CuGenDBv2

Gene ID	Moc08g36770
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	CCHC-type domain-containing protein
Genome location	chr8:27331272..27332399
RNA-Seq Expression	Moc08g36770
Synteny	Moc08g36770
Gene Ontology terms	GO:0009987 - cellular process (biological process) GO:0110165 - cellular anatomical structure (cellular component) GO:0005488 - binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7561662.1 Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa]

2.6e-30

42.77

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Query:  RVKDLLTCKKIHKTLGERPAGMVDKDWNEMDEQAVANIRMSLSMNVCSMVAKETTAKDLLNVLQDRYEKPSVNTKILLWTRYFNIHMEEGTSVNSHINEL
        +++D L  KK+H+ L  +P  M  ++W+ +D Q +  IR++LS NV   VAKE T + L+ VL D YEKPS N K+ L  + F++ MEEG  V +H+NE 
Subjt:  RVKDLLTCKKIHKTLGERPAGMVDKDWNEMDEQAVANIRMSLSMNVCSMVAKETTAKDLLNVLQDRYEKPSVNTKILLWTRYFNIHMEEGTSVNSHINEL

Query:  TDIFNTLERMGVKIDDEVKAMRLLTSLLDSWETMKTVVSNSLGKNSLKFTAICDVVLSKEARR-KLGKMSAST
          I N L  + ++ DDEV+A+ L+ SL +SWE M+  VSNS+G   LKF  + D +L +E RR   G+ S S+
Subjt:  TDIFNTLERMGVKIDDEVKAMRLLTSLLDSWETMKTVVSNSLGKNSLKFTAICDVVLSKEARR-KLGKMSAST

KAG7584790.1 Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa]

1.5e-30

44.17

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Query:  RVKDLLTCKKIHKTLGERPAGMVDKDWNEMDEQAVANIRMSLSMNVCSMVAKETTAKDLLNVLQDRYEKPSVNTKILLWTRYFNIHMEEGTSVNSHINEL
        +++D L  KK+H+ L  +P  M  ++W+ +D Q +  IR++LS NV   VAKE T + L+ VL D YEKPS N K+ L  + F++ MEEG  V +H+NE 
Subjt:  RVKDLLTCKKIHKTLGERPAGMVDKDWNEMDEQAVANIRMSLSMNVCSMVAKETTAKDLLNVLQDRYEKPSVNTKILLWTRYFNIHMEEGTSVNSHINEL

Query:  TDIFNTLERMGVKIDDEVKAMRLLTSLLDSWETMKTVVSNSLGKNSLKFTAICDVVLSKEARR
          I N L  + ++ DDEV+A+ LL SL +SWE M+  VSNS+G   LKF  + D +L +E RR
Subjt:  TDIFNTLERMGVKIDDEVKAMRLLTSLLDSWETMKTVVSNSLGKNSLKFTAICDVVLSKEARR

KAG7593230.1 Pentatricopeptide repeat [Arabidopsis thaliana x Arabidopsis arenosa]

1.5e-30

43.35

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Query:  RVKDLLTCKKIHKTLGERPAGMVDKDWNEMDEQAVANIRMSLSMNVCSMVAKETTAKDLLNVLQDRYEKPSVNTKILLWTRYFNIHMEEGTSVNSHINEL
        +++D L  KK+H+ L  +P  M  ++W+ +D Q +  IR++LS NV   VAKE T + L+ VL D YEKPS N K+ L  + F++ MEEG  V +H+NE 
Subjt:  RVKDLLTCKKIHKTLGERPAGMVDKDWNEMDEQAVANIRMSLSMNVCSMVAKETTAKDLLNVLQDRYEKPSVNTKILLWTRYFNIHMEEGTSVNSHINEL

Query:  TDIFNTLERMGVKIDDEVKAMRLLTSLLDSWETMKTVVSNSLGKNSLKFTAICDVVLSKEARR-KLGKMSAST
          I N L  + ++ DDEV+A+ LL SL +SWE M+  VSNS+G   LKF  + D +L +E RR   G+ S S+
Subjt:  TDIFNTLERMGVKIDDEVKAMRLLTSLLDSWETMKTVVSNSLGKNSLKFTAICDVVLSKEARR-KLGKMSAST

KYP53137.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]

2.9e-29

44.25

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Query:  RVKDLLTCKKIHKTL-GERPAGMVDKDWNEMDEQAVANIRMSLSMNVCSMVAKETTAKDLLNVLQDRYEKPSVNTKILLWTRYFNIHMEEGTSVNSHINE
        +++D L  KK+H+ L G++P GM D +W  +D QA+  IR++LS NV   +AKE T   L+  L   YEKPS + K+ L  R FN+ M EG SV  H+NE
Subjt:  RVKDLLTCKKIHKTL-GERPAGMVDKDWNEMDEQAVANIRMSLSMNVCSMVAKETTAKDLLNVLQDRYEKPSVNTKILLWTRYFNIHMEEGTSVNSHINE

Query:  LTDIFNTLERMGVKIDDEVKAMRLLTSLLDSWETMKTVVSNSLGKNSLKFTAICDVVLSKEARRK-LGKMSAST
        L+ +   L  +G++ DDEV+A+ LL+SL +SW    T VS+S G N LK   + D+VLS+E RR+  G+ S S+
Subjt:  LTDIFNTLERMGVKIDDEVKAMRLLTSLLDSWETMKTVVSNSLGKNSLKFTAICDVVLSKEARRK-LGKMSAST

VDD56318.1 unnamed protein product [Brassica oleracea]

6.5e-29

42.33

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Query:  RVKDLLTCKKIHKTLGERPAGMVDKDWNEMDEQAVANIRMSLSMNVCSMVAKETTAKDLLNVLQDRYEKPSVNTKILLWTRYFNIHMEEGTSVNSHINEL
        +++D L  KK+H+ L ++P  +   +W  +D Q +  IR++LS NV   VAKE T + L+ VL D YEKPS N K+ L  + F++ MEEG  V +H+NE 
Subjt:  RVKDLLTCKKIHKTLGERPAGMVDKDWNEMDEQAVANIRMSLSMNVCSMVAKETTAKDLLNVLQDRYEKPSVNTKILLWTRYFNIHMEEGTSVNSHINEL

Query:  TDIFNTLERMGVKIDDEVKAMRLLTSLLDSWETMKTVVSNSLGKNSLKFTAICDVVLSKEARR
          I N L  + ++ +DEV+A+ LL SL +SWE M+  VSN +G   LKF  + D +L++E RR
Subjt:  TDIFNTLERMGVKIDDEVKAMRLLTSLLDSWETMKTVVSNSLGKNSLKFTAICDVVLSKEARR

TrEMBL top hits

e value

%identity

Alignment

A0A0D3AEM1 CCHC-type domain-containing protein

3.7e-30

43.56

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Query:  RVKDLLTCKKIHKTLGERPAGMVDKDWNEMDEQAVANIRMSLSMNVCSMVAKETTAKDLLNVLQDRYEKPSVNTKILLWTRYFNIHMEEGTSVNSHINEL
        +++D L  KK+H+ L ++P  M   +W  +D Q +  IR++LS NV   V KE T + L+ VL D YEKPS N+K+ L  + F++ MEEG  V +HINE 
Subjt:  RVKDLLTCKKIHKTLGERPAGMVDKDWNEMDEQAVANIRMSLSMNVCSMVAKETTAKDLLNVLQDRYEKPSVNTKILLWTRYFNIHMEEGTSVNSHINEL

Query:  TDIFNTLERMGVKIDDEVKAMRLLTSLLDSWETMKTVVSNSLGKNSLKFTAICDVVLSKEARR
          I N L  + ++ +DEV+A+ LL SL +SWE+M+  VSNS+G   LKF  + D +L++E RR
Subjt:  TDIFNTLERMGVKIDDEVKAMRLLTSLLDSWETMKTVVSNSLGKNSLKFTAICDVVLSKEARR

A0A0D3BM55 Uncharacterized protein

7.5e-31

44.79

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Query:  RVKDLLTCKKIHKTLGERPAGMVDKDWNEMDEQAVANIRMSLSMNVCSMVAKETTAKDLLNVLQDRYEKPSVNTKILLWTRYFNIHMEEGTSVNSHINEL
        +++D L  KK+H+TL ++P  M   +W  +D Q +  IR++LS NV   VAKE T + L+ VL D YEKPS N K+ L  + F++ MEEG  V +H+NE 
Subjt:  RVKDLLTCKKIHKTLGERPAGMVDKDWNEMDEQAVANIRMSLSMNVCSMVAKETTAKDLLNVLQDRYEKPSVNTKILLWTRYFNIHMEEGTSVNSHINEL

Query:  TDIFNTLERMGVKIDDEVKAMRLLTSLLDSWETMKTVVSNSLGKNSLKFTAICDVVLSKEARR
          I N L  + ++ DDEV+A+ LL SL +SWE M+  VSNS+G   LKF  + D +L++E RR
Subjt:  TDIFNTLERMGVKIDDEVKAMRLLTSLLDSWETMKTVVSNSLGKNSLKFTAICDVVLSKEARR

A0A0D3DMW7 CCHC-type domain-containing protein

2.8e-30

43.56

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Query:  RVKDLLTCKKIHKTLGERPAGMVDKDWNEMDEQAVANIRMSLSMNVCSMVAKETTAKDLLNVLQDRYEKPSVNTKILLWTRYFNIHMEEGTSVNSHINEL
        +++D L  KK+H+ L ++P  M   +W  +D Q +  IR++LS NV   +AKE T + L+ VL D YEKPSVN K+ L  + F++ MEEG  V +H+NE 
Subjt:  RVKDLLTCKKIHKTLGERPAGMVDKDWNEMDEQAVANIRMSLSMNVCSMVAKETTAKDLLNVLQDRYEKPSVNTKILLWTRYFNIHMEEGTSVNSHINEL

Query:  TDIFNTLERMGVKIDDEVKAMRLLTSLLDSWETMKTVVSNSLGKNSLKFTAICDVVLSKEARR
          I N L  + ++ DDEV+A+ LL SL +SWE M+  V+NS+G   LKF  + D +L++E RR
Subjt:  TDIFNTLERMGVKIDDEVKAMRLLTSLLDSWETMKTVVSNSLGKNSLKFTAICDVVLSKEARR

A0A151SEB7 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.4e-29

44.25

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Query:  RVKDLLTCKKIHKTL-GERPAGMVDKDWNEMDEQAVANIRMSLSMNVCSMVAKETTAKDLLNVLQDRYEKPSVNTKILLWTRYFNIHMEEGTSVNSHINE
        +++D L  KK+H+ L G++P GM D +W  +D QA+  IR++LS NV   +AKE T   L+  L   YEKPS + K+ L  R FN+ M EG SV  H+NE
Subjt:  RVKDLLTCKKIHKTL-GERPAGMVDKDWNEMDEQAVANIRMSLSMNVCSMVAKETTAKDLLNVLQDRYEKPSVNTKILLWTRYFNIHMEEGTSVNSHINE

Query:  LTDIFNTLERMGVKIDDEVKAMRLLTSLLDSWETMKTVVSNSLGKNSLKFTAICDVVLSKEARRK-LGKMSAST
        L+ +   L  +G++ DDEV+A+ LL+SL +SW    T VS+S G N LK   + D+VLS+E RR+  G+ S S+
Subjt:  LTDIFNTLERMGVKIDDEVKAMRLLTSLLDSWETMKTVVSNSLGKNSLKFTAICDVVLSKEARRK-LGKMSAST

A0A3P6FTI2 Abhydrolase_3 domain-containing protein

3.1e-29

42.33

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Query:  RVKDLLTCKKIHKTLGERPAGMVDKDWNEMDEQAVANIRMSLSMNVCSMVAKETTAKDLLNVLQDRYEKPSVNTKILLWTRYFNIHMEEGTSVNSHINEL
        +++D L  KK+H+ L ++P  +   +W  +D Q +  IR++LS NV   VAKE T + L+ VL D YEKPS N K+ L  + F++ MEEG  V +H+NE 
Subjt:  RVKDLLTCKKIHKTLGERPAGMVDKDWNEMDEQAVANIRMSLSMNVCSMVAKETTAKDLLNVLQDRYEKPSVNTKILLWTRYFNIHMEEGTSVNSHINEL

Query:  TDIFNTLERMGVKIDDEVKAMRLLTSLLDSWETMKTVVSNSLGKNSLKFTAICDVVLSKEARR
          I N L  + ++ +DEV+A+ LL SL +SWE M+  VSN +G   LKF  + D +L++E RR
Subjt:  TDIFNTLERMGVKIDDEVKAMRLLTSLLDSWETMKTVVSNSLGKNSLKFTAICDVVLSKEARR

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

1.4e-05

23.03

Show/hide

Query:  FRVKDLLTCKKIHKTLGERPAGMVDKDWNEMDEQAVANIRMSLSMNVCSMVAKETTAKDLLNVLQDRYEKPSVNTKILLWTRYFNIHMEEGTSVNSHINE
        FR++ LL  + + K +       VD  W + +  A + I   LS +  +    + TA+ +L  L   YE+ S+ +++ L  R  ++ +    S+ SH + 
Subjt:  FRVKDLLTCKKIHKTLGERPAGMVDKDWNEMDEQAVANIRMSLSMNVCSMVAKETTAKDLLNVLQDRYEKPSVNTKILLWTRYFNIHMEEGTSVNSHINE

Query:  LTDIFNTLERMGVKIDDEVKAMRLLTSLLDSWETMKTVVSNSLGKNSLKFTAICDVVLSKEARRK
          ++ + L   G KI++  K   LL +L   ++ + T +  +L + +L    + + +L +E + K
Subjt:  LTDIFNTLERMGVKIDDEVKAMRLLTSLLDSWETMKTVVSNSLGKNSLKFTAICDVVLSKEARRK

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.4e-18

32.34

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Query:  RVKDLLTCKKIHKTL---GERPAGMVDKDWNEMDEQAVANIRMSLSMNVCSMVAKETTAKDLLNVLQDRYEKPSVNTKILLWTRYFNIHMEEGTSVNSHI
        R++DLL  + +HK L    ++P  M  +DW ++DE+A + IR+ LS +V + +  E TA+ +   L+  Y   ++  K+ L  + + +HM EGT+  SH+
Subjt:  RVKDLLTCKKIHKTL---GERPAGMVDKDWNEMDEQAVANIRMSLSMNVCSMVAKETTAKDLLNVLQDRYEKPSVNTKILLWTRYFNIHMEEGTSVNSHI

Query:  NELTDIFNTLERMGVKIDDEVKAMRLLTSLLDSWETMKTVVSNSLGKNSLKFTAICDVVLSKEARRK
        N    +   L  +GVKI++E KA+ LL SL  S++ + T + +  GK +++   +   +L  E  RK
Subjt:  NELTDIFNTLERMGVKIDDEVKAMRLLTSLLDSWETMKTVVSNSLGKNSLKFTAICDVVLSKEARRK

Arabidopsis top hits

e value

%identity

Alignment

AT3G29785.1 unknown protein

1.6e-09

37.66

Show/hide

Query:  RVKDLLTCKKIHKTLGERPAGMVDKDWNEMDEQAVANIRMSLSMNVCSMVAKETTAKDLLNVLQDRYEKPSVNTKIL
        +++D L  KK+H+ LG++   M   DWN +  Q +  IR+++S N+   VAKE +   L+ VL D Y+KPS N  ++
Subjt:  RVKDLLTCKKIHKTLGERPAGMVDKDWNEMDEQAVANIRMSLSMNVCSMVAKETTAKDLLNVLQDRYEKPSVNTKIL

Sequences

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CDS sequence

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ATGGCGCTGTTTCGATGTCTATATAATTGCAGTTTCGGGTTTATAGTTTTCCAATCGAAAAAGGGTTATTGTCCAGTCGATTTTGAGCCGTTTTTCAGAGGGTTTCGTGG
CAATTTCAAGGGAGAGGCTCGGGCATTGGCAGAGGTATTGAAGCTCATTAAGATCAATACATTCAGGGTAAAGGATCTTCTTACATGCAAGAAGATACACAAGACTTTAG
GGGAGAGACCAGCAGGGATGGTGGACAAGGATTGGAATGAGATGGATGAGCAGGCTGTTGCGAACATCAGAATGTCGTTGTCTATGAATGTTTGTAGTATGGTGGCGAAA
GAGACTACAGCGAAAGATTTGTTGAATGTCTTGCAAGACAGGTATGAAAAACCTTCTGTCAATACAAAGATACTCCTATGGACGAGGTATTTTAATATCCACATGGAGGA
GGGAACTTCGGTGAATTCTCACATTAATGAACTCACTGATATCTTCAACACGTTAGAAAGGATGGGTGTCAAGATTGACGATGAGGTGAAAGCTATGAGGCTGTTGACGT
CTTTGCTTGACAGTTGGGAGACGATGAAGACCGTAGTGTCGAATTCGCTAGGGAAAAATAGCTTGAAATTTACAGCTATTTGTGATGTCGTCTTATCTAAGGAAGCCCGG
AGAAAATTAGGAAAAATGTCTGCATCTACTTGA

mRNA sequence

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Protein sequence

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MALFRCLYNCSFGFIVFQSKKGYCPVDFEPFFRGFRGNFKGEARALAEVLKLIKINTFRVKDLLTCKKIHKTLGERPAGMVDKDWNEMDEQAVANIRMSLSMNVCSMVAK
ETTAKDLLNVLQDRYEKPSVNTKILLWTRYFNIHMEEGTSVNSHINELTDIFNTLERMGVKIDDEVKAMRLLTSLLDSWETMKTVVSNSLGKNSLKFTAICDVVLSKEAR
RKLGKMSAST

Moc08g36770 (gene) of Bitter gourd (OHB3-1) v2 genome