; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc09g00140 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g00140
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionPhotosystem II reaction center Psb28 protein
Genome locationchr9:159486..162399
RNA-Seq ExpressionMoc09g00140
SyntenyMoc09g00140
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009654 - photosystem II oxygen evolving complex (cellular component)
InterPro domainsIPR005610 - Photosystem II Psb28, class 1
IPR038676 - Photosystem II Psb28, class 1 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008459971.1 PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic [Cucumis melo]6.4e-5674.56Show/hide
Query:  MATLHSLASTTSTASSHLHLLPPTKL----TLHRSSLSTFHGRSLTLKLTLGSASRCQTLRRRRF------CIAMVQPKIQFIQGTDEQTVPDVRLTKSR
        MA+L SLASTTS +S HL     TKL    +LH S+ S+FHGRSL+L     S ++C TL RR +       I MVQPKIQFIQGTDEQTVPDVRLTKSR
Subjt:  MATLHSLASTTSTASSHLHLLPPTKL----TLHRSSLSTFHGRSLTLKLTLGSASRCQTLRRRRF------CIAMVQPKIQFIQGTDEQTVPDVRLTKSR

Query:  DGSNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDR
        DG+NGMAIFRF+QPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKF+NGKPAGIEAKYVMRTPREWDR
Subjt:  DGSNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDR

XP_011656766.1 photosystem II reaction center PSB28 protein, chloroplastic [Cucumis sativus]1.2e-5472.19Show/hide
Query:  MATLHSLASTTSTASSHL----HLLPPTKLTLHRSSLSTFHGRSLTLKLTLGSASRCQTLRRRRF------CIAMVQPKIQFIQGTDEQTVPDVRLTKSR
        MA+L SLASTTS +S HL       P    +LH S+ S+FHGRSL+L     S ++C TL RR +       I MV PKIQFIQGTDEQT+PDVRLTKSR
Subjt:  MATLHSLASTTSTASSHL----HLLPPTKLTLHRSSLSTFHGRSLTLKLTLGSASRCQTLRRRRF------CIAMVQPKIQFIQGTDEQTVPDVRLTKSR

Query:  DGSNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDR
        DG+NGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEG+IQSVDVNAKF+NGKPAGIEAKYVMRTPREWDR
Subjt:  DGSNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDR

XP_022157494.1 photosystem II reaction center Psb28 protein [Momordica charantia]4.4e-81100Show/hide
Query:  MATLHSLASTTSTASSHLHLLPPTKLTLHRSSLSTFHGRSLTLKLTLGSASRCQTLRRRRFCIAMVQPKIQFIQGTDEQTVPDVRLTKSRDGSNGMAIFR
        MATLHSLASTTSTASSHLHLLPPTKLTLHRSSLSTFHGRSLTLKLTLGSASRCQTLRRRRFCIAMVQPKIQFIQGTDEQTVPDVRLTKSRDGSNGMAIFR
Subjt:  MATLHSLASTTSTASSHLHLLPPTKLTLHRSSLSTFHGRSLTLKLTLGSASRCQTLRRRRFCIAMVQPKIQFIQGTDEQTVPDVRLTKSRDGSNGMAIFR

Query:  FEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDR
        FEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDR
Subjt:  FEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDR

XP_023514182.1 photosystem II reaction center PSB28 protein, chloroplastic-like [Cucurbita pepo subsp. pepo]6.0e-5471.1Show/hide
Query:  MATLHSLASTTSTASSHLHLLPPTKL----TLHRSSLSTFHGRSLTLKLTLGSASRCQTLRRRRF----------CIAMVQPKIQFIQGTDEQTVPDVRL
        MATL SLAST      HLH    TK+    TLHRS+ S F+GRSL++     S  +CQTL RRRF           + MV+PKIQFIQGTDEQTVPDVRL
Subjt:  MATLHSLASTTSTASSHLHLLPPTKL----TLHRSSLSTFHGRSLTLKLTLGSASRCQTLRRRRF----------CIAMVQPKIQFIQGTDEQTVPDVRL

Query:  TKSRDGSNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDR
        TKSRDG+NGMAIF+F++PSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKF+NGKPAGIEAKYVMRTPREWDR
Subjt:  TKSRDGSNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDR

XP_038875127.1 photosystem II reaction center Psb28 protein [Benincasa hispida]7.1e-5576.19Show/hide
Query:  MATLHSLASTTSTASSHL-HLLPPTKL----TLHRSSLSTFHGRSLTLKLTLGSASRCQTLRRRR----FCIAMVQPKIQFIQGTDEQTVPDVRLTKSRD
        MA L SL S TS AS H+ H  P TK+    TLHRS+ S+FHGRSL+L     SA  CQTL  R       I MVQPKIQFIQGTDEQTVPDVRLTKSRD
Subjt:  MATLHSLASTTSTASSHL-HLLPPTKL----TLHRSSLSTFHGRSLTLKLTLGSASRCQTLRRRR----FCIAMVQPKIQFIQGTDEQTVPDVRLTKSRD

Query:  GSNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDR
        G+NGMAIFRF+QPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKF+NGKPAGIEAKYVMRTPREWDR
Subjt:  GSNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDR

TrEMBL top hitse value%identityAlignment
A0A0A0K9C2 Photosystem II reaction center Psb28 protein5.8e-5572.19Show/hide
Query:  MATLHSLASTTSTASSHL----HLLPPTKLTLHRSSLSTFHGRSLTLKLTLGSASRCQTLRRRRF------CIAMVQPKIQFIQGTDEQTVPDVRLTKSR
        MA+L SLASTTS +S HL       P    +LH S+ S+FHGRSL+L     S ++C TL RR +       I MV PKIQFIQGTDEQT+PDVRLTKSR
Subjt:  MATLHSLASTTSTASSHL----HLLPPTKLTLHRSSLSTFHGRSLTLKLTLGSASRCQTLRRRRF------CIAMVQPKIQFIQGTDEQTVPDVRLTKSR

Query:  DGSNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDR
        DG+NGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEG+IQSVDVNAKF+NGKPAGIEAKYVMRTPREWDR
Subjt:  DGSNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDR

A0A1S3CCN2 Photosystem II reaction center Psb28 protein3.1e-5674.56Show/hide
Query:  MATLHSLASTTSTASSHLHLLPPTKL----TLHRSSLSTFHGRSLTLKLTLGSASRCQTLRRRRF------CIAMVQPKIQFIQGTDEQTVPDVRLTKSR
        MA+L SLASTTS +S HL     TKL    +LH S+ S+FHGRSL+L     S ++C TL RR +       I MVQPKIQFIQGTDEQTVPDVRLTKSR
Subjt:  MATLHSLASTTSTASSHLHLLPPTKL----TLHRSSLSTFHGRSLTLKLTLGSASRCQTLRRRRF------CIAMVQPKIQFIQGTDEQTVPDVRLTKSR

Query:  DGSNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDR
        DG+NGMAIFRF+QPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKF+NGKPAGIEAKYVMRTPREWDR
Subjt:  DGSNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDR

A0A5A7TA18 Photosystem II reaction center Psb28 protein3.1e-5674.56Show/hide
Query:  MATLHSLASTTSTASSHLHLLPPTKL----TLHRSSLSTFHGRSLTLKLTLGSASRCQTLRRRRF------CIAMVQPKIQFIQGTDEQTVPDVRLTKSR
        MA+L SLASTTS +S HL     TKL    +LH S+ S+FHGRSL+L     S ++C TL RR +       I MVQPKIQFIQGTDEQTVPDVRLTKSR
Subjt:  MATLHSLASTTSTASSHLHLLPPTKL----TLHRSSLSTFHGRSLTLKLTLGSASRCQTLRRRRF------CIAMVQPKIQFIQGTDEQTVPDVRLTKSR

Query:  DGSNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDR
        DG+NGMAIFRF+QPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKF+NGKPAGIEAKYVMRTPREWDR
Subjt:  DGSNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDR

A0A6J1DWM5 Photosystem II reaction center Psb28 protein2.1e-81100Show/hide
Query:  MATLHSLASTTSTASSHLHLLPPTKLTLHRSSLSTFHGRSLTLKLTLGSASRCQTLRRRRFCIAMVQPKIQFIQGTDEQTVPDVRLTKSRDGSNGMAIFR
        MATLHSLASTTSTASSHLHLLPPTKLTLHRSSLSTFHGRSLTLKLTLGSASRCQTLRRRRFCIAMVQPKIQFIQGTDEQTVPDVRLTKSRDGSNGMAIFR
Subjt:  MATLHSLASTTSTASSHLHLLPPTKLTLHRSSLSTFHGRSLTLKLTLGSASRCQTLRRRRFCIAMVQPKIQFIQGTDEQTVPDVRLTKSRDGSNGMAIFR

Query:  FEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDR
        FEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDR
Subjt:  FEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDR

A0A6J1KY50 Photosystem II reaction center Psb28 protein5.0e-5471.1Show/hide
Query:  MATLHSLASTTSTASSHLHLLPPTKL----TLHRSSLSTFHGRSLTLKLTLGSASRCQTLRRRR----------FCIAMVQPKIQFIQGTDEQTVPDVRL
        MATL SLAST      HLH    TK+    TLHRS+ S F+GRSL++     S  +CQTL RRR            + MVQPKIQFIQGTDEQTVPDVRL
Subjt:  MATLHSLASTTSTASSHLHLLPPTKL----TLHRSSLSTFHGRSLTLKLTLGSASRCQTLRRRR----------FCIAMVQPKIQFIQGTDEQTVPDVRL

Query:  TKSRDGSNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDR
        TKSRDG+NGMAIF+F++PSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKF+NGKPAGIEAKYVMRTPREWDR
Subjt:  TKSRDGSNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDR

SwissProt top hitse value%identityAlignment
A0T0H5 Photosystem II reaction center Psb28 protein1.3e-2756.84Show/hide
Query:  VQPKIQFIQGTDEQTVPDVRLTKSRDGSNGMAIFRFEQPSVFD-SSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDR
        ++ KIQFI+G DE+ +PDVRLT+S+DGS G A FRF+ P++ D ++A+ G+ITG Y+IDEEG++++ DVNA+FVNGKP  IE+ Y+M++P  WDR
Subjt:  VQPKIQFIQGTDEQTVPDVRLTKSRDGSNGMAIFRFEQPSVFD-SSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDR

O78418 Photosystem II reaction center Psb28 protein4.2e-2660.44Show/hide
Query:  IQFIQGTDEQTVPDVRLTKSRDGSNGMAIFRFEQPSVFDSSAEV-GDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDR
        IQFIQG +E  +PDVRLT+SRDGS G A FRF  P V ++ + V G+ITG Y+IDEEG + + DVNA+FVNGKP GIEA Y+M++  +WDR
Subjt:  IQFIQGTDEQTVPDVRLTKSRDGSNGMAIFRFEQPSVFDSSAEV-GDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDR

P49508 Photosystem II reaction center Psb28 protein2.2e-2756.84Show/hide
Query:  VQPKIQFIQGTDEQTVPDVRLTKSRDGSNGMAIFRFEQPSVFD-SSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDR
        ++ KIQFI+G DE+ +PDVRLT+SRDGS G A FRF+ P++ D S+A+ G+ITG Y+ID+EG +++ DVNA+F+NGKP  IE+ Y+M++P  WDR
Subjt:  VQPKIQFIQGTDEQTVPDVRLTKSRDGSNGMAIFRFEQPSVFD-SSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDR

Q0JG75 Photosystem II reaction center PSB28 protein, chloroplastic4.2e-4270.63Show/hide
Query:  STFHGRSLTLKLTLGSASRCQTLRRRRFCIAMVQPKIQFIQGTDEQTVPDVRLTKSRDGSNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDV
        S+F G SL  + T   AS  ++    +  +   +P IQFIQGTDEQT+PDVRLTKSRDG+NG+AIF F+QPSVFDSSAE+GDITGFYMID+EGV+QSVDV
Subjt:  STFHGRSLTLKLTLGSASRCQTLRRRRFCIAMVQPKIQFIQGTDEQTVPDVRLTKSRDGSNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDV

Query:  NAKFVNGKPAGIEAKYVMRTPREWDR
        +AKFVNGKPA IEAKYVMRTPREWDR
Subjt:  NAKFVNGKPAGIEAKYVMRTPREWDR

Q8W0Y8 Photosystem II reaction center PSB28 protein, chloroplastic7.4e-3954.27Show/hide
Query:  MATLHSLASTTSTASSHLHLLPPTKLTLHRSSL-----STFHGRSLTLKLTLGSASRCQTLRRRRFCIAMVQPKIQFIQGTDEQTVPDVRLTKSRDGSNG
        MA + S+ S TS   S  + +P + + L   S+     S+F G  ++L     S+       +      MV+P +QFIQGTDE T+PDV+LT+SRDGSNG
Subjt:  MATLHSLASTTSTASSHLHLLPPTKLTLHRSSL-----STFHGRSLTLKLTLGSASRCQTLRRRRFCIAMVQPKIQFIQGTDEQTVPDVRLTKSRDGSNG

Query:  MAIFRFEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDR
        MA+F F+QPSVFDSS EVG+ITG YMIDEEGVIQS DVNA+FVNGKP GI AK++MR+P+EWDR
Subjt:  MAIFRFEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDR

Arabidopsis top hitse value%identityAlignment
AT4G28660.1 photosystem II reaction center PSB28 protein5.3e-4054.27Show/hide
Query:  MATLHSLASTTSTASSHLHLLPPTKLTLHRSSL-----STFHGRSLTLKLTLGSASRCQTLRRRRFCIAMVQPKIQFIQGTDEQTVPDVRLTKSRDGSNG
        MA + S+ S TS   S  + +P + + L   S+     S+F G  ++L     S+       +      MV+P +QFIQGTDE T+PDV+LT+SRDGSNG
Subjt:  MATLHSLASTTSTASSHLHLLPPTKLTLHRSSL-----STFHGRSLTLKLTLGSASRCQTLRRRRFCIAMVQPKIQFIQGTDEQTVPDVRLTKSRDGSNG

Query:  MAIFRFEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDR
        MA+F F+QPSVFDSS EVG+ITG YMIDEEGVIQS DVNA+FVNGKP GI AK++MR+P+EWDR
Subjt:  MAIFRFEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDR

AT4G28660.2 photosystem II reaction center PSB28 protein1.1e-4077.89Show/hide
Query:  MVQPKIQFIQGTDEQTVPDVRLTKSRDGSNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDR
        MV+P +QFIQGTDE T+PDV+LT+SRDGSNGMA+F F+QPSVFDSS EVG+ITG YMIDEEGVIQS DVNA+FVNGKP GI AK++MR+P+EWDR
Subjt:  MVQPKIQFIQGTDEQTVPDVRLTKSRDGSNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACTCTGCATTCTCTGGCGTCCACCACCTCCACTGCTTCTTCGCATCTGCATCTCCTTCCGCCCACCAAATTAACCCTCCACCGGAGCTCCCTCTCCACGTTCCA
CGGCCGCTCTCTCACTCTCAAACTCACTCTCGGGAGTGCGTCCAGATGCCAGACGCTGAGGCGGCGCAGATTCTGCATCGCGATGGTGCAGCCGAAGATTCAGTTCATCC
AGGGCACCGACGAGCAGACGGTGCCCGACGTGAGGCTGACCAAATCCCGGGACGGGAGCAACGGGATGGCCATATTCAGGTTCGAGCAGCCGTCGGTGTTCGACTCCTCG
GCGGAGGTTGGGGACATCACGGGCTTCTACATGATCGACGAGGAAGGGGTGATTCAGTCGGTGGATGTGAACGCCAAGTTCGTCAACGGGAAGCCCGCCGGAATCGAGGC
CAAGTACGTGATGCGCACCCCCAGGGAGTGGGACAGGAGGCTATCGTGTGCCCTCGCCTGCGGCAACGGACCCATATGTGGTGTGGGAGTTGCAAGGGGAGCTATGCGTG
ATGCTCAGCAACAGTTGTGCAATTTGCCTTCTGCACATCCATGCCTCACTGACATTGAAGCTCCTCTGTCGTTTATACCTCCCGACCTTGCCCGCTCGAACGCCCCACCG
CCTGCTTCCATCACTTCTTCAATGTTGTGTTTGATGTTTCTTCCTTCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGACTCTGCATTCTCTGGCGTCCACCACCTCCACTGCTTCTTCGCATCTGCATCTCCTTCCGCCCACCAAATTAACCCTCCACCGGAGCTCCCTCTCCACGTTCCA
CGGCCGCTCTCTCACTCTCAAACTCACTCTCGGGAGTGCGTCCAGATGCCAGACGCTGAGGCGGCGCAGATTCTGCATCGCGATGGTGCAGCCGAAGATTCAGTTCATCC
AGGGCACCGACGAGCAGACGGTGCCCGACGTGAGGCTGACCAAATCCCGGGACGGGAGCAACGGGATGGCCATATTCAGGTTCGAGCAGCCGTCGGTGTTCGACTCCTCG
GCGGAGGTTGGGGACATCACGGGCTTCTACATGATCGACGAGGAAGGGGTGATTCAGTCGGTGGATGTGAACGCCAAGTTCGTCAACGGGAAGCCCGCCGGAATCGAGGC
CAAGTACGTGATGCGCACCCCCAGGGAGTGGGACAGGAGGCTATCGTGTGCCCTCGCCTGCGGCAACGGACCCATATGTGGTGTGGGAGTTGCAAGGGGAGCTATGCGTG
ATGCTCAGCAACAGTTGTGCAATTTGCCTTCTGCACATCCATGCCTCACTGACATTGAAGCTCCTCTGTCGTTTATACCTCCCGACCTTGCCCGCTCGAACGCCCCACCG
CCTGCTTCCATCACTTCTTCAATGTTGTGTTTGATGTTTCTTCCTTCCTAG
Protein sequenceShow/hide protein sequence
MATLHSLASTTSTASSHLHLLPPTKLTLHRSSLSTFHGRSLTLKLTLGSASRCQTLRRRRFCIAMVQPKIQFIQGTDEQTVPDVRLTKSRDGSNGMAIFRFEQPSVFDSS
AEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDRRLSCALACGNGPICGVGVARGAMRDAQQQLCNLPSAHPCLTDIEAPLSFIPPDLARSNAPP
PASITSSMLCLMFLPS