CuGenDBv2

Gene ID	Moc08g43130
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	VQ domain-containing protein
Genome location	chr8:33136606..33142085
RNA-Seq Expression	Moc08g43130
Synteny	Moc08g43130
Gene Ontology terms	GO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domains	IPR008889 - VQ IPR039335 - Sigma factor binding protein 1/2

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0063579.1 VQ motif-containing protein [Cucumis melo var. makuwa]

2.0e-19

55.36

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Query:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTA---VSTDPKGYYGLVSG------KVGELGEGCFRQDEM
        KPIKVKYIS+PMMVKAN+ESEFR IVQ+LTGQ+SPD   ++      ++ NHAFYPPPPS++   VS DP+  YG  SG      ++ +  EG + + EM
Subjt:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTA---VSTDPKGYYGLVSG------KVGELGEGCFRQDEM

Query:  QG-FSGFQASCC
        +G FSGFQAS C
Subjt:  QG-FSGFQASCC

KAG6599333.1 hypothetical protein SDJN03_09111, partial [Cucurbita argyrosperma subsp. sororia]

1.3e-26

58.27

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Query:  CGEMNQYKNHSQSQNTTKVQRKPIKVKYISSPMMVKASNAMDFRAIVQQLTGFNSDATISPTNHRPPP-ATRAPSSTLL-----LEAIGVPDDRSSLLHL
        CGE N++K+  QSQN TKVQRKPIKVKYISSPMM+KASNA +FRAIVQQLTGF S +    +NH+PPP A + PS++ L     +EA+ + D+ SSLL  
Subjt:  CGEMNQYKNHSQSQNTTKVQRKPIKVKYISSPMMVKASNAMDFRAIVQQLTGFNSDATISPTNHRPPP-ATRAPSSTLL-----LEAIGVPDDRSSLLHL

Query:  DEGGCF-GRENDLPNTFLGFQSSFLFQ
        D+  CF   +N L N F+GFQ+S LFQ
Subjt:  DEGGCF-GRENDLPNTFLGFQSSFLFQ

KGN60779.1 hypothetical protein Csa_019238 [Cucumis sativus]

7.0e-20

51.82

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Query:  CGEMNQYKNH------SQSQNTTKVQRKPIKVKYISSPMMVKASNAMDFRAIVQQLTGFNSDATISPTNHR-PPPATRAPSSTL-----LLEAIGVPDDR
        CGE NQY NH      SQ+QN TKVQRKPIKVKYISSPMM+KASNA++FRAIVQQLTGF+S+      N +      R PS+        +E +   DD 
Subjt:  CGEMNQYKNH------SQSQNTTKVQRKPIKVKYISSPMMVKASNAMDFRAIVQQLTGFNSDATISPTNHR-PPPATRAPSSTL-----LLEAIGVPDDR

Query:  --SSLLHLDEGGCFGREND---LPNTFLGFQSSFLFQ
           SLL  D  GCF  +N+   LPN  + FQSS  FQ
Subjt:  --SSLLHLDEGGCFGREND---LPNTFLGFQSSFLFQ

XP_022142960.1 sigma factor binding protein 1, chloroplastic-like [Momordica charantia]

2.0e-51

100

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Query:  MEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTDPKGYYGLVSGKVGELGEGCFRQDEMQGFSGFQ
        MEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTDPKGYYGLVSGKVGELGEGCFRQDEMQGFSGFQ
Subjt:  MEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTDPKGYYGLVSGKVGELGEGCFRQDEMQGFSGFQ

Query:  ASC
        ASC
Subjt:  ASC

XP_038877668.1 sigma factor binding protein 1, chloroplastic-like [Benincasa hispida]

2.2e-18

60.58

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Query:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAV-STDPKGYYGLVSGKVGELGEGCFRQDEMQG-FSGFQ
        KPIKVKYIS+PMMVKAN+ESEFR IVQ+LTGQ+SP DAF+  A    E+ N  FYPPP S A  S DPK  Y   SG V    +G     EM+G FSGFQ
Subjt:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAV-STDPKGYYGLVSGKVGELGEGCFRQDEMQG-FSGFQ

Query:  ASCC
        AS C
Subjt:  ASCC

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LFF9 VQ domain-containing protein

2.4e-18

53.57

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Query:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTA--VSTDPKGYYG------LVSGKVGELGEGCFRQDEMQ
        KPIKVKYIS+PMMVKAN+ESEFR IVQ+LTGQ+SPD   +S      ++ NH FYPPPPS++  VS DPK  YG      ++  ++ +  EG + + EM+
Subjt:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTA--VSTDPKGYYG------LVSGKVGELGEGCFRQDEMQ

Query:  --GFSGFQASCC
           FSGFQAS C
Subjt:  --GFSGFQASCC

A0A0A0LIA7 VQ domain-containing protein

3.4e-20

51.82

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Query:  CGEMNQYKNH------SQSQNTTKVQRKPIKVKYISSPMMVKASNAMDFRAIVQQLTGFNSDATISPTNHR-PPPATRAPSSTL-----LLEAIGVPDDR
        CGE NQY NH      SQ+QN TKVQRKPIKVKYISSPMM+KASNA++FRAIVQQLTGF+S+      N +      R PS+        +E +   DD 
Subjt:  CGEMNQYKNH------SQSQNTTKVQRKPIKVKYISSPMMVKASNAMDFRAIVQQLTGFNSDATISPTNHR-PPPATRAPSSTL-----LLEAIGVPDDR

Query:  --SSLLHLDEGGCFGREND---LPNTFLGFQSSFLFQ
           SLL  D  GCF  +N+   LPN  + FQSS  FQ
Subjt:  --SSLLHLDEGGCFGREND---LPNTFLGFQSSFLFQ

A0A5A7VDH6 VQ motif-containing protein

9.8e-20

55.36

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Query:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTA---VSTDPKGYYGLVSG------KVGELGEGCFRQDEM
        KPIKVKYIS+PMMVKAN+ESEFR IVQ+LTGQ+SPD   ++      ++ NHAFYPPPPS++   VS DP+  YG  SG      ++ +  EG + + EM
Subjt:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTA---VSTDPKGYYGLVSG------KVGELGEGCFRQDEM

Query:  QG-FSGFQASCC
        +G FSGFQAS C
Subjt:  QG-FSGFQASCC

A0A6J1CME4 sigma factor binding protein 1, chloroplastic-like

9.8e-52

100

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Query:  MEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTDPKGYYGLVSGKVGELGEGCFRQDEMQGFSGFQ
        MEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTDPKGYYGLVSGKVGELGEGCFRQDEMQGFSGFQ
Subjt:  MEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTDPKGYYGLVSGKVGELGEGCFRQDEMQGFSGFQ

Query:  ASC
        ASC
Subjt:  ASC

A0A6J1FJE0 sigma factor binding protein 1, chloroplastic-like

1.1e-13

52.83

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Query:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTDPKGYYGLVSGK------VGELGEGCFRQDEMQGF
        KPIKVKYIS+PMMVKAN+E EFR IVQ+LTGQ+S DDAF+       +E NHAF  PP ST  S D K  Y LVS        VGE+ +  +        
Subjt:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTDPKGYYGLVSGK------VGELGEGCFRQDEMQGF

Query:  SGFQAS
         GFQAS
Subjt:  SGFQAS

SwissProt top hits

e value

%identity

Alignment

O80669 Sigma factor binding protein 2, chloroplastic

9.5e-04

42.42

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Query:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTD
        KPIKV+YISNPM V+    S+FRE+VQ LTGQ++ D                   PP P+T  + D
Subjt:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTD

Q9LDH1 Sigma factor binding protein 1, chloroplastic

2.5e-04

36.94

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Query:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTDPKGYYGLVSGKVGE--LGEGCFRQDEMQ-GFSGF
        KPIKV+YISNPM V+    S+FRE+VQ LTGQ++ D   E P +    + +H   PP  + A     +  +G       E    E  F  D+M  GFSGF
Subjt:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTDPKGYYGLVSGKVGE--LGEGCFRQDEMQ-GFSGF

Query:  QASCCGEMNQY
         ++    +N +
Subjt:  QASCCGEMNQY

Arabidopsis top hits

e value

%identity

Alignment

AT2G41180.1 VQ motif-containing protein

6.8e-05

42.42

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Query:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTD
        KPIKV+YISNPM V+    S+FRE+VQ LTGQ++ D                   PP P+T  + D
Subjt:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTD

AT3G56710.1 sigma factor binding protein 1

1.8e-05

36.94

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Query:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTDPKGYYGLVSGKVGE--LGEGCFRQDEMQ-GFSGF
        KPIKV+YISNPM V+    S+FRE+VQ LTGQ++ D   E P +    + +H   PP  + A     +  +G       E    E  F  D+M  GFSGF
Subjt:  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTDPKGYYGLVSGKVGE--LGEGCFRQDEMQ-GFSGF

Query:  QASCCGEMNQY
         ++    +N +
Subjt:  QASCCGEMNQY

Sequences

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CDS sequence

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ATGGAGAAGCCCATCAAAGTCAAGTACATTTCGAACCCGATGATGGTGAAGGCGAACTCCGAATCAGAGTTTCGAGAAATAGTTCAGAGGCTTACCGGCCAGAACTCGCC
CGATGATGCTTTTGAATCACCAGCTTTTGGAGGAGAAGAAGAATTAAACCATGCTTTTTATCCTCCTCCGCCGTCTACGGCGGTGTCGACGGACCCTAAGGGTTATTATG
GCTTGGTCTCCGGTAAGGTCGGCGAGCTCGGCGAAGGCTGCTTCCGGCAAGATGAAATGCAGGGTTTTTCTGGGTTTCAAGCTTCTTGCTGTGGAGAGATGAACCAATAC
AAGAATCATAGCCAGAGCCAAAACACAACCAAAGTTCAGAGAAAACCCATAAAAGTAAAGTACATTTCAAGCCCAATGATGGTGAAAGCAAGCAATGCAATGGACTTCAG
AGCCATTGTTCAGCAACTCACTGGCTTCAACTCCGACGCCACGATTTCTCCGACGAACCACCGACCACCTCCCGCCACCCGAGCTCCGTCTTCAACGTTGCTTTTGGAAG
CTATCGGAGTCCCAGACGACAGGTCGTCGTTGCTCCATCTAGATGAAGGTGGTTGTTTTGGAAGAGAGAATGATCTTCCCAACACCTTTCTGGGATTTCAATCTTCTTTT
TTGTTTCAATAG

mRNA sequence

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Protein sequence

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MEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTDPKGYYGLVSGKVGELGEGCFRQDEMQGFSGFQASCCGEMNQY
KNHSQSQNTTKVQRKPIKVKYISSPMMVKASNAMDFRAIVQQLTGFNSDATISPTNHRPPPATRAPSSTLLLEAIGVPDDRSSLLHLDEGGCFGRENDLPNTFLGFQSSF
LFQ

Moc08g43130 (gene) of Bitter gourd (OHB3-1) v2 genome