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Moc08g37380 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g37380
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNase H domain-containing protein
Genome locationchr8:27822947..27823420
RNA-Seq ExpressionMoc08g37380
SyntenyMoc08g37380
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]3.1e-3086.36Show/hide
Query:  MKVNSYAAYRSTSTGLGLIIIDHLGVLLIAKSVFLSIPLNPLFAEIRGILEALKLAASRSYTRLVVEFDCQEAIRLVQEDLFTMGEEM
        MKVNS AA RSTSTGLGLII DH GVLL+AKS+FL +PLNPLFAEIRGILEALKLAASRSYTRLVVE DCQEAIRLVQ DLF+MGEE+
Subjt:  MKVNSYAAYRSTSTGLGLIIIDHLGVLLIAKSVFLSIPLNPLFAEIRGILEALKLAASRSYTRLVVEFDCQEAIRLVQEDLFTMGEEM

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]3.4e-2948.73Show/hide
Query:  MKVNSYAAYRSTSTGLGLIIIDHLGVLLIAKSVFLSIPLNPLFAEIRGILEALKLAASRSYTRLVVEFDCQEAIRLVQEDLFTMGEEMNWIMEIRSIALA
        +K+N+ AA R  ST  G II D    L+ A S+ +  PL+PL AEIR ILE LK AA+ ++T L VE D   AI+L++ ++ T G+E NW+MEI+++   
Subjt:  MKVNSYAAYRSTSTGLGLIIIDHLGVLLIAKSVFLSIPLNPLFAEIRGILEALKLAASRSYTRLVVEFDCQEAIRLVQEDLFTMGEEMNWIMEIRSIALA

Query:  FESISFMHSPRSCNFCAHSLAKWAI-SASSSCLWQFPFPSWLMDLVKGDSLSTVALVA
        F  ISF HS R CN  AH LAKW I S S++  W F FP+WL+DLV+ D  S  A VA
Subjt:  FESISFMHSPRSCNFCAHSLAKWAI-SASSSCLWQFPFPSWLMDLVKGDSLSTVALVA

XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]1.4e-1132.48Show/hide
Query:  MKVNSYAAYRSTSTGLGLIIIDHLGVLLIAKSVFLSIPLNPLFAEIRGILEALKLAASRSYTRLVVEFDCQEAIRLVQEDLFTMGEEMNWIMEIRSIALA
        +K+N+ AA     +G+G+++ +     ++   V   +   PL A+I  I E L LA      R+VVE D  EA+ L+ +     GE ++W+ +IR+ A  
Subjt:  MKVNSYAAYRSTSTGLGLIIIDHLGVLLIAKSVFLSIPLNPLFAEIRGILEALKLAASRSYTRLVVEFDCQEAIRLVQEDLFTMGEEMNWIMEIRSIALA

Query:  FESISFMHSPRSCNFCAHSLAKWAISASSSCLWQFPFPSWLMDLVKGDSLSTVALVA
        F+ I F H  R  N  A+ L +  IS     LW+  FP WL  L +    ++VAL+A
Subjt:  FESISFMHSPRSCNFCAHSLAKWAISASSSCLWQFPFPSWLMDLVKGDSLSTVALVA

XP_024950112.1 uncharacterized protein LOC112496847 [Citrus sinensis]1.3e-0933.33Show/hide
Query:  KVNSYAAYRS--TSTGLGLIIIDHLGVLLIAKSVFLSIPLNPLFAEIRGILEALKLAASRSYTRLVVEFDCQEAIRLVQEDLFTMGEEMNWIMEIRSIAL
        KVN  AA+ S   S G+G +I D  G ++ A      +  +   AE   +L  L+LA +   + L++E DC E ++LV     +  E    I+ I++   
Subjt:  KVNSYAAYRS--TSTGLGLIIIDHLGVLLIAKSVFLSIPLNPLFAEIRGILEALKLAASRSYTRLVVEFDCQEAIRLVQEDLFTMGEEMNWIMEIRSIAL

Query:  AFESISFMHSPRSCNFCAHSLAKWAISASSSCLWQFPFPSWLMDLVK
         F+ +   H PR CN CAH LAK A+   S C+W    P+ L D +K
Subjt:  AFESISFMHSPRSCNFCAHSLAKWAISASSSCLWQFPFPSWLMDLVK

XP_038722072.1 uncharacterized protein LOC120014227 [Tripterygium wilfordii]1.3e-0932Show/hide
Query:  MKVNSYAAYRSTSTGLGLIIIDHLGVLLIAKSVFLSIPLNPLFAEIRGILEALKLAASRSYTRLVVEFDCQEAIRLVQEDLFTMGEEMNWIMEIRSIALA
        +K+N  AA R +  G+G+I  D  G  + +K++ +  PLNPLFAE     EAL  A S +Y  +V+E D    I+ ++ +   + E    +   +++  +
Subjt:  MKVNSYAAYRSTSTGLGLIIIDHLGVLLIAKSVFLSIPLNPLFAEIRGILEALKLAASRSYTRLVVEFDCQEAIRLVQEDLFTMGEEMNWIMEIRSIALA

Query:  FESISFMHSPRSCNFCAHSLAKWAISASSSCLWQFPFPSWLMDLVKGDSL
           +SF H  RS N+ A +LAK+A+S   S  W    P++L  +++ D L
Subjt:  FESISFMHSPRSCNFCAHSLAKWAISASSSCLWQFPFPSWLMDLVKGDSL

TrEMBL top hitse value%identityAlignment
A0A0J8BAU9 Uncharacterized protein1.6e-0831.79Show/hide
Query:  MKVNSYAAYRS--TSTGLGLIIIDHLGVLLIAKSVFLSIPLNPLFAEIRGILEALKLAASRSYTRLVVEFDCQEAIRLVQEDLFTMGEEMNWIMEIRSIA
        +K+N  AA        GLG++  D  G +L A S  +S       AE   +L A + A ++ ++ +V+E D Q  I  +   L   G+    + ++ ++ 
Subjt:  MKVNSYAAYRS--TSTGLGLIIIDHLGVLLIAKSVFLSIPLNPLFAEIRGILEALKLAASRSYTRLVVEFDCQEAIRLVQEDLFTMGEEMNWIMEIRSIA

Query:  LAFESISFMHSPRSCNFCAHSLAKWAISASSSCLWQFPFPSWLMDLVKGDS
         +FE+I F    R CN  AH LAKWA S     +W    PSW+ DL+  DS
Subjt:  LAFESISFMHSPRSCNFCAHSLAKWAISASSSCLWQFPFPSWLMDLVKGDS

A0A6J1BQ49 uncharacterized protein LOC1110047861.5e-3086.36Show/hide
Query:  MKVNSYAAYRSTSTGLGLIIIDHLGVLLIAKSVFLSIPLNPLFAEIRGILEALKLAASRSYTRLVVEFDCQEAIRLVQEDLFTMGEEM
        MKVNS AA RSTSTGLGLII DH GVLL+AKS+FL +PLNPLFAEIRGILEALKLAASRSYTRLVVE DCQEAIRLVQ DLF+MGEE+
Subjt:  MKVNSYAAYRSTSTGLGLIIIDHLGVLLIAKSVFLSIPLNPLFAEIRGILEALKLAASRSYTRLVVEFDCQEAIRLVQEDLFTMGEEM

A0A6J1DX30 uncharacterized protein LOC1110248741.6e-2948.73Show/hide
Query:  MKVNSYAAYRSTSTGLGLIIIDHLGVLLIAKSVFLSIPLNPLFAEIRGILEALKLAASRSYTRLVVEFDCQEAIRLVQEDLFTMGEEMNWIMEIRSIALA
        +K+N+ AA R  ST  G II D    L+ A S+ +  PL+PL AEIR ILE LK AA+ ++T L VE D   AI+L++ ++ T G+E NW+MEI+++   
Subjt:  MKVNSYAAYRSTSTGLGLIIIDHLGVLLIAKSVFLSIPLNPLFAEIRGILEALKLAASRSYTRLVVEFDCQEAIRLVQEDLFTMGEEMNWIMEIRSIALA

Query:  FESISFMHSPRSCNFCAHSLAKWAI-SASSSCLWQFPFPSWLMDLVKGDSLSTVALVA
        F  ISF HS R CN  AH LAKW I S S++  W F FP+WL+DLV+ D  S  A VA
Subjt:  FESISFMHSPRSCNFCAHSLAKWAI-SASSSCLWQFPFPSWLMDLVKGDSLSTVALVA

A0A6J1DZK3 uncharacterized protein LOC1110249686.9e-1232.48Show/hide
Query:  MKVNSYAAYRSTSTGLGLIIIDHLGVLLIAKSVFLSIPLNPLFAEIRGILEALKLAASRSYTRLVVEFDCQEAIRLVQEDLFTMGEEMNWIMEIRSIALA
        +K+N+ AA     +G+G+++ +     ++   V   +   PL A+I  I E L LA      R+VVE D  EA+ L+ +     GE ++W+ +IR+ A  
Subjt:  MKVNSYAAYRSTSTGLGLIIIDHLGVLLIAKSVFLSIPLNPLFAEIRGILEALKLAASRSYTRLVVEFDCQEAIRLVQEDLFTMGEEMNWIMEIRSIALA

Query:  FESISFMHSPRSCNFCAHSLAKWAISASSSCLWQFPFPSWLMDLVKGDSLSTVALVA
        F+ I F H  R  N  A+ L +  IS     LW+  FP WL  L +    ++VAL+A
Subjt:  FESISFMHSPRSCNFCAHSLAKWAISASSSCLWQFPFPSWLMDLVKGDSLSTVALVA

A0A803Q1F8 Uncharacterized protein2.1e-0832.84Show/hide
Query:  GLGLIIIDHLGVLLIAKSVFLSIPLNPLFAEIRGILEALKLAASRSYTRLVVEFDCQEAIRLVQEDLFTMGEEMNWIMEIRSIALAFESISFMHSPRSCN
        GLG+II DHLG L+ A++VF+   L+ L AE   I  ALK+A   S  ++ +  D Q  I+ +  +  +  +  + +++      +F+++SF+ SP++CN
Subjt:  GLGLIIIDHLGVLLIAKSVFLSIPLNPLFAEIRGILEALKLAASRSYTRLVVEFDCQEAIRLVQEDLFTMGEEMNWIMEIRSIALAFESISFMHSPRSCN

Query:  FCAHSLAKWAISASSSCLWQFPFPSWLMDLVKGD
          AH LAKW      S +W    P      +K D
Subjt:  FCAHSLAKWAISASSSCLWQFPFPSWLMDLVKGD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G04625.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.4e-0427.34Show/hide
Query:  KVNSYAAYRSTS-TGLGLIIIDHLGVLLIAKSVFLSIPLNPLFAEIRGILEALKLAASRSYTRLVVEFDCQEAIRLVQEDLFTMGEEMNWIMEIRSIALA
        K N    Y S + +  G ++ D  G  L A     SI  NP+ +E++ ++ A++   SR Y ++  E D +E   +V           NWI +I +    
Subjt:  KVNSYAAYRSTS-TGLGLIIIDHLGVLLIAKSVFLSIPLNPLFAEIRGILEALKLAASRSYTRLVVEFDCQEAIRLVQEDLFTMGEEMNWIMEIRSIALA

Query:  FESISFMHSPRSCNFCAHSLAKWAISASSS--CLWQFPF
        FE   F  + R  N  A +LAK  +  ++   C    PF
Subjt:  FESISFMHSPRSCNFCAHSLAKWAISASSS--CLWQFPF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGTGAACTCTTATGCAGCCTACCGTTCTACATCAACAGGGCTAGGTCTTATTATCATAGACCATTTGGGGGTTTTGTTGATAGCGAAATCAGTGTTTCTG
TCGATTCCATTGAACCCTCTTTTTGCCGAAATCAGAGGAATTTTGGAAGCTTTAAAACTCGCTGCCTCACGGAGTTACACTCGTCTGGTTGTAGAATTTGATTGC
CAAGAAGCCATTCGCCTCGTTCAAGAAGATCTGTTTACGATGGGAGAAGAAATGAATTGGATTATGGAAATTCGATCGATAGCCCTAGCTTTCGAATCAATTTCT
TTCATGCACTCCCCCCGTTCATGTAATTTTTGTGCGCATTCCTTAGCCAAATGGGCAATTTCGGCCTCATCCTCGTGTTTATGGCAGTTTCCCTTCCCCTCTTGG
TTAATGGATCTTGTAAAAGGGGATTCCCTTTCAACCGTTGCCCTAGTGGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGTGAACTCTTATGCAGCCTACCGTTCTACATCAACAGGGCTAGGTCTTATTATCATAGACCATTTGGGGGTTTTGTTGATAGCGAAATCAGTGTTTCTG
TCGATTCCATTGAACCCTCTTTTTGCCGAAATCAGAGGAATTTTGGAAGCTTTAAAACTCGCTGCCTCACGGAGTTACACTCGTCTGGTTGTAGAATTTGATTGC
CAAGAAGCCATTCGCCTCGTTCAAGAAGATCTGTTTACGATGGGAGAAGAAATGAATTGGATTATGGAAATTCGATCGATAGCCCTAGCTTTCGAATCAATTTCT
TTCATGCACTCCCCCCGTTCATGTAATTTTTGTGCGCATTCCTTAGCCAAATGGGCAATTTCGGCCTCATCCTCGTGTTTATGGCAGTTTCCCTTCCCCTCTTGG
TTAATGGATCTTGTAAAAGGGGATTCCCTTTCAACCGTTGCCCTAGTGGCTTAA
Protein sequenceShow/hide protein sequence
MKVNSYAAYRSTSTGLGLIIIDHLGVLLIAKSVFLSIPLNPLFAEIRGILEALKLAASRSYTRLVVEFDCQEAIRLVQEDLFTMGEEMNWIMEIRSIALAFESIS
FMHSPRSCNFCAHSLAKWAISASSSCLWQFPFPSWLMDLVKGDSLSTVALVA