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Moc09g00560 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g00560
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionthioredoxin-like protein 4B
Genome locationchr9:582858..586107
RNA-Seq ExpressionMoc09g00560
SyntenyMoc09g00560
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
InterPro domainsIPR004123 - Dim1 family
IPR036249 - Thioredoxin-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575968.1 Thioredoxin-like protein 4B, partial [Cucurbita argyrosperma subsp. sororia]1.2e-7697.35Show/hide
Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLT KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDI+LIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDL
        HTKWIGAFH+KQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKD+
Subjt:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDL

XP_004139666.1 thioredoxin-like protein 4B [Cucumis sativus]7.9e-7694.7Show/hide
Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLTKK EVDS+IRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFAS+ALVDIDSEEIQVY+KYFDI+LIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDL
        HTKW+GAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQL YKD+
Subjt:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDL

XP_022152114.1 thioredoxin-like protein 4B [Momordica charantia]2.2e-78100Show/hide
Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDL
        HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDL
Subjt:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDL

XP_022953679.1 thioredoxin-like protein 4B [Cucurbita moschata]4.7e-7696.69Show/hide
Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLT KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDI+LIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDL
        HTKWIGAFH+KQDFIDVVEAIFRGAMKGKLIV+CPLPPERIPKYQLLYKD+
Subjt:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDL

XP_022991475.1 thioredoxin-like protein 4B [Cucurbita maxima]2.1e-7696.69Show/hide
Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLT KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEE+QVYIKYFDI+LIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDL
        HTKWIGAFH+KQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKD+
Subjt:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDL

TrEMBL top hitse value%identityAlignment
A0A1S3BH38 thioredoxin-like protein 4B7.3e-7593.38Show/hide
Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLTKK EVDS+IRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEE+QVY+KYFDI+LIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDL
        HTKW+GAFHQKQ+FIDVVEAIFRGAMKGKLIVNCPLPPE+IPKYQLL+KD+
Subjt:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDL

A0A6J1DGN8 thioredoxin-like protein 4B1.1e-78100Show/hide
Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDL
        HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDL
Subjt:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDL

A0A6J1GQC5 thioredoxin-like protein 4B2.3e-7696.69Show/hide
Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLT KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDI+LIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDL
        HTKWIGAFH+KQDFIDVVEAIFRGAMKGKLIV+CPLPPERIPKYQLLYKD+
Subjt:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDL

A0A6J1JT18 thioredoxin-like protein 4B1.0e-7696.69Show/hide
Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLT KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEE+QVYIKYFDI+LIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDL
        HTKWIGAFH+KQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKD+
Subjt:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDL

A0A6P4ATD0 thioredoxin-like protein 4B1.5e-7289.4Show/hide
Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTAD
        MSYLL TLTKKREVDSII+DTIDKVL+LRFGR SDSVCLLLDD+L+K AREVSKFA+IALVDIDSE++QVY+ YFDI+LIPST+FFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDL
        HTKW+GAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKD+
Subjt:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDL

SwissProt top hitse value%identityAlignment
P83876 Thioredoxin-like protein 4A1.5e-1635.56Show/hide
Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTAD
        MSY+L  L    +VD  I    D+V+++RFG   D  C+ +D++L   A +V  FA I LVDI   E+  + K +++    + +FFF   H+ +D GT +
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCP
        + K   A   KQ+ +D++E ++RGA KG+ +V  P
Subjt:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCP

P83877 Thioredoxin-like protein 4A1.5e-1635.56Show/hide
Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTAD
        MSY+L  L    +VD  I    D+V+++RFG   D  C+ +D++L   A +V  FA I LVDI   E+  + K +++    + +FFF   H+ +D GT +
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCP
        + K   A   KQ+ +D++E ++RGA KG+ +V  P
Subjt:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCP

Q8BUH1 Thioredoxin-like protein 4B1.1e-4660.26Show/hide
Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTAD
        MS+LL  LT K+EVD  I+ T +KVL+LRFGR  D VCL LDDIL+K + ++SK A+I LVD+D     VY +YFDIS IPSTVFFFN  HMK+D G+ D
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDL
        HTK++G+F  KQDFID++E I+RGAM+GKLIV  P+ P+ +PKY LLY+D+
Subjt:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDL

Q9FE62 Thioredoxin-like protein YLS81.9e-1637.96Show/hide
Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDI-DSEEIQVYIKYFDISLIPSTV-FFFNAHHMKMDSGT
        MSYLL  L     VD  I    ++++++RFG   D  C+ +D++LA  A  +  FA I LVDI +  +     + +D    PSTV FFF   H+ +D GT
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDI-DSEEIQVYIKYFDISLIPSTV-FFFNAHHMKMDSGT

Query:  ADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCP
         ++ K   A   KQ+FID++E ++RGA KG+ +V  P
Subjt:  ADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCP

Q9NX01 Thioredoxin-like protein 4B4.7e-4760.93Show/hide
Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTAD
        MS+LL  LT K+EVD  I+ T +KVL+LRFGR  D VCL LDDIL+K + ++SK A+I LVD+D  +  VY +YFDIS IPSTVFFFN  HMK+D G+ D
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDL
        HTK++G+F  KQDFID++E I+RGAM+GKLIV  P+ P+ IPKY LLY+D+
Subjt:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDL

Arabidopsis top hitse value%identityAlignment
AT3G24730.1 mRNA splicing factor, thioredoxin-like U5 snRNP3.8e-6877.48Show/hide
Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTAD
        MSYLL+TLT K E+D +IRDTID+VL+LRFGR SD+VCL  D+ILAK  R+VSKFA +ALVD+DSE++QVY+KYFDI+L PST+FFFNAHHMK+DSGTAD
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDL
        HTKW+GAFH KQDFIDVVEAI+RGAMKGK+IV CP+PPERIPKYQL+YKD+
Subjt:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDL

AT5G08290.1 mRNA splicing factor, thioredoxin-like U5 snRNP1.4e-1737.96Show/hide
Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDI-DSEEIQVYIKYFDISLIPSTV-FFFNAHHMKMDSGT
        MSYLL  L     VD  I    ++++++RFG   D  C+ +D++LA  A  +  FA I LVDI +  +     + +D    PSTV FFF   H+ +D GT
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDI-DSEEIQVYIKYFDISLIPSTV-FFFNAHHMKMDSGT

Query:  ADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCP
         ++ K   A   KQ+FID++E ++RGA KG+ +V  P
Subjt:  ADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTACCTTCTAAGGACCTTAACGAAGAAGAGAGAAGTTGATTCCATCATTAGGGACACCATTGATAAAGTCCTCATTCTCCGATTTGGTCGGTGTTCCGATTCAGT
TTGTCTCCTCCTTGATGATATTCTTGCTAAGTGCGCGCGAGAAGTGTCGAAGTTTGCTTCAATAGCACTGGTGGATATTGATTCAGAAGAAATACAGGTTTACATCAAGT
ACTTTGACATTTCTCTTATACCATCCACTGTTTTCTTCTTCAATGCTCATCATATGAAGATGGATTCAGGGACTGCAGACCATACAAAGTGGATTGGTGCTTTTCACCAA
AAGCAGGATTTCATTGATGTTGTGGAGGCAATATTTAGGGGAGCAATGAAAGGCAAGCTGATTGTGAATTGTCCATTGCCTCCAGAGCGAATTCCAAAATACCAATTATT
GTACAAGGATCTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCTACCTTCTAAGGACCTTAACGAAGAAGAGAGAAGTTGATTCCATCATTAGGGACACCATTGATAAAGTCCTCATTCTCCGATTTGGTCGGTGTTCCGATTCAGT
TTGTCTCCTCCTTGATGATATTCTTGCTAAGTGCGCGCGAGAAGTGTCGAAGTTTGCTTCAATAGCACTGGTGGATATTGATTCAGAAGAAATACAGGTTTACATCAAGT
ACTTTGACATTTCTCTTATACCATCCACTGTTTTCTTCTTCAATGCTCATCATATGAAGATGGATTCAGGGACTGCAGACCATACAAAGTGGATTGGTGCTTTTCACCAA
AAGCAGGATTTCATTGATGTTGTGGAGGCAATATTTAGGGGAGCAATGAAAGGCAAGCTGATTGTGAATTGTCCATTGCCTCCAGAGCGAATTCCAAAATACCAATTATT
GTACAAGGATCTGTAG
Protein sequenceShow/hide protein sequence
MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQ
KQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDL