CuGenDBv2

Gene ID	Moc09g00970
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Genome location	chr9:894275..897103
RNA-Seq Expression	Moc09g00970
Synteny	Moc09g00970
Gene Ontology terms	GO:0016020 - membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

CAN74381.1 hypothetical protein VITISV_007944 [Vitis vinifera]

2.2e-56

53.05

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Query:  MAKQETILTIQSFHQCSSLISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLTDKDGETIPNPQYNIWLNNDGLLTSWLLGIITEDVLATIEG
        MA  E +L+IQ+FHQCSSL+SIKL++SN LLW+SQVLPLVRSLG+  HL E++         + +   +     W +NDGLLTSWLLG++TE+V+  ++G
Subjt:  MAKQETILTIQSFHQCSSLISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLTDKDGETIPNPQYNIWLNNDGLLTSWLLGIITEDVLATIEG

Query:  TDSAYQMWKSLEEQLLAVTKENEIHLNEAILSLKKGSLSLDEYLKKTKLFCDQLAAMKKPVDDLTKVFHVARGLGAKYHGFKTAMLSKAPYPTYNEFILA
        T++AY +W SL E+LL +TKE E+ L   +  +KKG+ SLDEYL++ K  CD LAA++KPV DL K F +A+GLG KY  F+ AMLSK PYP+YN+F+LA
Subjt:  TDSAYQMWKSLEEQLLAVTKENEIHLNEAILSLKKGSLSLDEYLKKTKLFCDQLAAMKKPVDDLTKVFHVARGLGAKYHGFKTAMLSKAPYPTYNEFILA

Query:  LKAHEEEAEAEEE
        L+ HE+    E E
Subjt:  LKAHEEEAEAEEE

RVW19921.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]

1.2e-57

53.99

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Query:  MAKQETILTIQSFHQCSSLISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLTDKDGETIPNPQYNIWLNNDGLLTSWLLGIITEDVLATIEG
        MA  E +L+IQ+FHQCSSL+SIKL++SN LLW+SQVLPLVRSLG+  HL E++   E     + +   +     W +NDGLLTSWLLG++TE+V+  ++G
Subjt:  MAKQETILTIQSFHQCSSLISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLTDKDGETIPNPQYNIWLNNDGLLTSWLLGIITEDVLATIEG

Query:  TDSAYQMWKSLEEQLLAVTKENEIHLNEAILSLKKGSLSLDEYLKKTKLFCDQLAAMKKPVDDLTKVFHVARGLGAKYHGFKTAMLSKAPYPTYNEFILA
        T++AY +W SL E+LL +TKE E+ L   +  +KKG+ SLDEYL++ K  CD LAA++KPV DL KVF +A+GLG KY  F+ AMLSK PYP+YN+F+LA
Subjt:  TDSAYQMWKSLEEQLLAVTKENEIHLNEAILSLKKGSLSLDEYLKKTKLFCDQLAAMKKPVDDLTKVFHVARGLGAKYHGFKTAMLSKAPYPTYNEFILA

Query:  LKAHEEEAEAEEE
        L+ HE+    E E
Subjt:  LKAHEEEAEAEEE

RVW43526.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

3.5e-57

53.52

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Query:  MAKQETILTIQSFHQCSSLISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLTDKDGETIPNPQYNIWLNNDGLLTSWLLGIITEDVLATIEG
        MA  E +L+IQ+FHQCSSL+SIKL++SN LLW+SQVLPLVRSLG+  HL E++   +     + +   +     W +NDGLLTSWLLG++TE+V+  ++G
Subjt:  MAKQETILTIQSFHQCSSLISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLTDKDGETIPNPQYNIWLNNDGLLTSWLLGIITEDVLATIEG

Query:  TDSAYQMWKSLEEQLLAVTKENEIHLNEAILSLKKGSLSLDEYLKKTKLFCDQLAAMKKPVDDLTKVFHVARGLGAKYHGFKTAMLSKAPYPTYNEFILA
        T++AY +W SL E+LL +TKE E+ L   +  +KKG+ SLDEYL++ K  CD LAA++KPV DL KVF +A+GLG KY  F+ AMLSK PYP+YN+F+LA
Subjt:  TDSAYQMWKSLEEQLLAVTKENEIHLNEAILSLKKGSLSLDEYLKKTKLFCDQLAAMKKPVDDLTKVFHVARGLGAKYHGFKTAMLSKAPYPTYNEFILA

Query:  LKAHEEEAEAEEE
        L+ HE+    E E
Subjt:  LKAHEEEAEAEEE

RVW93768.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]

4.5e-57

53.52

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Query:  MAKQETILTIQSFHQCSSLISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLTDKDGETIPNPQYNIWLNNDGLLTSWLLGIITEDVLATIEG
        MA  E +L+IQ+FHQCSSL+SIKL++SN LLW+SQVLPLVRSLG+  HL E++   E     + +   +     W +NDGLLTSWLLG++T++V+  ++G
Subjt:  MAKQETILTIQSFHQCSSLISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLTDKDGETIPNPQYNIWLNNDGLLTSWLLGIITEDVLATIEG

Query:  TDSAYQMWKSLEEQLLAVTKENEIHLNEAILSLKKGSLSLDEYLKKTKLFCDQLAAMKKPVDDLTKVFHVARGLGAKYHGFKTAMLSKAPYPTYNEFILA
        T++AY +W SL E+LL +TKE E+ L   +  +KKG+ SLDEYL++ K  CD LAA++KPV DL KVF +A+GLG KY  F+ AMLSK PYP+YN+F+LA
Subjt:  TDSAYQMWKSLEEQLLAVTKENEIHLNEAILSLKKGSLSLDEYLKKTKLFCDQLAAMKKPVDDLTKVFHVARGLGAKYHGFKTAMLSKAPYPTYNEFILA

Query:  LKAHEEEAEAEEE
        L+ HE+    E E
Subjt:  LKAHEEEAEAEEE

XP_022154021.1 uncharacterized protein LOC111021379 [Momordica charantia]

1.6e-73

66.67

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Query:  MAKQETILTIQSFHQCSSLISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLTDKDGETIPNPQYNIWLNNDGLLTSWLLGIITEDVLATIEG
        MA  E +LT+QSFHQCSSLIS+KL+ SNYLLWKSQVLPL+R+LG+E HL E     +    K+GE+    Q   W+NNDGLLTSWLLGII EDVL  +EG
Subjt:  MAKQETILTIQSFHQCSSLISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLTDKDGETIPNPQYNIWLNNDGLLTSWLLGIITEDVLATIEG

Query:  TDSAYQMWKSLEEQLLAVTKENEIHLNEAILSLKKGSLSLDEYLKKTKLFCDQLAAMKKPVDDLTKVFHVARGLGAKYHGFKTAMLSKAPYPTYNEFILA
        T++A ++W SLEE LL +TKENEIHLNEA+L+LKKGSLS+DEY++K K  CD+L AMKKP+DDLTKVFH+ARGLG KY  F+TAMLSKAPYP+YN+F+LA
Subjt:  TDSAYQMWKSLEEQLLAVTKENEIHLNEAILSLKKGSLSLDEYLKKTKLFCDQLAAMKKPVDDLTKVFHVARGLGAKYHGFKTAMLSKAPYPTYNEFILA

Query:  LKAHEEEAEAEEE
        LKAH++    EEE
Subjt:  LKAHEEEAEAEEE

TrEMBL top hits

e value

%identity

Alignment

A0A438C9J9 Retrovirus-related Pol polyprotein from transposon RE1

5.8e-58

53.99

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Query:  MAKQETILTIQSFHQCSSLISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLTDKDGETIPNPQYNIWLNNDGLLTSWLLGIITEDVLATIEG
        MA  E +L+IQ+FHQCSSL+SIKL++SN LLW+SQVLPLVRSLG+  HL E++   E     + +   +     W +NDGLLTSWLLG++TE+V+  ++G
Subjt:  MAKQETILTIQSFHQCSSLISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLTDKDGETIPNPQYNIWLNNDGLLTSWLLGIITEDVLATIEG

Query:  TDSAYQMWKSLEEQLLAVTKENEIHLNEAILSLKKGSLSLDEYLKKTKLFCDQLAAMKKPVDDLTKVFHVARGLGAKYHGFKTAMLSKAPYPTYNEFILA
        T++AY +W SL E+LL +TKE E+ L   +  +KKG+ SLDEYL++ K  CD LAA++KPV DL KVF +A+GLG KY  F+ AMLSK PYP+YN+F+LA
Subjt:  TDSAYQMWKSLEEQLLAVTKENEIHLNEAILSLKKGSLSLDEYLKKTKLFCDQLAAMKKPVDDLTKVFHVARGLGAKYHGFKTAMLSKAPYPTYNEFILA

Query:  LKAHEEEAEAEEE
        L+ HE+    E E
Subjt:  LKAHEEEAEAEEE

A0A438E6Z5 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.7e-57

53.52

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Query:  MAKQETILTIQSFHQCSSLISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLTDKDGETIPNPQYNIWLNNDGLLTSWLLGIITEDVLATIEG
        MA  E +L+IQ+FHQCSSL+SIKL++SN LLW+SQVLPLVRSLG+  HL E++   +     + +   +     W +NDGLLTSWLLG++TE+V+  ++G
Subjt:  MAKQETILTIQSFHQCSSLISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLTDKDGETIPNPQYNIWLNNDGLLTSWLLGIITEDVLATIEG

Query:  TDSAYQMWKSLEEQLLAVTKENEIHLNEAILSLKKGSLSLDEYLKKTKLFCDQLAAMKKPVDDLTKVFHVARGLGAKYHGFKTAMLSKAPYPTYNEFILA
        T++AY +W SL E+LL +TKE E+ L   +  +KKG+ SLDEYL++ K  CD LAA++KPV DL KVF +A+GLG KY  F+ AMLSK PYP+YN+F+LA
Subjt:  TDSAYQMWKSLEEQLLAVTKENEIHLNEAILSLKKGSLSLDEYLKKTKLFCDQLAAMKKPVDDLTKVFHVARGLGAKYHGFKTAMLSKAPYPTYNEFILA

Query:  LKAHEEEAEAEEE
        L+ HE+    E E
Subjt:  LKAHEEEAEAEEE

A0A438IAM2 Retrovirus-related Pol polyprotein from transposon RE1

2.2e-57

53.52

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Query:  MAKQETILTIQSFHQCSSLISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLTDKDGETIPNPQYNIWLNNDGLLTSWLLGIITEDVLATIEG
        MA  E +L+IQ+FHQCSSL+SIKL++SN LLW+SQVLPLVRSLG+  HL E++   E     + +   +     W +NDGLLTSWLLG++T++V+  ++G
Subjt:  MAKQETILTIQSFHQCSSLISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLTDKDGETIPNPQYNIWLNNDGLLTSWLLGIITEDVLATIEG

Query:  TDSAYQMWKSLEEQLLAVTKENEIHLNEAILSLKKGSLSLDEYLKKTKLFCDQLAAMKKPVDDLTKVFHVARGLGAKYHGFKTAMLSKAPYPTYNEFILA
        T++AY +W SL E+LL +TKE E+ L   +  +KKG+ SLDEYL++ K  CD LAA++KPV DL KVF +A+GLG KY  F+ AMLSK PYP+YN+F+LA
Subjt:  TDSAYQMWKSLEEQLLAVTKENEIHLNEAILSLKKGSLSLDEYLKKTKLFCDQLAAMKKPVDDLTKVFHVARGLGAKYHGFKTAMLSKAPYPTYNEFILA

Query:  LKAHEEEAEAEEE
        L+ HE+    E E
Subjt:  LKAHEEEAEAEEE

A0A6J1DMG5 uncharacterized protein LOC111021379

7.5e-74

66.67

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Query:  MAKQETILTIQSFHQCSSLISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLTDKDGETIPNPQYNIWLNNDGLLTSWLLGIITEDVLATIEG
        MA  E +LT+QSFHQCSSLIS+KL+ SNYLLWKSQVLPL+R+LG+E HL E     +    K+GE+    Q   W+NNDGLLTSWLLGII EDVL  +EG
Subjt:  MAKQETILTIQSFHQCSSLISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLTDKDGETIPNPQYNIWLNNDGLLTSWLLGIITEDVLATIEG

Query:  TDSAYQMWKSLEEQLLAVTKENEIHLNEAILSLKKGSLSLDEYLKKTKLFCDQLAAMKKPVDDLTKVFHVARGLGAKYHGFKTAMLSKAPYPTYNEFILA
        T++A ++W SLEE LL +TKENEIHLNEA+L+LKKGSLS+DEY++K K  CD+L AMKKP+DDLTKVFH+ARGLG KY  F+TAMLSKAPYP+YN+F+LA
Subjt:  TDSAYQMWKSLEEQLLAVTKENEIHLNEAILSLKKGSLSLDEYLKKTKLFCDQLAAMKKPVDDLTKVFHVARGLGAKYHGFKTAMLSKAPYPTYNEFILA

Query:  LKAHEEEAEAEEE
        LKAH++    EEE
Subjt:  LKAHEEEAEAEEE

A5BC00 Uncharacterized protein

1.1e-56

53.05

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Query:  MAKQETILTIQSFHQCSSLISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLTDKDGETIPNPQYNIWLNNDGLLTSWLLGIITEDVLATIEG
        MA  E +L+IQ+FHQCSSL+SIKL++SN LLW+SQVLPLVRSLG+  HL E++         + +   +     W +NDGLLTSWLLG++TE+V+  ++G
Subjt:  MAKQETILTIQSFHQCSSLISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLTDKDGETIPNPQYNIWLNNDGLLTSWLLGIITEDVLATIEG

Query:  TDSAYQMWKSLEEQLLAVTKENEIHLNEAILSLKKGSLSLDEYLKKTKLFCDQLAAMKKPVDDLTKVFHVARGLGAKYHGFKTAMLSKAPYPTYNEFILA
        T++AY +W SL E+LL +TKE E+ L   +  +KKG+ SLDEYL++ K  CD LAA++KPV DL K F +A+GLG KY  F+ AMLSK PYP+YN+F+LA
Subjt:  TDSAYQMWKSLEEQLLAVTKENEIHLNEAILSLKKGSLSLDEYLKKTKLFCDQLAAMKKPVDDLTKVFHVARGLGAKYHGFKTAMLSKAPYPTYNEFILA

Query:  LKAHEEEAEAEEE
        L+ HE+    E E
Subjt:  LKAHEEEAEAEEE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G48050.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)

1.2e-12

26.13

Show/hide

Query:  ISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLTDKDGETIPNPQ-YNIWLNNDGLLTSWLLGIITEDVLATIEGTD-SAYQMWKSLEEQLLA
        +++ L+  NY +W+     L  S G+  H+             DG + P P     W   DGL+  W+ G IT+ +L TI     +A  +W SLE     
Subjt:  ISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLTDKDGETIPNPQ-YNIWLNNDGLLTSWLLGIITEDVLATIEGTD-SAYQMWKSLEEQLLA

Query:  VTKENEIHLNEAILSLKKGSLSLDEYLKKTKLFCDQLAAMKKPVDDLTKVFHVARGLGAKYHGFKTAMLSKAPYPTYNEFILALKAHEEEAEAEEEISL
          +   +     + +     LS+ EY +K K   D L  +  P+ D   V H+  GL  KY      +  K+P+P++ E    L   E     + + SL
Subjt:  VTKENEIHLNEAILSLKKGSLSLDEYLKKTKLFCDQLAAMKKPVDDLTKVFHVARGLGAKYHGFKTAMLSKAPYPTYNEFILALKAHEEEAEAEEEISL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCTAAACAAGAGACAATTCTTACAATCCAGTCTTTTCACCAATGCTCAAGTCTCATATCAATCAAATTGAGTGTGTCAAACTACCTACTTTGGAAGTCGCAAGTTCT
ACCACTAGTGAGGAGTCTGGGAATTGAAGACCACCTCAAGGAAAGCAAGAAACCAGAAGAGCTCTTGACTGACAAAGATGGAGAAACTATTCCAAATCCTCAATACAACA
TTTGGCTCAACAATGATGGCCTTCTAACCTCTTGGCTTCTAGGCATCATAACTGAGGATGTGTTGGCCACAATTGAAGGAACAGATTCAGCATATCAAATGTGGAAATCT
CTAGAAGAACAACTCCTCGCCGTTACAAAAGAAAACGAAATTCACCTCAATGAAGCCATCCTGAGTCTAAAAAAGGGAAGTCTCTCTTTAGATGAGTATTTGAAGAAAAC
TAAATTGTTTTGTGATCAACTTGCAGCTATGAAGAAACCAGTGGATGATCTCACAAAGGTGTTTCATGTTGCTAGAGGACTAGGAGCTAAATACCATGGATTTAAAACAG
CCATGTTGTCCAAAGCACCATATCCAACCTATAATGAGTTCATCCTAGCTCTTAAAGCACATGAGGAAGAGGCAGAGGCAGAGGAAGAAATTTCTCTTTTAGAGGAAGAG
GTTTCCCTCAAGGCAGACAAATCGCTCCTGAAAATGCAGGTTACACAAGTCCTCATAAAACGAGCTCTTTCCAAGGGAGACACAAAGATTCAGGGGCGGATTCTTGCTGA
AGGAGCAAAGAAAGGAGGGTTGTATGCACTTGATGAGCAGAAACAAAGACAAGAAGCCATGGTTGCAATATCTTCTCAAAATAAGGTGAACAAAATGATAGTAGTACAAG
AACATCACATCCAGAAGGCTTATGCCAAATTCCATCGGGTCATCACATGGTTACAAGAAGGAAATTAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MAKQETILTIQSFHQCSSLISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLTDKDGETIPNPQYNIWLNNDGLLTSWLLGIITEDVLATIEGTDSAYQMWKS
LEEQLLAVTKENEIHLNEAILSLKKGSLSLDEYLKKTKLFCDQLAAMKKPVDDLTKVFHVARGLGAKYHGFKTAMLSKAPYPTYNEFILALKAHEEEAEAEEEISLLEEE
VSLKADKSLLKMQVTQVLIKRALSKGDTKIQGRILAEGAKKGGLYALDEQKQRQEAMVAISSQNKVNKMIVVQEHHIQKAYAKFHRVITWLQEGN

Moc09g00970 (gene) of Bitter gourd (OHB3-1) v2 genome