; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc08g37200 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g37200
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionbiogenesis of lysosome-related organelles complex 1 subunit 2
Genome locationchr8:27690324..27692367
RNA-Seq ExpressionMoc08g37200
SyntenyMoc08g37200
Gene Ontology termsNA
InterPro domainsIPR019269 - Biogenesis of lysosome-related organelles complex-1, subunit 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022155027.1 biogenesis of lysosome-related organelles complex 1 subunit 2 isoform X1 [Momordica charantia]1.5e-40100Show/hide
Query:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ
        MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ
Subjt:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ

XP_022155028.1 biogenesis of lysosome-related organelles complex 1 subunit 2 isoform X2 [Momordica charantia]1.5e-51100Show/hide
Query:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQGESRPDCAF
        MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQGESRPDCAF
Subjt:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQGESRPDCAF

Query:  TMEQISKDK
        TMEQISKDK
Subjt:  TMEQISKDK

XP_022155029.1 biogenesis of lysosome-related organelles complex 1 subunit 2 isoform X3 [Momordica charantia]2.2e-60100Show/hide
Query:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQGESRPDCAF
        MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQGESRPDCAF
Subjt:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQGESRPDCAF

Query:  TMEQISKDKARCLSDRAQVWITQ
        TMEQISKDKARCLSDRAQVWITQ
Subjt:  TMEQISKDKARCLSDRAQVWITQ

XP_022155030.1 biogenesis of lysosome-related organelles complex 1 subunit 2 isoform X4 [Momordica charantia]1.5e-51100Show/hide
Query:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQGESRPDCAF
        MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQGESRPDCAF
Subjt:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQGESRPDCAF

Query:  TMEQISKDK
        TMEQISKDK
Subjt:  TMEQISKDK

XP_038880795.1 biogenesis of lysosome-related organelles complex 1 subunit 2 [Benincasa hispida]1.5e-3591.21Show/hide
Query:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ
        MA KEEQ PNRDELA SLNEFFTSVS+MIKSDLLGSSNQLALLE+MNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFD YI QIE IEHQ
Subjt:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ

TrEMBL top hitse value%identityAlignment
A0A0A0KW18 Uncharacterized protein1.6e-3589.01Show/hide
Query:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ
        MA KEE+LPNRD+LA SLNEFFTSVS+MIKSDLLGSSNQL LLE+MNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFD YI+QIE IEHQ
Subjt:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ

A0A6J1DL99 biogenesis of lysosome-related organelles complex 1 subunit 2 isoform X47.0e-52100Show/hide
Query:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQGESRPDCAF
        MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQGESRPDCAF
Subjt:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQGESRPDCAF

Query:  TMEQISKDK
        TMEQISKDK
Subjt:  TMEQISKDK

A0A6J1DLV8 biogenesis of lysosome-related organelles complex 1 subunit 2 isoform X27.0e-52100Show/hide
Query:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQGESRPDCAF
        MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQGESRPDCAF
Subjt:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQGESRPDCAF

Query:  TMEQISKDK
        TMEQISKDK
Subjt:  TMEQISKDK

A0A6J1DN97 biogenesis of lysosome-related organelles complex 1 subunit 2 isoform X17.3e-41100Show/hide
Query:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ
        MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ
Subjt:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ

A0A6J1DP01 biogenesis of lysosome-related organelles complex 1 subunit 2 isoform X31.1e-60100Show/hide
Query:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQGESRPDCAF
        MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQGESRPDCAF
Subjt:  MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQGESRPDCAF

Query:  TMEQISKDKARCLSDRAQVWITQ
        TMEQISKDKARCLSDRAQVWITQ
Subjt:  TMEQISKDKARCLSDRAQVWITQ

SwissProt top hitse value%identityAlignment
F4K657 Biogenesis of lysosome-related organelles complex 1 subunit 21.6e-2162.2Show/hide
Query:  NRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ
        +RD+LA SL   FTSVS M+KS+L G++N L LLEKMNLRVA EY   GDVA+G+RVF EQ+KSKSGG D ++ Q++ IE Q
Subjt:  NRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ

Q54Y67 Biogenesis of lysosome-related organelles complex 1 subunit 28.1e-0534.15Show/hide
Query:  LPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIE
        LP  ++L  S  E FT VS  IKS+L  + +   LL +MN   + +Y+   +V  G+ VF+  LK K   F  Y  +I  ++
Subjt:  LPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIE

Arabidopsis top hitse value%identityAlignment
AT5G49550.1 Putative homolog of mammalian BLOC-1 Subunit 2. Protein - protein interaction with BLOS1.1.2e-2262.2Show/hide
Query:  NRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ
        +RD+LA SL   FTSVS M+KS+L G++N L LLEKMNLRVA EY   GDVA+G+RVF EQ+KSKSGG D ++ Q++ IE Q
Subjt:  NRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGGGAAAGAGGAACAATTGCCCAACAGGGACGAGCTCGCCGTCTCGCTCAACGAATTCTTCACCAGCGTATCCCAAATGATCAAATCGGACCTTCTTGGATCAAG
TAATCAGCTGGCACTTTTGGAGAAAATGAATCTCAGGGTGGCAGAAGAGTATAAAGGTTTTGGGGACGTGGCTTCTGGAATGAGGGTTTTCGTGGAGCAACTGAAGTCGA
AGAGTGGTGGCTTTGATGCTTATATTAGCCAGATTGAGAATATAGAACATCAGGGAGAGTCGAGGCCCGACTGCGCATTCACGATGGAGCAAATCTCAAAGGATAAAGCA
CGCTGTTTATCCGATAGAGCTCAAGTATGGATCACACAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGGGAAAGAGGAACAATTGCCCAACAGGGACGAGCTCGCCGTCTCGCTCAACGAATTCTTCACCAGCGTATCCCAAATGATCAAATCGGACCTTCTTGGATCAAG
TAATCAGCTGGCACTTTTGGAGAAAATGAATCTCAGGGTGGCAGAAGAGTATAAAGGTTTTGGGGACGTGGCTTCTGGAATGAGGGTTTTCGTGGAGCAACTGAAGTCGA
AGAGTGGTGGCTTTGATGCTTATATTAGCCAGATTGAGAATATAGAACATCAGGGAGAGTCGAGGCCCGACTGCGCATTCACGATGGAGCAAATCTCAAAGGATAAAGCA
CGCTGTTTATCCGATAGAGCTCAAGTATGGATCACACAATGA
Protein sequenceShow/hide protein sequence
MAGKEEQLPNRDELAVSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQGESRPDCAFTMEQISKDKA
RCLSDRAQVWITQ