; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc08g45930 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g45930
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionMediator of RNA polymerase II transcription subunit 20
Genome locationchr8:35170353..35172843
RNA-Seq ExpressionMoc08g45930
SyntenyMoc08g45930
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0016592 - mediator complex (cellular component)
GO:0003713 - transcription coactivator activity (molecular function)
InterPro domainsIPR013921 - Mediator complex, subunit Med20


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061469.1 mediator of RNA polymerase II transcription subunit 20a-like isoform X1 [Cucumis melo var. makuwa]2.0e-11695Show/hide
Query:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYRPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQTIMEK
        MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFY+PILRDQN PAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQ IMEK
Subjt:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYRPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQTIMEK

Query:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNHSENLRGIVMEMEYLPISSMEKSRQLMEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT
        LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPN+SENLRGIVME+EYLPISSMEKSRQ+M+EFF+VWQEAMSKSSLPGRFMHIE NFAEYGLSD+YTPQHT
Subjt:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNHSENLRGIVMEMEYLPISSMEKSRQLMEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT

Query:  AVQYANVMAQLIATVQAVQS
        AVQY NVMAQLIATVQAVQS
Subjt:  AVQYANVMAQLIATVQAVQS

XP_004141069.1 mediator of RNA polymerase II transcription subunit 20a [Cucumis sativus]3.4e-11695.45Show/hide
Query:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYRPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQTIMEK
        MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFY+PILRDQN PAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQ IMEK
Subjt:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYRPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQTIMEK

Query:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNHSENLRGIVMEMEYLPISSMEKSRQLMEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT
        LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPN+SENLRGIVME+EYLPISSMEKSRQ+MEEFF+VWQEAMSKSSLPGRFMHIE NFAEYGLSDYYT QHT
Subjt:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNHSENLRGIVMEMEYLPISSMEKSRQLMEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT

Query:  AVQYANVMAQLIATVQAVQS
        AVQY NVMAQLIATVQAVQS
Subjt:  AVQYANVMAQLIATVQAVQS

XP_008459711.1 PREDICTED: mediator of RNA polymerase II transcription subunit 20a-like isoform X1 [Cucumis melo]2.0e-11695Show/hide
Query:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYRPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQTIMEK
        MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFY+PILRDQN PAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQ IMEK
Subjt:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYRPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQTIMEK

Query:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNHSENLRGIVMEMEYLPISSMEKSRQLMEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT
        LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPN+SENLRGIVME+EYLPISSMEKSRQ+M+EFF+VWQEAMSKSSLPGRFMHIE NFAEYGLSD+YTPQHT
Subjt:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNHSENLRGIVMEMEYLPISSMEKSRQLMEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT

Query:  AVQYANVMAQLIATVQAVQS
        AVQY NVMAQLIATVQAVQS
Subjt:  AVQYANVMAQLIATVQAVQS

XP_022946745.1 mediator of RNA polymerase II transcription subunit 20a-like [Cucurbita moschata]1.3e-11594.55Show/hide
Query:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYRPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQTIMEK
        MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFY+PILRD N+ A EFPRDFLGIS+PEQPNKYYLIIRGQRIVLEADFTIQ IMEK
Subjt:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYRPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQTIMEK

Query:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNHSENLRGIVMEMEYLPISSMEKSRQLMEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT
        LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPN+SENLRGIVME+EYLPISSMEKS+Q+MEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYT QHT
Subjt:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNHSENLRGIVMEMEYLPISSMEKSRQLMEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT

Query:  AVQYANVMAQLIATVQAVQS
        AVQYANVMAQLIATVQAVQS
Subjt:  AVQYANVMAQLIATVQAVQS

XP_038889134.1 mediator of RNA polymerase II transcription subunit 20a-like isoform X1 [Benincasa hispida]3.6e-11896.82Show/hide
Query:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYRPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQTIMEK
        MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFY+PILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQ IMEK
Subjt:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYRPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQTIMEK

Query:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNHSENLRGIVMEMEYLPISSMEKSRQLMEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT
        LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPN+SENLRGIVME+EYLPISSMEKSR++MEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYT QHT
Subjt:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNHSENLRGIVMEMEYLPISSMEKSRQLMEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT

Query:  AVQYANVMAQLIATVQAVQS
        AVQYANVMAQLIATVQAVQS
Subjt:  AVQYANVMAQLIATVQAVQS

TrEMBL top hitse value%identityAlignment
A0A0A0LHQ1 Mediator of RNA polymerase II transcription subunit 201.6e-11695.45Show/hide
Query:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYRPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQTIMEK
        MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFY+PILRDQN PAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQ IMEK
Subjt:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYRPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQTIMEK

Query:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNHSENLRGIVMEMEYLPISSMEKSRQLMEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT
        LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPN+SENLRGIVME+EYLPISSMEKSRQ+MEEFF+VWQEAMSKSSLPGRFMHIE NFAEYGLSDYYT QHT
Subjt:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNHSENLRGIVMEMEYLPISSMEKSRQLMEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT

Query:  AVQYANVMAQLIATVQAVQS
        AVQY NVMAQLIATVQAVQS
Subjt:  AVQYANVMAQLIATVQAVQS

A0A1S3CAW6 Mediator of RNA polymerase II transcription subunit 209.7e-11795Show/hide
Query:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYRPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQTIMEK
        MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFY+PILRDQN PAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQ IMEK
Subjt:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYRPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQTIMEK

Query:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNHSENLRGIVMEMEYLPISSMEKSRQLMEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT
        LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPN+SENLRGIVME+EYLPISSMEKSRQ+M+EFF+VWQEAMSKSSLPGRFMHIE NFAEYGLSD+YTPQHT
Subjt:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNHSENLRGIVMEMEYLPISSMEKSRQLMEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT

Query:  AVQYANVMAQLIATVQAVQS
        AVQY NVMAQLIATVQAVQS
Subjt:  AVQYANVMAQLIATVQAVQS

A0A5D3CH02 Mediator of RNA polymerase II transcription subunit 209.7e-11795Show/hide
Query:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYRPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQTIMEK
        MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFY+PILRDQN PAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQ IMEK
Subjt:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYRPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQTIMEK

Query:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNHSENLRGIVMEMEYLPISSMEKSRQLMEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT
        LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPN+SENLRGIVME+EYLPISSMEKSRQ+M+EFF+VWQEAMSKSSLPGRFMHIE NFAEYGLSD+YTPQHT
Subjt:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNHSENLRGIVMEMEYLPISSMEKSRQLMEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT

Query:  AVQYANVMAQLIATVQAVQS
        AVQY NVMAQLIATVQAVQS
Subjt:  AVQYANVMAQLIATVQAVQS

A0A6J1G4U3 Mediator of RNA polymerase II transcription subunit 206.3e-11694.55Show/hide
Query:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYRPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQTIMEK
        MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFY+PILRD N+ A EFPRDFLGIS+PEQPNKYYLIIRGQRIVLEADFTIQ IMEK
Subjt:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYRPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQTIMEK

Query:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNHSENLRGIVMEMEYLPISSMEKSRQLMEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT
        LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPN+SENLRGIVME+EYLPISSMEKS+Q+MEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYT QHT
Subjt:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNHSENLRGIVMEMEYLPISSMEKSRQLMEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT

Query:  AVQYANVMAQLIATVQAVQS
        AVQYANVMAQLIATVQAVQS
Subjt:  AVQYANVMAQLIATVQAVQS

A0A6J1KEU1 Mediator of RNA polymerase II transcription subunit 206.3e-11694.55Show/hide
Query:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYRPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQTIMEK
        MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFY+PILRD N+ A EFPRDFLGIS+PEQPNKYYLIIRGQRIVLEADFTIQ IMEK
Subjt:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYRPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQTIMEK

Query:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNHSENLRGIVMEMEYLPISSMEKSRQLMEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT
        LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPN+SENLRGIVME+EYLPISSMEKS+Q+MEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYT QHT
Subjt:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNHSENLRGIVMEMEYLPISSMEKSRQLMEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT

Query:  AVQYANVMAQLIATVQAVQS
        AVQYANVMAQLIATVQAVQS
Subjt:  AVQYANVMAQLIATVQAVQS

SwissProt top hitse value%identityAlignment
Q17LR9 Mediator of RNA polymerase II transcription subunit 201.6e-0425.9Show/hide
Query:  EQPNKYYLII--RGQRIVLEADFTIQTIMEKLQ---SYKLRVALNFEGFQYQLGDFQLRVGKVVPNHSENLRGIVMEMEYLPISSMEKSRQLMEEFFEVW
        EQP   + I+    ++I L  D     +M ++    + K +  +  +G +++ GDF +++G V    S+N +G+++E+EY P        +LM EF + +
Subjt:  EQPNKYYLII--RGQRIVLEADFTIQTIMEKLQ---SYKLRVALNFEGFQYQLGDFQLRVGKVVPNHSENLRGIVMEMEYLPISSMEKSRQLMEEFFEVW

Query:  QEAMSKSSLPGRF-MHIEPNFAEYGLSDYYTPQHTAVQY
          +   +++P  F   I  N      +D Y P  T  QY
Subjt:  QEAMSKSSLPGRF-MHIEPNFAEYGLSDYYTPQHTAVQY

Q54FL3 Putative mediator of RNA polymerase II transcription subunit 202.9e-0928.93Show/hide
Query:  LNEVSQCVESIHGVKGGKWKATLTFYRPILRD-QNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQTIMEKLQSYKLRVALNFEGFQYQLG
        L E+++ +E + G+K        + Y   + D  NL     PR+F  +   E+P K + + R    ++E D  + +I+EK  SYK R        +Y+LG
Subjt:  LNEVSQCVESIHGVKGGKWKATLTFYRPILRD-QNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQTIMEKLQSYKLRVALNFEGFQYQLG

Query:  DFQLRVGKVVPNHSENLRGIVMEMEY----LPISSMEKSRQLMEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDY------YTPQHTAVQYANV
        DF +RVG +V      +RGI++E+EY     P++S     +L+ EF          +   G F   EP    +  S Y      Y+  HT+ QY N+
Subjt:  DFQLRVGKVVPNHSENLRGIVMEMEY----LPISSMEKSRQLMEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDY------YTPQHTAVQYANV

Q6NPF4 Mediator of RNA polymerase II transcription subunit 20a1.0e-9173.97Show/hide
Query:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYRPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQTIMEK
        MP+KWVLHWQPN GSTV+SQILNE +QCVESI+GVK G+WKATL +Y+P+L+DQ     EFPRDFLGISL +QPNKYY IIR QRIVLEAD +IQ IMEK
Subjt:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYRPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQTIMEK

Query:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNHSENLRGIVMEMEYLPISSMEKSRQLMEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT
        LQSYK +VAL F+GFQYQLGDF+LRVGKVVP HSEN+RGIVME+EYLPISSMEK++++MEEF E+W EA++K SLPG+F++I+ NF E+GL D YTPQHT
Subjt:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNHSENLRGIVMEMEYLPISSMEKSRQLMEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT

Query:  AVQYANVMAQLIATVQAVQ
        AV+YA VMA +IATVQAV+
Subjt:  AVQYANVMAQLIATVQAVQ

Q7Q6Y4 Mediator of RNA polymerase II transcription subunit 202.1e-0426.24Show/hide
Query:  EQPNKYYLII--RGQRIVLEADFTIQTIMEKL---QSYKLRVALNFEGFQYQLGDFQLRVGKVVPNHSENLRGIVMEMEYLPISSMEKSRQLMEEFFEVW
        EQP   + I+    ++I L  D     +M ++    + K +  +  +G +++ GDF +++G V    S+N +G+++E+EY P        +LM EF + +
Subjt:  EQPNKYYLII--RGQRIVLEADFTIQTIMEKL---QSYKLRVALNFEGFQYQLGDFQLRVGKVVPNHSENLRGIVMEMEYLPISSMEKSRQLMEEFFEVW

Query:  QEAMSKSSLPGRFMH---IEPNFAEYGLSDYYTPQHTAVQY
          +   +S+P  F     I PN ++   ++ Y P  T  QY
Subjt:  QEAMSKSSLPGRFMH---IEPNFAEYGLSDYYTPQHTAVQY

Q9M0S0 Mediator of RNA polymerase II transcription subunit 20b1.1e-8266.36Show/hide
Query:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYRPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQTIMEK
        MP+KW+LHWQPN GST +SQILNEV+Q +ES++GVK G WKATL +Y+P+L+DQ    AEFPR+F+GISLPE+P+KYY +IR QRIV+EAD +IQ IME 
Subjt:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYRPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQTIMEK

Query:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNHSENLRGIVMEMEYLPISSMEKSRQLMEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT
        LQSYK +++  FEG +YQLGDF+LRVGKVVP H+E +RG+VME+EYLPISSM  +++LMEEF E+WQEAMSK SLPG+F++ E NF ++GL D YTPQHT
Subjt:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNHSENLRGIVMEMEYLPISSMEKSRQLMEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT

Query:  AVQYANVMAQLIATVQA
        AV YA  MA L+A +QA
Subjt:  AVQYANVMAQLIATVQA

Arabidopsis top hitse value%identityAlignment
AT2G28020.1 BEST Arabidopsis thaliana protein match is: TATA-binding related factor (TRF) of subunit 20 of Mediator complex (TAIR:AT2G28230.1)3.0e-1763.24Show/hide
Query:  MEKSRQLMEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHTAVQ-YANVMAQLIATVQAV
        ME +R++MEEF E+W EA++K SLPG+F++ + NF E+GL D YTPQHTAV+ YA VMA +IATVQAV
Subjt:  MEKSRQLMEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHTAVQ-YANVMAQLIATVQAV

AT2G28230.1 TATA-binding related factor (TRF) of subunit 20 of Mediator complex7.4e-9373.97Show/hide
Query:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYRPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQTIMEK
        MP+KWVLHWQPN GSTV+SQILNE +QCVESI+GVK G+WKATL +Y+P+L+DQ     EFPRDFLGISL +QPNKYY IIR QRIVLEAD +IQ IMEK
Subjt:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYRPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQTIMEK

Query:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNHSENLRGIVMEMEYLPISSMEKSRQLMEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT
        LQSYK +VAL F+GFQYQLGDF+LRVGKVVP HSEN+RGIVME+EYLPISSMEK++++MEEF E+W EA++K SLPG+F++I+ NF E+GL D YTPQHT
Subjt:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNHSENLRGIVMEMEYLPISSMEKSRQLMEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT

Query:  AVQYANVMAQLIATVQAVQ
        AV+YA VMA +IATVQAV+
Subjt:  AVQYANVMAQLIATVQAVQ

AT4G09070.1 TATA-binding related factor (TRF) of subunit 20 of Mediator complex8.2e-8466.36Show/hide
Query:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYRPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQTIMEK
        MP+KW+LHWQPN GST +SQILNEV+Q +ES++GVK G WKATL +Y+P+L+DQ    AEFPR+F+GISLPE+P+KYY +IR QRIV+EAD +IQ IME 
Subjt:  MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYRPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQTIMEK

Query:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNHSENLRGIVMEMEYLPISSMEKSRQLMEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT
        LQSYK +++  FEG +YQLGDF+LRVGKVVP H+E +RG+VME+EYLPISSM  +++LMEEF E+WQEAMSK SLPG+F++ E NF ++GL D YTPQHT
Subjt:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNHSENLRGIVMEMEYLPISSMEKSRQLMEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT

Query:  AVQYANVMAQLIATVQA
        AV YA  MA L+A +QA
Subjt:  AVQYANVMAQLIATVQA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGCTAAAATGGGTTTTGCATTGGCAACCGAATGCCGGCAGCACTGTTAACAGTCAGATCCTCAACGAAGTTTCTCAATGTGTTGAGAGTATCCATGGCGTTAAAGG
GGGCAAGTGGAAAGCTACTCTCACCTTTTACAGGCCCATCTTACGAGACCAAAACTTACCGGCGGCCGAGTTCCCGCGCGACTTTCTCGGAATCTCGCTGCCGGAGCAAC
CAAACAAGTATTATCTTATAATCCGTGGCCAACGGATCGTCTTAGAAGCTGATTTTACGATTCAAACTATAATGGAGAAGTTGCAGTCTTACAAATTGCGCGTTGCTCTC
AATTTCGAGGGGTTCCAATACCAATTAGGGGATTTCCAACTGAGAGTGGGAAAAGTTGTTCCCAACCATTCTGAGAATTTGAGAGGAATAGTTATGGAGATGGAGTATCT
CCCAATTTCTTCAATGGAGAAATCAAGACAGTTGATGGAGGAATTCTTCGAGGTATGGCAAGAAGCCATGTCAAAAAGTTCATTGCCAGGTCGTTTCATGCACATAGAAC
CAAACTTTGCAGAATATGGACTGTCGGATTACTACACTCCTCAACACACAGCCGTCCAGTATGCTAATGTTATGGCGCAACTAATCGCAACAGTTCAAGCAGTTCAATCA
TTCAACATAGAATGGAATGGACGCTACAGTGCTGTGAAAGCAGAAAAGACTCAACAAACACAACATCATGGTGGACGCTGCTTTTATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCGCTAAAATGGGTTTTGCATTGGCAACCGAATGCCGGCAGCACTGTTAACAGTCAGATCCTCAACGAAGTTTCTCAATGTGTTGAGAGTATCCATGGCGTTAAAGG
GGGCAAGTGGAAAGCTACTCTCACCTTTTACAGGCCCATCTTACGAGACCAAAACTTACCGGCGGCCGAGTTCCCGCGCGACTTTCTCGGAATCTCGCTGCCGGAGCAAC
CAAACAAGTATTATCTTATAATCCGTGGCCAACGGATCGTCTTAGAAGCTGATTTTACGATTCAAACTATAATGGAGAAGTTGCAGTCTTACAAATTGCGCGTTGCTCTC
AATTTCGAGGGGTTCCAATACCAATTAGGGGATTTCCAACTGAGAGTGGGAAAAGTTGTTCCCAACCATTCTGAGAATTTGAGAGGAATAGTTATGGAGATGGAGTATCT
CCCAATTTCTTCAATGGAGAAATCAAGACAGTTGATGGAGGAATTCTTCGAGGTATGGCAAGAAGCCATGTCAAAAAGTTCATTGCCAGGTCGTTTCATGCACATAGAAC
CAAACTTTGCAGAATATGGACTGTCGGATTACTACACTCCTCAACACACAGCCGTCCAGTATGCTAATGTTATGGCGCAACTAATCGCAACAGTTCAAGCAGTTCAATCA
TTCAACATAGAATGGAATGGACGCTACAGTGCTGTGAAAGCAGAAAAGACTCAACAAACACAACATCATGGTGGACGCTGCTTTTATTAA
Protein sequenceShow/hide protein sequence
MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYRPILRDQNLPAAEFPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQTIMEKLQSYKLRVAL
NFEGFQYQLGDFQLRVGKVVPNHSENLRGIVMEMEYLPISSMEKSRQLMEEFFEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHTAVQYANVMAQLIATVQAVQS
FNIEWNGRYSAVKAEKTQQTQHHGGRCFY