFVQAFLWSLWLERNNRVFI

Query:  EKALPFDIFFDRVTILA
        +KA      +D +  LA
Subjt:  EKALPFDIFFDRVTILA

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657509.9e-0527.84Show/hide
Query:  TSLDDLWIWPLKANRSFSTKSTYRILTTNS--SLTASTFFPRIWQGKCPRKVKFFCWELSQGAINTHDMGQRKLPHFALSPDCCRLCYGAPETQGHL
        T   D   W    +  FS +S Y +LT +       ++FF  +W+ + P +VK F W +   A+ T +   R+  H + S + C++C G  E+  H+
Subjt:  TSLDDLWIWPLKANRSFSTKSTYRILTTNS--SLTASTFFPRIWQGKCPRKVKFFCWELSQGAINTHDMGQRKLPHFALSPDCCRLCYGAPETQGHL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGAGGTCTCGGTGTTGAGAACATCAAACAAAGGAACCGAGCCTTACTATCCAAATGGATTTGGAGATACATTACCGAGCCAAACCAATTGTGGAGGAAGCTCATC
ACGGCAAAATACACTGGTTCTTTCTCGATTACTTGGCCAACCATTCGCTCCAACTTTTATAAAGGGCCATGTACTGGAATCATACGACAAACCAGCATTATTAAGACTTA
TGCCACCAGCAGAATGGGGGAAAGAAGTCATCTCAACTTTTGGCATGACAGGTGGCTCACACAAGGAACCTTGGACAGCCACTTCCCGAACCTTTTTTCTTCGAAGACCT
CTTAAGGATGAGGAGTTTATAGATTGGTTGTGTCTCTCCCACATCCTAAATGAGATTACCCCCACATCCCTTGATGACCTATGGATTTGGCCCCTAAAAGCAAATAGATC
CTTCTCCACCAAATCGACTTATCGAATCCTCACTACCAATAGCTCCCTCACGGCCTCCACCTTCTTCCCACGCATTTGGCAAGGAAAGTGCCCTAGAAAAGTAAAATTCT
TCTGCTGGGAGCTTAGTCAGGGGGCGATAAACACCCATGATATGGGTCAGAGAAAGCTCCCACACTTTGCCCTCTCCCCTGATTGTTGTCGCTTATGTTATGGAGCACCA
GAGACTCAGGGCCATCTTTTCATTCATGTGCATATGCTACCCGTTTTGAATTATCTCCTCACTGCTTTTGGGTGGAAGACAATTCTACACAACAAACCATCTACCTTCCT
TGATCAATTATTGGCGGGACATCCATTCAAGAAGGGAAGAGCTACCCTTTGGGTTCAGTTTGTTCAGGCCTTTCTTTGGAGCTTATGGTTGGAGAGGAACAATAGGGTCT
TTATTGAAAAAGCCCTTCCTTTTGATATCTTTTTTGATAGAGTTACTATTCTAGCACTTGATAGTGTGGGGGTTTCACTAGGTTCCACTTGCGGAGATGAATGCAATCTT
TTTCCTTATTGCCCGACCAAAAAAGCTTTCTATAGATACAACATAGGAGTGGTTCAAACTTTGTATTCTCAACTCCACTTTTTGAAGGAGGGGTTGCCAAGGAGGAAGGG
CCTAAGTTCAAAAGAATTTGCTATAATTGATACACCACCAAGAGACCGTGTGTTGTATGTCACAATCGCACCTTTTCAAAGCAGCTCGAACGATTGTGCGGCACTTGCTC
TAGCTCAAACGAGCAAGTCAGCCGAGAAAAACTGTGTAGACGTCCTAAGTGGTGAGGAGTCACTCGGTGGCCTACAGGGCCTGTGTGAACTCCGATTGGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGAGGTCTCGGTGTTGAGAACATCAAACAAAGGAACCGAGCCTTACTATCCAAATGGATTTGGAGATACATTACCGAGCCAAACCAATTGTGGAGGAAGCTCATC
ACGGCAAAATACACTGGTTCTTTCTCGATTACTTGGCCAACCATTCGCTCCAACTTTTATAAAGGGCCATGTACTGGAATCATACGACAAACCAGCATTATTAAGACTTA
TGCCACCAGCAGAATGGGGGAAAGAAGTCATCTCAACTTTTGGCATGACAGGTGGCTCACACAAGGAACCTTGGACAGCCACTTCCCGAACCTTTTTTCTTCGAAGACCT
CTTAAGGATGAGGAGTTTATAGATTGGTTGTGTCTCTCCCACATCCTAAATGAGATTACCCCCACATCCCTTGATGACCTATGGATTTGGCCCCTAAAAGCAAATAGATC
CTTCTCCACCAAATCGACTTATCGAATCCTCACTACCAATAGCTCCCTCACGGCCTCCACCTTCTTCCCACGCATTTGGCAAGGAAAGTGCCCTAGAAAAGTAAAATTCT
TCTGCTGGGAGCTTAGTCAGGGGGCGATAAACACCCATGATATGGGTCAGAGAAAGCTCCCACACTTTGCCCTCTCCCCTGATTGTTGTCGCTTATGTTATGGAGCACCA
GAGACTCAGGGCCATCTTTTCATTCATGTGCATATGCTACCCGTTTTGAATTATCTCCTCACTGCTTTTGGGTGGAAGACAATTCTACACAACAAACCATCTACCTTCCT
TGATCAATTATTGGCGGGACATCCATTCAAGAAGGGAAGAGCTACCCTTTGGGTTCAGTTTGTTCAGGCCTTTCTTTGGAGCTTATGGTTGGAGAGGAACAATAGGGTCT
TTATTGAAAAAGCCCTTCCTTTTGATATCTTTTTTGATAGAGTTACTATTCTAGCACTTGATAGTGTGGGGGTTTCACTAGGTTCCACTTGCGGAGATGAATGCAATCTT
TTTCCTTATTGCCCGACCAAAAAAGCTTTCTATAGATACAACATAGGAGTGGTTCAAACTTTGTATTCTCAACTCCACTTTTTGAAGGAGGGGTTGCCAAGGAGGAAGGG
CCTAAGTTCAAAAGAATTTGCTATAATTGATACACCACCAAGAGACCGTGTGTTGTATGTCACAATCGCACCTTTTCAAAGCAGCTCGAACGATTGTGCGGCACTTGCTC
TAGCTCAAACGAGCAAGTCAGCCGAGAAAAACTGTGTAGACGTCCTAAGTGGTGAGGAGTCACTCGGTGGCCTACAGGGCCTGTGTGAACTCCGATTGGCTTGA
Protein sequenceShow/hide protein sequence
MKEVSVLRTSNKGTEPYYPNGFGDTLPSQTNCGGSSSRQNTLVLSRLLGQPFAPTFIKGHVLESYDKPALLRLMPPAEWGKEVISTFGMTGGSHKEPWTATSRTFFLRRP
LKDEEFIDWLCLSHILNEITPTSLDDLWIWPLKANRSFSTKSTYRILTTNSSLTASTFFPRIWQGKCPRKVKFFCWELSQGAINTHDMGQRKLPHFALSPDCCRLCYGAP
ETQGHLFIHVHMLPVLNYLLTAFGWKTILHNKPSTFLDQLLAGHPFKKGRATLWVQFVQAFLWSLWLERNNRVFIEKALPFDIFFDRVTILALDSVGVSLGSTCGDECNL
FPYCPTKKAFYRYNIGVVQTLYSQLHFLKEGLPRRKGLSSKEFAIIDTPPRDRVLYVTIAPFQSSSNDCAALALAQTSKSAEKNCVDVLSGEESLGGLQGLCELRLA