CuGenDBv2

Gene ID	Moc08g38540
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr8:28915476..28917053
RNA-Seq Expression	Moc08g38540
Synteny	Moc08g38540
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

CAN81130.1 hypothetical protein VITISV_003944 [Vitis vinifera]

9.1e-52

36.79

Show/hide

Query:  MQVKDLLTYKKIH-KTLGKRPVGMMDNDWSEMDEQVVANIIMSLSMNVCSLVAKETIAKELLKALQDRYEKPSANTKLLLWTKYFNIHMEEGTSVNSHIN
        MQ++D L  +K+H   LG +P  M   +W+ +D QV+  I ++LS +V   V KE    +L+KAL   YEKPSAN K+ L TK FN+ M E  SV  H+N
Subjt:  MQVKDLLTYKKIH-KTLGKRPVGMMDNDWSEMDEQVVANIIMSLSMNVCSLVAKETIAKELLKALQDRYEKPSANTKLLLWTKYFNIHMEEGTSVNSHIN

Query:  ELTDILNKFEGMSVKIEEEVKAVRLLTSLLDSWETMKTAVSNSPGENSLKFSAICDVALSDEARRKLGKMSASTSGAESGVESALVAQNKGKGKMNYNGK
        E   I N+   + +  ++E++A+ +L SL +SWE M+ AVSNS G+  LK++ I D+ L++E RR+        +G  SG  SAL  + +G+G  N N  
Subjt:  ELTDILNKFEGMSVKIEEEVKAVRLLTSLLDSWETMKTAVSNSPGENSLKFSAICDVALSDEARRKLGKMSASTSGAESGVESALVAQNKGKGKMNYNGK

Query:  QQQRYSRGSG-----SSSG-EVECYYCYRKRHVKHFCRKFKEGCENGNNSTNVVTEEKQIEEFLACVQRNISVDKWIVDVAASAHVASDIRWFSSFTADE
        Q +  SR S      S SG +V+C+ C +  H K  C+  K+  +N ++S N VTEE Q    LA    +  +D W++D  AS H         ++ A +
Subjt:  QQQRYSRGSG-----SSSG-EVECYYCYRKRHVKHFCRKFKEGCENGNNSTNVVTEEKQIEEFLACVQRNISVDKWIVDVAASAHVASDIRWFSSFTADE

Query:  --------------------------GSELLLRGVRYIPSFRFNLLSAGKLDDDGYSSEFVGGCWKLKKGSRVVATGHKRSAVYVS
                                  GS  LL  VR+IP  R NL+S G+LDD+G++  FVGG WK+ KG+RV+A G K   +Y++
Subjt:  --------------------------GSELLLRGVRYIPSFRFNLLSAGKLDDDGYSSEFVGGCWKLKKGSRVVATGHKRSAVYVS

RVW54404.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

5.7e-54

38.8

Show/hide

Query:  MQVKDLLTYKKIH-KTLGKRPVGMMDNDWSEMDEQVVANIIMSLSMNVCSLVAKETIAKELLKALQDRYEKPSANTKLLLWTKYFNIHMEEGTSVNSHIN
        MQ++D L  +K+H   LG +P  M   +W+ +D QV+  I ++LS +V   V KE    +L+KAL   YEKPSAN K+ L  K FN+ M E  SV  H+N
Subjt:  MQVKDLLTYKKIH-KTLGKRPVGMMDNDWSEMDEQVVANIIMSLSMNVCSLVAKETIAKELLKALQDRYEKPSANTKLLLWTKYFNIHMEEGTSVNSHIN

Query:  ELTDILNKFEGMSVKIEEEVKAVRLLTSLLDSWETMKTAVSNSPGENSLKFSAICDVALSDEARRKLGKMSASTSGAESGVESALVAQNKGKGKMNYNGK
        E   I N+   + +  ++E++A+ +L SL +SWE M+ AVSNS G+  LK++ I D+ L++E RR+        +G  SG  SAL  + +G+G  N N  
Subjt:  ELTDILNKFEGMSVKIEEEVKAVRLLTSLLDSWETMKTAVSNSPGENSLKFSAICDVALSDEARRKLGKMSASTSGAESGVESALVAQNKGKGKMNYNGK

Query:  QQQRYSRGSG-----SSSG-EVECYYCYRKRHVKHFCRKFKEGCENGNNSTNVVTEEKQIEEFLACVQRNISVDKWIVDVAASAHVASDIRWFSSFTAD-
        Q +  SR S      S SG +V+C+ C +  H K  C+  K+  +N ++S N VTEE Q    LA    +  +D W++D  AS H         ++ AD 
Subjt:  QQQRYSRGSG-----SSSG-EVECYYCYRKRHVKHFCRKFKEGCENGNNSTNVVTEEKQIEEFLACVQRNISVDKWIVDVAASAHVASDIRWFSSFTAD-

Query:  -----EGSELLLRGVRYIPSFRFNLLSAGKLDDDGYSSEFVGGCWKLKKGSRVVATGHKRSAVYVS
              GS  LL  VR+IP  R NL+S G+LDD+G++  FVGG WK+ KG+RV+A G K   +Y++
Subjt:  -----EGSELLLRGVRYIPSFRFNLLSAGKLDDDGYSSEFVGGCWKLKKGSRVVATGHKRSAVYVS

RVW80345.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

2.0e-51

36.53

Show/hide

Query:  MQVKDLLTYKKIH-KTLGKRPVGMMDNDWSEMDEQVVANIIMSLSMNVCSLVAKETIAKELLKALQDRYEKPSANTKLLLWTKYFNIHMEEGTSVNSHIN
        MQ++D L  +K+H   LG +P  M   +W+ +D QV+  I ++LS +V   V KE    +L+KAL   YEKPSAN K+ L  K FN+ M E  SV  H+N
Subjt:  MQVKDLLTYKKIH-KTLGKRPVGMMDNDWSEMDEQVVANIIMSLSMNVCSLVAKETIAKELLKALQDRYEKPSANTKLLLWTKYFNIHMEEGTSVNSHIN

Query:  ELTDILNKFEGMSVKIEEEVKAVRLLTSLLDSWETMKTAVSNSPGENSLKFSAICDVALSDEARRKLGKMSASTSGAESGVESALVAQNKGKGKMNYNGK
        E   I N+   + +  ++E++A+ +L SL +SWE M+ AVSNS G+  LK++ I D+ L++E RR+        +G  SG  SAL  + +G+G  N N  
Subjt:  ELTDILNKFEGMSVKIEEEVKAVRLLTSLLDSWETMKTAVSNSPGENSLKFSAICDVALSDEARRKLGKMSASTSGAESGVESALVAQNKGKGKMNYNGK

Query:  QQQRYSRGSG-----SSSG-EVECYYCYRKRHVKHFCRKFKEGCENGNNSTNVVTEEKQIEEFLACVQRNISVDKWIVDVAASAHVASDIRWFSSFTADE
        Q +  SR S      S SG +V+C+ C +  H K  C+  K+  +N ++S N VTEE Q    LA    +  +D W++D  AS H  S      ++ A +
Subjt:  QQQRYSRGSG-----SSSG-EVECYYCYRKRHVKHFCRKFKEGCENGNNSTNVVTEEKQIEEFLACVQRNISVDKWIVDVAASAHVASDIRWFSSFTADE

Query:  --------------------------GSELLLRGVRYIPSFRFNLLSAGKLDDDGYSSEFVGGCWKLKKGSRVVATGHKRSAVYVS
                                  GS  LL  V++IP  R NL+S G+LDD+G++  FVGG WK+ KG+RV+A G K   +Y++
Subjt:  --------------------------GSELLLRGVRYIPSFRFNLLSAGKLDDDGYSSEFVGGCWKLKKGSRVVATGHKRSAVYVS

RVW88410.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

2.6e-51

36.53

Show/hide

Query:  MQVKDLLTYKKIH-KTLGKRPVGMMDNDWSEMDEQVVANIIMSLSMNVCSLVAKETIAKELLKALQDRYEKPSANTKLLLWTKYFNIHMEEGTSVNSHIN
        MQ++D L  +K+H   LG +P  M   +W+ +D QV+  I ++LS +V   V KE    +L+KAL   YEKPSAN K+ L  K FN+ M E  SV  H+N
Subjt:  MQVKDLLTYKKIH-KTLGKRPVGMMDNDWSEMDEQVVANIIMSLSMNVCSLVAKETIAKELLKALQDRYEKPSANTKLLLWTKYFNIHMEEGTSVNSHIN

Query:  ELTDILNKFEGMSVKIEEEVKAVRLLTSLLDSWETMKTAVSNSPGENSLKFSAICDVALSDEARRKLGKMSASTSGAESGVESALVAQNKGKGKMNYNGK
        E   I N+   + +  ++E++A+ +L SL +SWE M+ AVSNS G+  LK++ I D+ L++E RR+        +G  SG  SAL  + +G+G  N N  
Subjt:  ELTDILNKFEGMSVKIEEEVKAVRLLTSLLDSWETMKTAVSNSPGENSLKFSAICDVALSDEARRKLGKMSASTSGAESGVESALVAQNKGKGKMNYNGK

Query:  QQQRYSRGSG-----SSSG-EVECYYCYRKRHVKHFCRKFKEGCENGNNSTNVVTEEKQIEEFLACVQRNISVDKWIVDVAASAHVASDIRWFSSFTADE
        Q +  SR S      S SG +V+C+ C +  H K  C+  K+  +N ++S N VTEE Q    LA    +  +D W++D  AS H         ++ A +
Subjt:  QQQRYSRGSG-----SSSG-EVECYYCYRKRHVKHFCRKFKEGCENGNNSTNVVTEEKQIEEFLACVQRNISVDKWIVDVAASAHVASDIRWFSSFTADE

Query:  --------------------------GSELLLRGVRYIPSFRFNLLSAGKLDDDGYSSEFVGGCWKLKKGSRVVATGHKRSAVYVS
                                  GS  LL  VR+IP  R NL+S G+LDD+G++  FVGG WK+ KG+RV+A G K   +Y++
Subjt:  --------------------------GSELLLRGVRYIPSFRFNLLSAGKLDDDGYSSEFVGGCWKLKKGSRVVATGHKRSAVYVS

RVX00796.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

2.0e-51

36.79

Show/hide

Query:  MQVKDLLTYKKIH-KTLGKRPVGMMDNDWSEMDEQVVANIIMSLSMNVCSLVAKETIAKELLKALQDRYEKPSANTKLLLWTKYFNIHMEEGTSVNSHIN
        MQ++D L  +K+H   LG +P  M   +W+ +D QV+  I ++LS +V   V KE    +L+KAL   YEKPSAN K+ L  K FN+ M E  SV  H+N
Subjt:  MQVKDLLTYKKIH-KTLGKRPVGMMDNDWSEMDEQVVANIIMSLSMNVCSLVAKETIAKELLKALQDRYEKPSANTKLLLWTKYFNIHMEEGTSVNSHIN

Query:  ELTDILNKFEGMSVKIEEEVKAVRLLTSLLDSWETMKTAVSNSPGENSLKFSAICDVALSDEARRKLGKMSASTSGAESGVESALVAQNKGKGKMNYNGK
        E   I N+   + +  ++E++A+ +L SL +SWE M+ AVSNS G+  LK++ I D+ L++E RR+        +G  SG  SAL  + +G+G  N N  
Subjt:  ELTDILNKFEGMSVKIEEEVKAVRLLTSLLDSWETMKTAVSNSPGENSLKFSAICDVALSDEARRKLGKMSASTSGAESGVESALVAQNKGKGKMNYNGK

Query:  QQQRYSRGSG-----SSSG-EVECYYCYRKRHVKHFCRKFKEGCENGNNSTNVVTEEKQIEEFLACVQRNISVDKWIVDVAASAHVASDIRWFSSFTADE
        Q +  SR S      S SG +V+C+ C +  H K  C+  K+  +N ++S N VTEE Q    LA    +  +D W++D  AS H         ++ A +
Subjt:  QQQRYSRGSG-----SSSG-EVECYYCYRKRHVKHFCRKFKEGCENGNNSTNVVTEEKQIEEFLACVQRNISVDKWIVDVAASAHVASDIRWFSSFTADE

Query:  --------------------------GSELLLRGVRYIPSFRFNLLSAGKLDDDGYSSEFVGGCWKLKKGSRVVATGHKRSAVYVS
                                  GS  LL  VR+IP  R NL+S G+LDD+G++  FVGG WK+ KG+RV+A G K S +Y++
Subjt:  --------------------------GSELLLRGVRYIPSFRFNLLSAGKLDDDGYSSEFVGGCWKLKKGSRVVATGHKRSAVYVS

TrEMBL top hits

e value

%identity

Alignment

A0A2N9G6Q3 Uncharacterized protein

1.2e-52

35.6

Show/hide

Query:  MQVKDLLTYKKIH-KTLGKRPVGMMDNDWSEMDEQVVANIIMSLSMNVCSLVAKETIAKELLKALQDRYEKPSANTKLLLWTKYFNIHMEEGTSVNSHIN
        MQ++D L  KK+H   LG++P  M D +W+ +D QV+  I ++LS  V   V KE    EL+ AL   YEKPSAN K+ L  K FN+ M EGT+V  H+N
Subjt:  MQVKDLLTYKKIH-KTLGKRPVGMMDNDWSEMDEQVVANIIMSLSMNVCSLVAKETIAKELLKALQDRYEKPSANTKLLLWTKYFNIHMEEGTSVNSHIN

Query:  ELTDILNKFEGMSVKIEEEVKAVRLLTSLLDSWETMKTAVSNSPGENSLKFSAICDVALSDEARRKLGKMSASTSGAESGVESALVAQNKGKGK-MNYN-
        E   I N+   + ++ ++E++A+ +L SL +SWE M+ AVSNS G+  LK++ I D+ L +E RR+        +G  S   SAL  + +G+GK  NYN 
Subjt:  ELTDILNKFEGMSVKIEEEVKAVRLLTSLLDSWETMKTAVSNSPGENSLKFSAICDVALSDEARRKLGKMSASTSGAESGVESALVAQNKGKGK-MNYN-

Query:  GKQQQRYSRGSGSSSGEVECYYCYRKRHVKHFCRKFKEGCENGNNSTNVVTEEKQIEEFLACVQRNISVDKWIVDVAASAHVASDIRWFSSFTADE----
        G+ + R  R       ++EC+ C +  H++  C + K+  +N N+S NVVTEE      L+    +  ++ W++D  AS H  +      ++ A +    
Subjt:  GKQQQRYSRGSGSSSGEVECYYCYRKRHVKHFCRKFKEGCENGNNSTNVVTEEKQIEEFLACVQRNISVDKWIVDVAASAHVASDIRWFSSFTADE----

Query:  ----------------------GSELLLRGVRYIPSFRFNLLSAGKLDDDGYSSEFVGGCWKLKKGSRVVATGHKRSAVYVS
                              GS  LL+ VR++P  + NL+S G+LD +G++  FVGG WK+ KG+ VVA G K   +Y++
Subjt:  ----------------------GSELLLRGVRYIPSFRFNLLSAGKLDDDGYSSEFVGGCWKLKKGSRVVATGHKRSAVYVS

A0A2N9GHK9 Uncharacterized protein

1.2e-52

35.6

Show/hide

Query:  MQVKDLLTYKKIH-KTLGKRPVGMMDNDWSEMDEQVVANIIMSLSMNVCSLVAKETIAKELLKALQDRYEKPSANTKLLLWTKYFNIHMEEGTSVNSHIN
        MQ++D L  KK+H   LG++P  M D +W+ +D QV+  I ++LS  V   V KE    EL+ AL   YEKPSAN K+ L  K FN+ M EGT+V  H+N
Subjt:  MQVKDLLTYKKIH-KTLGKRPVGMMDNDWSEMDEQVVANIIMSLSMNVCSLVAKETIAKELLKALQDRYEKPSANTKLLLWTKYFNIHMEEGTSVNSHIN

Query:  ELTDILNKFEGMSVKIEEEVKAVRLLTSLLDSWETMKTAVSNSPGENSLKFSAICDVALSDEARRKLGKMSASTSGAESGVESALVAQNKGKGK-MNYN-
        E   I N+   + ++ ++E++A+ +L SL +SWE M+ AVSNS G+  LK++ I D+ L +E RR+        +G  S   SAL  + +G+GK  NYN 
Subjt:  ELTDILNKFEGMSVKIEEEVKAVRLLTSLLDSWETMKTAVSNSPGENSLKFSAICDVALSDEARRKLGKMSASTSGAESGVESALVAQNKGKGK-MNYN-

Query:  GKQQQRYSRGSGSSSGEVECYYCYRKRHVKHFCRKFKEGCENGNNSTNVVTEEKQIEEFLACVQRNISVDKWIVDVAASAHVASDIRWFSSFTADE----
        G+ + R  R       ++EC+ C +  H++  C + K+  +N N+S NVVTEE      L+    +  ++ W++D  AS H  +      ++ A +    
Subjt:  GKQQQRYSRGSGSSSGEVECYYCYRKRHVKHFCRKFKEGCENGNNSTNVVTEEKQIEEFLACVQRNISVDKWIVDVAASAHVASDIRWFSSFTADE----

Query:  ----------------------GSELLLRGVRYIPSFRFNLLSAGKLDDDGYSSEFVGGCWKLKKGSRVVATGHKRSAVYVS
                              GS  LL+ VR++P  + NL+S G+LD +G++  FVGG WK+ KG+ VVA G K   +Y++
Subjt:  ----------------------GSELLLRGVRYIPSFRFNLLSAGKLDDDGYSSEFVGGCWKLKKGSRVVATGHKRSAVYVS

A0A2N9IKI1 Uncharacterized protein

1.2e-52

35.6

Show/hide

Query:  MQVKDLLTYKKIH-KTLGKRPVGMMDNDWSEMDEQVVANIIMSLSMNVCSLVAKETIAKELLKALQDRYEKPSANTKLLLWTKYFNIHMEEGTSVNSHIN
        MQ++D L  KK+H   LG++P  M D +W+ +D QV+  I ++LS  V   V KE    EL+ AL   YEKPSAN K+ L  K FN+ M EGT+V  H+N
Subjt:  MQVKDLLTYKKIH-KTLGKRPVGMMDNDWSEMDEQVVANIIMSLSMNVCSLVAKETIAKELLKALQDRYEKPSANTKLLLWTKYFNIHMEEGTSVNSHIN

Query:  ELTDILNKFEGMSVKIEEEVKAVRLLTSLLDSWETMKTAVSNSPGENSLKFSAICDVALSDEARRKLGKMSASTSGAESGVESALVAQNKGKGK-MNYN-
        E   I N+   + ++ ++E++A+ +L SL +SWE M+ AVSNS G+  LK++ I D+ L +E RR+        +G  S   SAL  + +G+GK  NYN 
Subjt:  ELTDILNKFEGMSVKIEEEVKAVRLLTSLLDSWETMKTAVSNSPGENSLKFSAICDVALSDEARRKLGKMSASTSGAESGVESALVAQNKGKGK-MNYN-

Query:  GKQQQRYSRGSGSSSGEVECYYCYRKRHVKHFCRKFKEGCENGNNSTNVVTEEKQIEEFLACVQRNISVDKWIVDVAASAHVASDIRWFSSFTADE----
        G+ + R  R       ++EC+ C +  H++  C + K+  +N N+S NVVTEE      L+    +  ++ W++D  AS H  +      ++ A +    
Subjt:  GKQQQRYSRGSGSSSGEVECYYCYRKRHVKHFCRKFKEGCENGNNSTNVVTEEKQIEEFLACVQRNISVDKWIVDVAASAHVASDIRWFSSFTADE----

Query:  ----------------------GSELLLRGVRYIPSFRFNLLSAGKLDDDGYSSEFVGGCWKLKKGSRVVATGHKRSAVYVS
                              GS  LL+ VR++P  + NL+S G+LD +G++  FVGG WK+ KG+ VVA G K   +Y++
Subjt:  ----------------------GSELLLRGVRYIPSFRFNLLSAGKLDDDGYSSEFVGGCWKLKKGSRVVATGHKRSAVYVS

A0A2N9J3Y8 Uncharacterized protein

1.2e-52

35.6

Show/hide

Query:  MQVKDLLTYKKIH-KTLGKRPVGMMDNDWSEMDEQVVANIIMSLSMNVCSLVAKETIAKELLKALQDRYEKPSANTKLLLWTKYFNIHMEEGTSVNSHIN
        MQ++D L  KK+H   LG++P  M D +W+ +D QV+  I ++LS  V   V KE    EL+ AL   YEKPSAN K+ L  K FN+ M EGT+V  H+N
Subjt:  MQVKDLLTYKKIH-KTLGKRPVGMMDNDWSEMDEQVVANIIMSLSMNVCSLVAKETIAKELLKALQDRYEKPSANTKLLLWTKYFNIHMEEGTSVNSHIN

Query:  ELTDILNKFEGMSVKIEEEVKAVRLLTSLLDSWETMKTAVSNSPGENSLKFSAICDVALSDEARRKLGKMSASTSGAESGVESALVAQNKGKGK-MNYN-
        E   I N+   + ++ ++E++A+ +L SL +SWE M+ AVSNS G+  LK++ I D+ L +E RR+        +G  S   SAL  + +G+GK  NYN 
Subjt:  ELTDILNKFEGMSVKIEEEVKAVRLLTSLLDSWETMKTAVSNSPGENSLKFSAICDVALSDEARRKLGKMSASTSGAESGVESALVAQNKGKGK-MNYN-

Query:  GKQQQRYSRGSGSSSGEVECYYCYRKRHVKHFCRKFKEGCENGNNSTNVVTEEKQIEEFLACVQRNISVDKWIVDVAASAHVASDIRWFSSFTADE----
        G+ + R  R       ++EC+ C +  H++  C + K+  +N N+S NVVTEE      L+    +  ++ W++D  AS H  +      ++ A +    
Subjt:  GKQQQRYSRGSGSSSGEVECYYCYRKRHVKHFCRKFKEGCENGNNSTNVVTEEKQIEEFLACVQRNISVDKWIVDVAASAHVASDIRWFSSFTADE----

Query:  ----------------------GSELLLRGVRYIPSFRFNLLSAGKLDDDGYSSEFVGGCWKLKKGSRVVATGHKRSAVYVS
                              GS  LL+ VR++P  + NL+S G+LD +G++  FVGG WK+ KG+ VVA G K   +Y++
Subjt:  ----------------------GSELLLRGVRYIPSFRFNLLSAGKLDDDGYSSEFVGGCWKLKKGSRVVATGHKRSAVYVS

A0A438F310 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.8e-54

38.8

Show/hide

Query:  MQVKDLLTYKKIH-KTLGKRPVGMMDNDWSEMDEQVVANIIMSLSMNVCSLVAKETIAKELLKALQDRYEKPSANTKLLLWTKYFNIHMEEGTSVNSHIN
        MQ++D L  +K+H   LG +P  M   +W+ +D QV+  I ++LS +V   V KE    +L+KAL   YEKPSAN K+ L  K FN+ M E  SV  H+N
Subjt:  MQVKDLLTYKKIH-KTLGKRPVGMMDNDWSEMDEQVVANIIMSLSMNVCSLVAKETIAKELLKALQDRYEKPSANTKLLLWTKYFNIHMEEGTSVNSHIN

Query:  ELTDILNKFEGMSVKIEEEVKAVRLLTSLLDSWETMKTAVSNSPGENSLKFSAICDVALSDEARRKLGKMSASTSGAESGVESALVAQNKGKGKMNYNGK
        E   I N+   + +  ++E++A+ +L SL +SWE M+ AVSNS G+  LK++ I D+ L++E RR+        +G  SG  SAL  + +G+G  N N  
Subjt:  ELTDILNKFEGMSVKIEEEVKAVRLLTSLLDSWETMKTAVSNSPGENSLKFSAICDVALSDEARRKLGKMSASTSGAESGVESALVAQNKGKGKMNYNGK

Query:  QQQRYSRGSG-----SSSG-EVECYYCYRKRHVKHFCRKFKEGCENGNNSTNVVTEEKQIEEFLACVQRNISVDKWIVDVAASAHVASDIRWFSSFTAD-
        Q +  SR S      S SG +V+C+ C +  H K  C+  K+  +N ++S N VTEE Q    LA    +  +D W++D  AS H         ++ AD 
Subjt:  QQQRYSRGSG-----SSSG-EVECYYCYRKRHVKHFCRKFKEGCENGNNSTNVVTEEKQIEEFLACVQRNISVDKWIVDVAASAHVASDIRWFSSFTAD-

Query:  -----EGSELLLRGVRYIPSFRFNLLSAGKLDDDGYSSEFVGGCWKLKKGSRVVATGHKRSAVYVS
              GS  LL  VR+IP  R NL+S G+LDD+G++  FVGG WK+ KG+RV+A G K   +Y++
Subjt:  -----EGSELLLRGVRYIPSFRFNLLSAGKLDDDGYSSEFVGGCWKLKKGSRVVATGHKRSAVYVS

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

6.8e-34

27.75

Show/hide

Query:  QVKDLLTYKKIHKTL---GKRPVGMMDNDWSEMDEQVVANIIMSLSMNVCSLVAKETIAKELLKALQDRYEKPSANTKLLLWTKYFNIHMEEGTSVNSHI
        +++DLL  + +HK L    K+P  M   DW+++DE+  + I + LS +V + +  E  A+ +   L+  Y   +   KL L  + + +HM EGT+  SH+
Subjt:  QVKDLLTYKKIHKTL---GKRPVGMMDNDWSEMDEQVVANIIMSLSMNVCSLVAKETIAKELLKALQDRYEKPSANTKLLLWTKYFNIHMEEGTSVNSHI

Query:  NELTDILNKFEGMSVKIEEEVKAVRLLTSLLDSWETMKTAVSNSPGENSLKFSAICDVALSDEARRKLGKMSASTSGAESGVESALVAQNKGKG---KMN
        N    ++ +   + VKIEEE KA+ LL SL  S++ + T + +  G+ +++   +    L +E  RK  +              AL+ + +G+      N
Subjt:  NELTDILNKFEGMSVKIEEEVKAVRLLTSLLDSWETMKTAVSNSPGENSLKFSAICDVALSDEARRKLGKMSASTSGAESGVESALVAQNKGKG---KMN

Query:  YNGKQQQRYSRGSGSSSGEVECYYCYRKRHVKHFC---RKFK---EGCENGNNSTNVVTEEKQIEEFL----ACVQRNISVDKWIVDVAASAHVASDIRW
          G+   R    + S S    CY C +  H K  C   RK K    G +N +N+  +V     +  F+     C+  +    +W+VD AAS H       
Subjt:  YNGKQQQRYSRGSGSSSGEVECYYCYRKRHVKHFC---RKFK---EGCENGNNSTNVVTEEKQIEEFL----ACVQRNISVDKWIVDVAASAHVASDIRW

Query:  FSSFTADE--------------------------GSELLLRGVRYIPSFRFNLLSAGKLDDDGYSSEFVGGCWKLKKGSRVVATGHKRSAVYVSKFEVSR
        F  + A +                          G  L+L+ VR++P  R NL+S   LD DGY S F    W+L KGS V+A G  R  +Y +  E+ +
Subjt:  FSSFTADE--------------------------GSELLLRGVRYIPSFRFNLLSAGKLDDDGYSSEFVGGCWKLKKGSRVVATGHKRSAVYVSKFEVSR

Query:  GSERQRMHRAADGLGRDL
        G     ++ A D +  DL
Subjt:  GSERQRMHRAADGLGRDL

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCAGGTAAAAGATCTTCTTACATACAAAAAAATACACAAGACTTTGGGAAAGAGACCAGTAGGGATGATGGACAATGATTGGAGTGAGATGGATGAGCAGGTTGTTGC
GAACATCATAATGTCGTTATCGATGAATGTTTGTAGTCTGGTGGCAAAAGAGACTATAGCGAAAGAATTGTTGAAGGCCTTGCAAGACAGGTATGAAAAACCTTCTGCCA
ATACAAAATTACTTTTATGGACGAAGTATTTTAATATCCACATGGAGGAGGGAACCTCGGTGAATTCCCACATTAATGAGCTCACCGATATATTGAACAAGTTTGAAGGT
ATGAGTGTCAAGATTGAAGAGGAGGTGAAAGCTGTGAGGCTGTTGACATCTTTACTTGACAGTTGGGAGACGATGAAGACCGCGGTGTCGAATTCACCAGGGGAAAATAG
CTTGAAGTTTTCGGCTATTTGTGATGTCGCCTTATCTGATGAAGCCCGGAGAAAATTAGGAAAAATGTCTGCATCTACTTCAGGGGCAGAAAGCGGGGTTGAATCAGCTT
TGGTTGCTCAAAACAAAGGGAAAGGTAAGATGAATTATAATGGGAAGCAGCAGCAGAGATATAGCAGAGGTAGTGGGAGTTCCAGTGGAGAAGTAGAGTGTTATTACTGC
TACAGAAAGAGACACGTGAAACATTTCTGTAGAAAGTTCAAAGAAGGTTGTGAGAATGGGAACAATTCTACAAACGTTGTAACAGAAGAAAAACAGATTGAGGAATTTCT
AGCTTGTGTTCAGAGGAACATATCTGTAGACAAGTGGATTGTCGACGTTGCAGCATCAGCGCATGTTGCTTCAGACATACGTTGGTTCTCATCTTTTACTGCAGACGAAG
GGTCCGAGTTGTTGTTGCGAGGTGTTAGGTATATTCCTAGCTTTAGATTCAATTTGTTATCCGCAGGAAAGTTAGATGATGATGGCTACAGCAGTGAGTTTGTTGGGGGT
TGCTGGAAGCTCAAAAAGGGATCCAGGGTGGTGGCAACTGGCCACAAGAGATCTGCTGTGTATGTGTCAAAGTTTGAGGTTTCCAGGGGATCTGAGAGACAGAGGATGCA
CAGGGCTGCAGATGGTTTAGGGCGAGACCTTAGAGAATCAGCAGCATTGACAACCAGAACAGATCAAATGAATCTGCCATCAGTTCAAGTACAACAGTTGGGAAGTAGAG
GAGAGTATAAGTGGAACAACTCAGAGAAGTGTTCAATAGGTTGTCAGTTTCATGCCCCAGTTGTCAGACGAAAGAGCGAGCTGATGAAGTTGCATAAGCGAGGGAGTGCA
TCGAGGGAGAAGACTACAGTGGGTACTGAAGTCAAGGGGAATGTCTCTAGAAAGGCAACAGACTTGGATGGGAGCTCTAAGTCATTAGGGGAATTTTCCTTTAGAGGTCG
TTGGGTTCGTTCGAGAAAGGAAGCTACAGGGACACTTAGTTCGAGTGGGACCACGTGGCTATATTTCTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MQVKDLLTYKKIHKTLGKRPVGMMDNDWSEMDEQVVANIIMSLSMNVCSLVAKETIAKELLKALQDRYEKPSANTKLLLWTKYFNIHMEEGTSVNSHINELTDILNKFEG
MSVKIEEEVKAVRLLTSLLDSWETMKTAVSNSPGENSLKFSAICDVALSDEARRKLGKMSASTSGAESGVESALVAQNKGKGKMNYNGKQQQRYSRGSGSSSGEVECYYC
YRKRHVKHFCRKFKEGCENGNNSTNVVTEEKQIEEFLACVQRNISVDKWIVDVAASAHVASDIRWFSSFTADEGSELLLRGVRYIPSFRFNLLSAGKLDDDGYSSEFVGG
CWKLKKGSRVVATGHKRSAVYVSKFEVSRGSERQRMHRAADGLGRDLRESAALTTRTDQMNLPSVQVQQLGSRGEYKWNNSEKCSIGCQFHAPVVRRKSELMKLHKRGSA
SREKTTVGTEVKGNVSRKATDLDGSSKSLGEFSFRGRWVRSRKEATGTLSSSGTTWLYF

Moc08g38540 (gene) of Bitter gourd (OHB3-1) v2 genome