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Moc08g43470 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g43470
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionprotein SHORT-ROOT 2-like
Genome locationchr8:33411414..33411875
RNA-Seq ExpressionMoc08g43470
SyntenyMoc08g43470
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063552.1 uncharacterized protein E6C27_scaffold329G00590 [Cucumis melo var. makuwa]1.1e-5979.39Show/hide
Query:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH-----------HHRRMSISSDGDMPKPLMRCSSAKDKSRSSP--ENKDRRPHFISRLGRHG
        MDDSNEHKGNSS S+LKEMLKSSLCLSCCLRKHRNGHHH           HHRRMSISSDGD P PL RCSSAKDKSRS    + KDR P+FISRLGRHG
Subjt:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH-----------HHRRMSISSDGDMPKPLMRCSSAKDKSRSSP--ENKDRRPHFISRLGRHG

Query:  RRHSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY
        RRHSASADF YDA SYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPK+ PSSS+  SRE+ TA+
Subjt:  RRHSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY

XP_008460859.1 PREDICTED: uncharacterized protein LOC103499607 [Cucumis melo]1.1e-5979.39Show/hide
Query:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH-----------HHRRMSISSDGDMPKPLMRCSSAKDKSRSSP--ENKDRRPHFISRLGRHG
        MDDSNEHKGNSS S+LKEMLKSSLCLSCCLRKHRNGHHH           HHRRMSISSDGD P PL RCSSAKDKSRS    + KDR P+FISRLGRHG
Subjt:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH-----------HHRRMSISSDGDMPKPLMRCSSAKDKSRSSP--ENKDRRPHFISRLGRHG

Query:  RRHSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY
        RRHSASADF YDA SYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPK+ PSSS+  SRE+ TA+
Subjt:  RRHSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY

XP_011650096.1 NEDD8-specific protease 1 [Cucumis sativus]1.5e-5880.37Show/hide
Query:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNG-------HHHHHRR-MSISSDGD-MPKPLMRCSSAKDKSRSSP--ENKDRRPHFISRLGRHGRR
        MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNG       HHHHHRR MSISSDG+  P PLMRCSSAKDKSRS    + KDR P FISRLGRHGRR
Subjt:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNG-------HHHHHRR-MSISSDGD-MPKPLMRCSSAKDKSRSSP--ENKDRRPHFISRLGRHGRR

Query:  HSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY
        HSASADFHYDA SYSLNFDEGYDEGHVDD+FPLRNFSSRLPASPPK+ PS+++  SRE+ TA+
Subjt:  HSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY

XP_023536962.1 uncharacterized protein LOC111798189 [Cucurbita pepo subsp. pepo]4.4e-5880.12Show/hide
Query:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH-----HHRRMSISSDGDMPKPLMRCSSAKDKSRS--SPENK-DRRPHFISRLGRHGRRH-S
        MDDSNEHK N+SPSSLK  +KSSLCLSCCLR+HRNGHHH     H RRMS SSDGD+P PL RCSSAKDKSRS  SPE+K D RPHFISRLGRH RRH S
Subjt:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH-----HHRRMSISSDGDMPKPLMRCSSAKDKSRS--SPENK-DRRPHFISRLGRHGRRH-S

Query:  ASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY
        AS DFHYDA SY+LNFDEGYDEGHVDD FPLRNFSSRLPASPPK+ P SSS TSRE+TTAY
Subjt:  ASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY

XP_038890730.1 homeobox protein MOX-2 [Benincasa hispida]1.4e-6485.62Show/hide
Query:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNG------HHHHHRRMSISSDGDMPKPLMRCSSAKDKSRS--SPENKDRRPHFISRLGRHGRRHSA
        MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNG      HHHHHRRMSISSDGD P PLMRCSSAKDKSRS  SPE KDRRPHFISRLGRHGRRHSA
Subjt:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNG------HHHHHRRMSISSDGDMPKPLMRCSSAKDKSRS--SPENKDRRPHFISRLGRHGRRHSA

Query:  SADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY
        SADF YDA SY+LNFDEGYDEGHVDD+FPLRNFSSRLPASP K+ P SSSN SRE+ TA+
Subjt:  SADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY

TrEMBL top hitse value%identityAlignment
A0A0A0LL60 Uncharacterized protein7.4e-5980.37Show/hide
Query:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNG-------HHHHHRR-MSISSDGD-MPKPLMRCSSAKDKSRSSP--ENKDRRPHFISRLGRHGRR
        MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNG       HHHHHRR MSISSDG+  P PLMRCSSAKDKSRS    + KDR P FISRLGRHGRR
Subjt:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNG-------HHHHHRR-MSISSDGD-MPKPLMRCSSAKDKSRSSP--ENKDRRPHFISRLGRHGRR

Query:  HSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY
        HSASADFHYDA SYSLNFDEGYDEGHVDD+FPLRNFSSRLPASPPK+ PS+++  SRE+ TA+
Subjt:  HSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY

A0A1S3CDF1 uncharacterized protein LOC1034996075.1e-6079.39Show/hide
Query:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH-----------HHRRMSISSDGDMPKPLMRCSSAKDKSRSSP--ENKDRRPHFISRLGRHG
        MDDSNEHKGNSS S+LKEMLKSSLCLSCCLRKHRNGHHH           HHRRMSISSDGD P PL RCSSAKDKSRS    + KDR P+FISRLGRHG
Subjt:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH-----------HHRRMSISSDGDMPKPLMRCSSAKDKSRSSP--ENKDRRPHFISRLGRHG

Query:  RRHSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY
        RRHSASADF YDA SYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPK+ PSSS+  SRE+ TA+
Subjt:  RRHSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY

A0A5D3BFQ4 Uncharacterized protein5.1e-6079.39Show/hide
Query:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH-----------HHRRMSISSDGDMPKPLMRCSSAKDKSRSSP--ENKDRRPHFISRLGRHG
        MDDSNEHKGNSS S+LKEMLKSSLCLSCCLRKHRNGHHH           HHRRMSISSDGD P PL RCSSAKDKSRS    + KDR P+FISRLGRHG
Subjt:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH-----------HHRRMSISSDGDMPKPLMRCSSAKDKSRSSP--ENKDRRPHFISRLGRHG

Query:  RRHSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY
        RRHSASADF YDA SYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPK+ PSSS+  SRE+ TA+
Subjt:  RRHSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY

A0A6J1FDP2 uncharacterized protein LOC1114444394.8e-5879.5Show/hide
Query:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH-----HHRRMSISSDGDMPKPLMRCSSAKDKSRS--SPENK-DRRPHFISRLGRHGRRH-S
        MDDSNEHK N+SPSSLK  +KSSLCLSCCLR+HRNGHHH     H RRMS SSDGD+P PL RCSSAKDKSRS  SPE+K D RPHFISRLGRH RRH S
Subjt:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH-----HHRRMSISSDGDMPKPLMRCSSAKDKSRS--SPENK-DRRPHFISRLGRHGRRH-S

Query:  ASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY
        AS DFHYDA SY+LNFDEGYDEGHVDD FPLRNFSSRLPASPPK+ P SS+ TSRE+TTAY
Subjt:  ASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY

A0A6J1HQB7 uncharacterized protein LOC1114657101.8e-5779.5Show/hide
Query:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH-----HHRRMSISSDGDMPKPLMRCSSAKDKSRS--SPENK-DRRPHFISRLGRHGRRH-S
        MDDSNEHK N+SPSSLK  +KSSLCLSCCLR+HRNGHHH     H RRMS SSDGD+P PL RCSSAKDKSRS  SPE+K D RPHFISRLG H RRH S
Subjt:  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH-----HHRRMSISSDGDMPKPLMRCSSAKDKSRS--SPENK-DRRPHFISRLGRHGRRH-S

Query:  ASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY
        AS DFHYDA SY+LNFDEGYDEGHVDD FPLRNFSSRLPASPPK+ P SSS TSRE+TTAY
Subjt:  ASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G01430.1 BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1)9.4e-0649.12Show/hide
Query:  GRHGRRHSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSS
        G    R S    F YD  SYSLNFD+G   GH DDEFP R++S R  A  P  P S+
Subjt:  GRHGRRHSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSS

AT5G14890.1 NHL domain-containing protein7.2e-0642.25Show/hide
Query:  FISRLGRH---------GRRHSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSS
        FI R GR+         G        F YD+ SYSLNFD+G   GH +DEFP R++S R  A  P  P S+
Subjt:  FISRLGRH---------GRRHSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSS

AT5G35090.1 unknown protein3.9e-1234.62Show/hide
Query:  SLKEMLKSSLCLSCCLRKHRNGHHHHHRRMSISSDGDMPKPLMRCSSAKDKSRSSPEN---KDRRPHFISRL------------------------GRHG
        SL++ LKS  C++ C    R  +HHHH         ++P  L       +KS  SP     K + P     L                        G+H 
Subjt:  SLKEMLKSSLCLSCCLRKHRNGHHHHHRRMSISSDGDMPKPLMRCSSAKDKSRSSPEN---KDRRPHFISRL------------------------GRHG

Query:  RRHSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSN
        RRH  +ADFHYD  SY+LNFD+G ++ ++ D FPLRNFS+RLP SPP +  ++ S+
Subjt:  RRHSASADFHYDAHSYSLNFDEGYDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGATTCCAACGAACACAAGGGAAATTCCTCGCCGTCTTCTCTCAAGGAGATGCTCAAATCCTCTCTGTGTTTGTCTTGCTGCCTCCGTAAGCACCGGAACGGCCA
CCACCACCACCACCGGCGGATGTCGATATCCTCCGACGGCGATATGCCAAAGCCGCTCATGCGGTGTTCCTCCGCCAAGGATAAGTCCAGATCCAGTCCTGAGAACAAGG
ACAGGCGTCCGCATTTTATCTCCCGGCTCGGCCGCCATGGACGCCGTCACTCGGCGTCGGCTGATTTTCACTACGATGCGCACAGTTACTCGCTCAATTTTGACGAAGGA
TACGATGAAGGCCATGTCGATGATGAGTTTCCGCTTAGGAACTTCTCGTCTAGGTTACCGGCTTCTCCGCCGAAGACACCGCCGTCTTCCTCGTCAAATACGTCAAGGGA
GATAACCACGGCGTACAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGACGATTCCAACGAACACAAGGGAAATTCCTCGCCGTCTTCTCTCAAGGAGATGCTCAAATCCTCTCTGTGTTTGTCTTGCTGCCTCCGTAAGCACCGGAACGGCCA
CCACCACCACCACCGGCGGATGTCGATATCCTCCGACGGCGATATGCCAAAGCCGCTCATGCGGTGTTCCTCCGCCAAGGATAAGTCCAGATCCAGTCCTGAGAACAAGG
ACAGGCGTCCGCATTTTATCTCCCGGCTCGGCCGCCATGGACGCCGTCACTCGGCGTCGGCTGATTTTCACTACGATGCGCACAGTTACTCGCTCAATTTTGACGAAGGA
TACGATGAAGGCCATGTCGATGATGAGTTTCCGCTTAGGAACTTCTCGTCTAGGTTACCGGCTTCTCCGCCGAAGACACCGCCGTCTTCCTCGTCAAATACGTCAAGGGA
GATAACCACGGCGTACAGATAA
Protein sequenceShow/hide protein sequence
MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHHHRRMSISSDGDMPKPLMRCSSAKDKSRSSPENKDRRPHFISRLGRHGRRHSASADFHYDAHSYSLNFDEG
YDEGHVDDEFPLRNFSSRLPASPPKTPPSSSSNTSREITTAYR