CuGenDBv2

Gene ID	Moc08g43340
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribosomal protein
Genome location	chr8:33310998..33314880
RNA-Seq Expression	Moc08g43340
Synteny	Moc08g43340
Gene Ontology terms	GO:0006414 - translational elongation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0003746 - translation elongation factor activity (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR000529 - Ribosomal protein S6 IPR014717 - Translation elongation factor EF1B/ribosomal protein S6 IPR035980 - Ribosomal protein S6 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6596891.1 hypothetical protein SDJN03_10071, partial [Cucurbita argyrosperma subsp. sororia]

1.9e-66

88.89

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGR++QGQLMQMTMMATPNMNKELHYLNKEDR+LRWLLVKHRD K
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK

Query:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDN-DEEYDVEQEESKGE
        YGLEFLSEDD K EL+KFPR  ++GDDD DEEDDDDDN DEEYDVEQEE   E
Subjt:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDN-DEEYDVEQEESKGE

XP_022143220.1 uncharacterized protein LOC111013137 [Momordica charantia]

9.1e-77

100

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK
        MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK

Query:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDNDEEYDVEQEESKGE
        YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDNDEEYDVEQEESKGE
Subjt:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDNDEEYDVEQEESKGE

XP_022936695.1 uncharacterized protein LOC111443208 [Cucurbita moschata]

1.9e-66

88.89

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGR++QGQLMQMTMMATPNMNKELHYLNKEDR+LRWLLVKHRDTK
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK

Query:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEE-DDDDDNDEEYDVEQEESKGE
        YGLEFLSEDD K EL+KFPR  ++GDDD DEE DDDDD+DEEYDVEQEE   E
Subjt:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEE-DDDDDNDEEYDVEQEESKGE

XP_023005590.1 uncharacterized protein LOC111498530 [Cucurbita maxima]

2.3e-64

86.18

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTD+KSFGVVQLGYGIKKLDGR++QGQLMQMTMMATPNMNKELHYLNKEDR+LRWLLVKHRDTK
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK

Query:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDNDEEYDVEQEESKGE
        YGLEFLSEDD K EL+KFPR  ++GDDD DEEDDDDD+D   DVEQE  + E
Subjt:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDNDEEYDVEQEESKGE

XP_023539684.1 uncharacterized protein LOC111800294 [Cucurbita pepo subsp. pepo]

4.2e-66

88.24

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGR++QGQLMQMTMMATPNMNKELHYLNKEDR+LRWLLVKHRD K
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK

Query:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEE-DDDDDNDEEYDVEQEESKGE
        YGLEFLSEDD K EL+KFPR  ++GDDD DEE DDDDD+DEEYDVEQEE   E
Subjt:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEE-DDDDDNDEEYDVEQEESKGE

TrEMBL top hits

e value

%identity

Alignment

A0A2N9FW87 Uncharacterized protein

3.4e-61

82.67

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK
        MPLYDCMLL+KPHVKKEAL+DLVAR+GKHV+RRNGV+TD+KSFG VQLGYGIKKLDGR+YQGQLMQMTMMATPN+N+ELHYLN EDR+LRWLLVKHR+TK
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK

Query:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDNDEEYDVEQEESK
        YGLEFL+EDD KGELSKF R  I  D+D DE+DDDDD DEEYDV+QEE K
Subjt:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDNDEEYDVEQEESK

A0A6J1CN79 uncharacterized protein LOC111013137

4.4e-77

100

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK
        MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK

Query:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDNDEEYDVEQEESKGE
        YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDNDEEYDVEQEESKGE
Subjt:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDNDEEYDVEQEESKGE

A0A6J1FEF6 uncharacterized protein LOC111443208

9.2e-67

88.89

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGR++QGQLMQMTMMATPNMNKELHYLNKEDR+LRWLLVKHRDTK
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK

Query:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEE-DDDDDNDEEYDVEQEESKGE
        YGLEFLSEDD K EL+KFPR  ++GDDD DEE DDDDD+DEEYDVEQEE   E
Subjt:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEE-DDDDDNDEEYDVEQEESKGE

A0A6J1KXT7 uncharacterized protein LOC111498530

1.1e-64

86.18

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTD+KSFGVVQLGYGIKKLDGR++QGQLMQMTMMATPNMNKELHYLNKEDR+LRWLLVKHRDTK
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK

Query:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDNDEEYDVEQEESKGE
        YGLEFLSEDD K EL+KFPR  ++GDDD DEEDDDDD+D   DVEQE  + E
Subjt:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDNDEEYDVEQEESKGE

A0A7N2L1D1 Uncharacterized protein

8.1e-63

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK
        MPLYDCMLL+KPHVKKEAL++LVAR+GKHV+RRNGV+ D+KSFG+VQLGYGIKKLDGR+YQGQLMQMTMMATPN+NKELHYLNKEDR+LRWLLVKHRDTK
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK

Query:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDNDEEYDVEQEESK
        YGLEFLSEDD KGELSKF R  I  DDD DE+DDDDD D+EYDV+QEE K
Subjt:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDDDNDEEYDVEQEESK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G18760.1 Translation elongation factor EF1B/ribosomal protein S6 family protein

3.2e-43

64.71

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK
        MPLYDCMLL KP ++KE L+DLVAR+GKHV+ RNGV+T+IKSFG V+LGYGI+KLDGR YQGQLMQ+TMM TPNMNKELHYLNKED++LRWLLVKHRD K
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK

Query:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDD
         G    SE +    +      G + D  + +EDD++
Subjt:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDD

AT3G18760.2 Translation elongation factor EF1B/ribosomal protein S6 family protein

1.4e-38

61.03

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK
        MPLYDCMLL KP ++KE L+DLVAR+GKHV+ RNGV+T+IKSFG V+LGYGI+KLDGR Y     Q+TMM TPNMNKELHYLNKED++LRWLLVKHRD K
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTK

Query:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDD
         G    SE +    +      G + D  + +EDD++
Subjt:  YGLEFLSEDDVKGELSKFPRIGIMGDDDTDEEDDDD

Sequences

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CDS sequence

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ATGGAAGATACACAGTCCCAAGTGGTTATATCTCATCTAGCTAATCCTGAGTTTGATTGCTCCTTATCAAAAGAGAACGACAAGCACACAAATTGGTGGAAATTCCTACT
GAATGCCAGAATACCGCTGTGGGAGTTATGGGACAGAAGGAATAAGGCACAATCAAGAATTGCAGATACCCAAAAGGGGGGAGACGGGGCCGGCGCCGGCCGCCATTTCA
TTTCTCACGGCACTCGGTTAGAATTTGCAACAGCTTTAAAGAGGAACTTGGGTGCTAAAGAAGAGGAGATTAAGATGCCTCTTTACGATTGTATGCTTTTGATGAAACCC
CATGTGAAGAAGGAGGCCTTGTTGGACTTGGTTGCTAGAGTGGGCAAGCATGTGTTCAGAAGAAATGGGGTCGTCACTGACATTAAGTCATTTGGAGTTGTTCAACTGGG
TTATGGAATTAAGAAACTTGATGGAAGATTTTATCAGGGCCAACTTATGCAGATGACAATGATGGCTACTCCCAACATGAACAAGGAGTTACATTACTTGAACAAGGAAG
ATCGTATGTTGCGATGGCTTTTGGTGAAACATCGTGACACAAAATATGGGTTGGAATTCCTTAGCGAAGACGATGTGAAGGGTGAACTCAGCAAATTTCCTCGAATTGGT
ATAATGGGTGATGATGACACTGATGAAGAAGACGATGATGATGATAATGATGAAGAATACGATGTGGAACAAGAAGAGAGCAAAGGAGAGTGA

mRNA sequence

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Protein sequence

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MEDTQSQVVISHLANPEFDCSLSKENDKHTNWWKFLLNARIPLWELWDRRNKAQSRIADTQKGGDGAGAGRHFISHGTRLEFATALKRNLGAKEEEIKMPLYDCMLLMKP
HVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFYQGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTKYGLEFLSEDDVKGELSKFPRIG
IMGDDDTDEEDDDDDNDEEYDVEQEESKGE

Moc08g43340 (gene) of Bitter gourd (OHB3-1) v2 genome