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Moc08g36280 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g36280
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H-like superfamily protein
Genome locationchr8:26897281..26897942
RNA-Seq ExpressionMoc08g36280
SyntenyMoc08g36280
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]1.8e-112100Show/hide
Query:  MVEHFYGNVRVHWTNKDSWNWLVNMLSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQQNDGYLPRGRENLNM
        MVEHFYGNVRVHWTNKDSWNWLVNMLSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQQNDGYLPRGRENLNM
Subjt:  MVEHFYGNVRVHWTNKDSWNWLVNMLSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQQNDGYLPRGRENLNM

Query:  LGVRWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSRSPIYLESDSVEVIRLMKKEDVDLT
        LGVRWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSRSPIYLESDSVEVIRLMKKEDVDLT
Subjt:  LGVRWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSRSPIYLESDSVEVIRLMKKEDVDLT

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]7.6e-2640.12Show/hide
Query:  DEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQQNDGYLPRGRENLNMLGVRWSAPPTNCWKLNTDASWSEEREV
        +EE   SM+IAWQIWE RN+SIF+G   + + +  +I  +I ++  + T +    +S   D +L R  E  +  G +W  P +N WKLNT+A+W  +   
Subjt:  DEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQQNDGYLPRGRENLNMLGVRWSAPPTNCWKLNTDASWSEEREV

Query:  GGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSRSPIYLESDSVEVIRLMKKEDVDLT
        GGIGWIL D +GE++ A    IR ++ I  LE+M I  GL+ I  +   PI+LESDS+E I L+ ++  D T
Subjt:  GGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSRSPIYLESDSVEVIRLMKKEDVDLT

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]1.3e-2837.89Show/hide
Query:  HFYGNVRVHWTNKDSWNWLVNMLSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQQNDGYLPRGRENLNMLGV
        +F+   R +WT K+ W WL++   +EE   SM+IA QIWE RN+SIF+G   + + +  +I  +I ++  + T     +R  ++   + R  +N      
Subjt:  HFYGNVRVHWTNKDSWNWLVNMLSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQQNDGYLPRGRENLNMLGV

Query:  RWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSRSPIYLESDSVEVIRLMKK
        RW  P +N WKLNTDA+W  +    GIGWIL D +GE++  G   IR ++ I  LE+M I  GL+ I  +   PI+LESDS+E I L+ +
Subjt:  RWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSRSPIYLESDSVEVIRLMKK

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]1.3e-2838.59Show/hide
Query:  RVHWTNKDSWNWLVNMLSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQQNDGYLPRGRENLNMLGVRWSAPP
        R +WT K+ W WL++   +EE   SM+IA QIWE RN+SIF+G   + + +  +I  +I ++  + T     +R  ++   + R  +N      RW  P 
Subjt:  RVHWTNKDSWNWLVNMLSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQQNDGYLPRGRENLNMLGVRWSAPP

Query:  TNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSRSPIYLESDSVEVIRLMKK
        +N WKLNTDA+W  +    GIGWIL D +GE++  G   IR ++ I  LE+M I  GL+ I  +   PI+LESDS+E I L+ +
Subjt:  TNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSRSPIYLESDSVEVIRLMKK

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.6e-2340Show/hide
Query:  DEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQQNDGYLPRGRENLNMLGVRWSAPPTNCWKLNTDASWSEEREV
        +EE   SM+IAWQIWE RN+SIF+G   + + +   I  +I ++  + T +    +S   D +L R R   N  G RW  P +N WKLNTDA+W  +   
Subjt:  DEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQQNDGYLPRGRENLNMLGVRWSAPPTNCWKLNTDASWSEEREV

Query:  GGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQF--------INMQSRSPIYLESDSVEVIRLMKKEDVDLT
        GGIGWIL D +GE++ A    IR ++ I  LE+M I  GL+         I  +   PI+LESDS+E I L+ ++  D T
Subjt:  GGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQF--------INMQSRSPIYLESDSVEVIRLMKKEDVDLT

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134123.7e-2640.12Show/hide
Query:  DEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQQNDGYLPRGRENLNMLGVRWSAPPTNCWKLNTDASWSEEREV
        +EE   SM+IAWQIWE RN+SIF+G   + + +  +I  +I ++  + T +    +S   D +L R  E  +  G +W  P +N WKLNT+A+W  +   
Subjt:  DEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQQNDGYLPRGRENLNMLGVRWSAPPTNCWKLNTDASWSEEREV

Query:  GGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSRSPIYLESDSVEVIRLMKKEDVDLT
        GGIGWIL D +GE++ A    IR ++ I  LE+M I  GL+ I  +   PI+LESDS+E I L+ ++  D T
Subjt:  GGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSRSPIYLESDSVEVIRLMKKEDVDLT

A0A6J1CQG0 uncharacterized protein LOC1110132168.8e-113100Show/hide
Query:  MVEHFYGNVRVHWTNKDSWNWLVNMLSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQQNDGYLPRGRENLNM
        MVEHFYGNVRVHWTNKDSWNWLVNMLSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQQNDGYLPRGRENLNM
Subjt:  MVEHFYGNVRVHWTNKDSWNWLVNMLSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQQNDGYLPRGRENLNM

Query:  LGVRWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSRSPIYLESDSVEVIRLMKKEDVDLT
        LGVRWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSRSPIYLESDSVEVIRLMKKEDVDLT
Subjt:  LGVRWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSRSPIYLESDSVEVIRLMKKEDVDLT

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X16.1e-2937.89Show/hide
Query:  HFYGNVRVHWTNKDSWNWLVNMLSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQQNDGYLPRGRENLNMLGV
        +F+   R +WT K+ W WL++   +EE   SM+IA QIWE RN+SIF+G   + + +  +I  +I ++  + T     +R  ++   + R  +N      
Subjt:  HFYGNVRVHWTNKDSWNWLVNMLSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQQNDGYLPRGRENLNMLGV

Query:  RWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSRSPIYLESDSVEVIRLMKK
        RW  P +N WKLNTDA+W  +    GIGWIL D +GE++  G   IR ++ I  LE+M I  GL+ I  +   PI+LESDS+E I L+ +
Subjt:  RWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSRSPIYLESDSVEVIRLMKK

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X26.1e-2938.59Show/hide
Query:  RVHWTNKDSWNWLVNMLSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQQNDGYLPRGRENLNMLGVRWSAPP
        R +WT K+ W WL++   +EE   SM+IA QIWE RN+SIF+G   + + +  +I  +I ++  + T     +R  ++   + R  +N      RW  P 
Subjt:  RVHWTNKDSWNWLVNMLSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQQNDGYLPRGRENLNMLGVRWSAPP

Query:  TNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSRSPIYLESDSVEVIRLMKK
        +N WKLNTDA+W  +    GIGWIL D +GE++  G   IR ++ I  LE+M I  GL+ I  +   PI+LESDS+E I L+ +
Subjt:  TNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSRSPIYLESDSVEVIRLMKK

A0A6J1DSV1 uncharacterized protein LOC1110236087.7e-2440Show/hide
Query:  DEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQQNDGYLPRGRENLNMLGVRWSAPPTNCWKLNTDASWSEEREV
        +EE   SM+IAWQIWE RN+SIF+G   + + +   I  +I ++  + T +    +S   D +L R R   N  G RW  P +N WKLNTDA+W  +   
Subjt:  DEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQQNDGYLPRGRENLNMLGVRWSAPPTNCWKLNTDASWSEEREV

Query:  GGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQF--------INMQSRSPIYLESDSVEVIRLMKKEDVDLT
        GGIGWIL D +GE++ A    IR ++ I  LE+M I  GL+         I  +   PI+LESDS+E I L+ ++  D T
Subjt:  GGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQF--------INMQSRSPIYLESDSVEVIRLMKKEDVDLT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G02650.1 Ribonuclease H-like superfamily protein5.8e-0822.58Show/hide
Query:  IAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQQNDGYLPRGRENLNMLGVRWSAPPTNCWKLNTDASWSEEREVGGIGWILCD
        I W++W+SRN  +F+ +        R  +      ++       T      +      R++      +W+ PP    K N D+ +++       GW + +
Subjt:  IAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQQNDGYLPRGRENLNMLGVRWSAPPTNCWKLNTDASWSEEREVGGIGWILCD

Query:  CRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSRSPIYLESDSVEVIRLM
        C G IVL GN K++        E +  +  LQ I       ++ ESDS  ++ L+
Subjt:  CRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSRSPIYLESDSVEVIRLM

AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.8e-1227.67Show/hide
Query:  IAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQQNDGYLPRGRENLNMLGVRWSAPPTNCWKLNTDASWSEEREVGGIGWILCD
        + W++W+SRN  +F+G+  D  ++ R  +     + ++ +    TRR  +     P+   NL+   V+W APP    K NTDA+W  E    GIGWIL +
Subjt:  IAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQQNDGYLPRGRENLNMLGVRWSAPPTNCWKLNTDASWSEEREVGGIGWILCD

Query:  CRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSRSPIYLESDSVEVIRLMKKED
          G ++  G   +   K +   EL  +   +  ++  +   I  ESD+  ++ L+  +D
Subjt:  CRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSRSPIYLESDSVEVIRLMKKED

AT4G29090.1 Ribonuclease H-like superfamily protein6.7e-1225.41Show/hide
Query:  WLVNMLSDE---EVATSMV--IAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQQNDGYLPRGRENLNMLGVRWSAPPTNCWKL
        W+ N+ +     E A+ +V  + W++W++RN  +FRG   + Q++ R        ++++     + R   ++ G  P  + N +  G RW  PP    K 
Subjt:  WLVNMLSDE---EVATSMV--IAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQQNDGYLPRGRENLNMLGVRWSAPPTNCWKL

Query:  NTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSRSPIYLESDSVEVIRLMKKEDV
        NTDA+W+ + E  GIGW+L + +GE+   G   + + K +   EL  +   +  ++    + +  ESDS  +I ++  +++
Subjt:  NTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSRSPIYLESDSVEVIRLMKKEDV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGAGCACTTTTATGGGAATGTAAGGGTTCATTGGACGAACAAGGACAGTTGGAACTGGTTGGTGAACATGCTTTCAGATGAAGAGGTGGCTACCAGCATGGTTAT
TGCTTGGCAGATATGGGAAAGCAGAAACAGAAGCATCTTTAGAGGAGAAACAATTGATGAACAACAACTAGACCGATCAATAGTCTTGTTCATAAATTCCAACATAGATA
AAGGCACATGCATATCCCAAACGAGAAGGAGCCAACAAAATGATGGGTACCTGCCACGAGGAAGGGAGAATCTCAACATGCTTGGCGTTCGGTGGAGTGCTCCCCCTACC
AATTGCTGGAAACTCAATACAGATGCATCGTGGAGTGAGGAGCGCGAAGTAGGTGGCATAGGGTGGATTCTTTGTGACTGTAGGGGGGAGATTGTTTTGGCTGGAAACTG
CAAAATCAGGGAGAAGAAGGAAATCAACGCCCTAGAACTAATGACGATAATTCGAGGACTCCAATTCATCAACATGCAAAGTAGAAGTCCAATTTACCTTGAATCAGATT
CAGTCGAAGTAATTCGATTAATGAAGAAGGAGGACGTCGATCTAACATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGAGCACTTTTATGGGAATGTAAGGGTTCATTGGACGAACAAGGACAGTTGGAACTGGTTGGTGAACATGCTTTCAGATGAAGAGGTGGCTACCAGCATGGTTAT
TGCTTGGCAGATATGGGAAAGCAGAAACAGAAGCATCTTTAGAGGAGAAACAATTGATGAACAACAACTAGACCGATCAATAGTCTTGTTCATAAATTCCAACATAGATA
AAGGCACATGCATATCCCAAACGAGAAGGAGCCAACAAAATGATGGGTACCTGCCACGAGGAAGGGAGAATCTCAACATGCTTGGCGTTCGGTGGAGTGCTCCCCCTACC
AATTGCTGGAAACTCAATACAGATGCATCGTGGAGTGAGGAGCGCGAAGTAGGTGGCATAGGGTGGATTCTTTGTGACTGTAGGGGGGAGATTGTTTTGGCTGGAAACTG
CAAAATCAGGGAGAAGAAGGAAATCAACGCCCTAGAACTAATGACGATAATTCGAGGACTCCAATTCATCAACATGCAAAGTAGAAGTCCAATTTACCTTGAATCAGATT
CAGTCGAAGTAATTCGATTAATGAAGAAGGAGGACGTCGATCTAACATAA
Protein sequenceShow/hide protein sequence
MVEHFYGNVRVHWTNKDSWNWLVNMLSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQQNDGYLPRGRENLNMLGVRWSAPPT
NCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSRSPIYLESDSVEVIRLMKKEDVDLT