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Moc09g01680 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g01680
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNase H domain-containing protein
Genome locationchr9:1420062..1421061
RNA-Seq ExpressionMoc09g01680
SyntenyMoc09g01680
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA7018818.1 unnamed protein product [Microthlaspi erraticum]5.4e-0536.63Show/hide
Query:  TYPKLAAFWRKEKNFHLQPP--NYYGSSTDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLNLVLAQLWGV----SSAWSLLGIRVTGINWEVDSRV
        T  +  A  R E+    QPP   ++   TD  A GNPGLAS   ++ D +G W+  F   +G  +  LA LWGV      AW    IRV  +  E+DS++
Subjt:  TYPKLAAFWRKEKNFHLQPP--NYYGSSTDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLNLVLAQLWGV----SSAWSLLGIRVTGINWEVDSRV

Query:  V
        V
Subjt:  V

CAA7018819.1 unnamed protein product [Microthlaspi erraticum]1.6e-0436.63Show/hide
Query:  TYPKLAAFWRKEKNFHLQPP--NYYGSSTDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLNLVLAQLWGV----SSAWSLLGIRVTGINWEVDSRV
        T  +  A  R E+    QPP   ++   TD  A GNPGLAS   ++ D +G W+  F   +G  +  LA LWGV      AW    IRV  +  E+DS +
Subjt:  TYPKLAAFWRKEKNFHLQPP--NYYGSSTDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLNLVLAQLWGV----SSAWSLLGIRVTGINWEVDSRV

Query:  V
        V
Subjt:  V

KAG7535824.1 Reverse transcriptase domain [Arabidopsis thaliana x Arabidopsis arenosa]2.7e-0437.35Show/hide
Query:  YYGSSTDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLNLVLAQLW----GVSSAWSLLGIRVTGINWEVDSRVVCDTLT
        ++  +TD  + GNPGLA+   ++ D  GNW + F   +G  +  LA+LW    G+  AW     RVT +  EVDS +V   LT
Subjt:  YYGSSTDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLNLVLAQLW----GVSSAWSLLGIRVTGINWEVDSRVVCDTLT

KFK31801.1 hypothetical protein AALP_AA6G160600 [Arabis alpina]2.1e-0434.45Show/hide
Query:  HNLLQEKQSRDAHGTYPKLAAFWRKEKNFHLQPP--NYYGSSTDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLNLVLAQLWGV----SSAWSLLG
        HN L ++QSR+            R E     QPP   +   +TD  + GNPGLA+   ++ D +GNW   F+  +G     LA+LWGV      AW    
Subjt:  HNLLQEKQSRDAHGTYPKLAAFWRKEKNFHLQPP--NYYGSSTDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLNLVLAQLWGV----SSAWSLLG

Query:  IRVTGINWEVDSRVVCDTL
         R+T +  EVDS +V + L
Subjt:  IRVTGINWEVDSRVVCDTL

XP_015936169.1 uncharacterized protein LOC107462117 [Arachis duranensis]1.6e-0438.82Show/hide
Query:  PPNYYGSSTDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLNLVLAQLWGV----SSAWSLLGIRVTGINWEVDSRVVCDTL
        P ++   +TD  A GNPG+A    LI +  G WI  F+  +G+     A+LWGV     +AW  LG+R   I  EVDS+ V D +
Subjt:  PPNYYGSSTDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLNLVLAQLWGV----SSAWSLLGIRVTGINWEVDSRVVCDTL

TrEMBL top hitse value%identityAlignment
A0A2N9EFE1 Uncharacterized protein3.1e-0636.78Show/hide
Query:  PPNYYGSSTDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLNLVLAQLWGVSSAWSLL-GIRVTGINWEVDSRVVCDTLTKHSH
        P  +   +TD  A GNPGLASV  LI D NGNW+  F   +G  N   A+LWG+     L   + +  +  EVD++ V D +   ++
Subjt:  PPNYYGSSTDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLNLVLAQLWGVSSAWSLL-GIRVTGINWEVDSRVVCDTLTKHSH

A0A2N9ERE1 Peptidylprolyl isomerase4.8e-0739.02Show/hide
Query:  PPNYYGSSTDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLNLVLAQLWGVSSAWSLL-GIRVTGINWEVDSRVVCDTL
        PP +   +TD    GNPG AS   ++ D NGNWI  F HKLG  N ++A+LWG+     L   + +  +  E+D++ V D L
Subjt:  PPNYYGSSTDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLNLVLAQLWGVSSAWSLL-GIRVTGINWEVDSRVVCDTL

A0A2N9EVJ4 RNase H domain-containing protein4.0e-0632.94Show/hide
Query:  NFHLQPPNYYGSSTDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLNLVLAQLWGVSSAWSLL-GIRVTGINWEVDSRVVCD
        N+   PPN++  +TD    GNPG A    +I D  GNW+  F  K+G+ N + A+LWG+     L   + +  +  E+D++ + D
Subjt:  NFHLQPPNYYGSSTDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLNLVLAQLWGVSSAWSLL-GIRVTGINWEVDSRVVCD

A0A2N9FCY8 RNase H domain-containing protein2.4e-0637.8Show/hide
Query:  PPNYYGSSTDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLNLVLAQLWGVSSAWSLL-GIRVTGINWEVDSRVVCDTL
        P ++   +TD    GNPGLAS   ++ D NGNW+  F HKLG  N ++A+LWGV     L   + +  +  E D++ + D L
Subjt:  PPNYYGSSTDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLNLVLAQLWGVSSAWSLL-GIRVTGINWEVDSRVVCDTL

A0A2N9IHI9 Uncharacterized protein5.3e-0632.94Show/hide
Query:  NFHLQPPNYYGSSTDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLNLVLAQLWGVSSAWSLL-GIRVTGINWEVDSRVVCD
        N+   PPN++  +TD    GNPG A    +I D  GNW+  F  K+G+ N + A+LWG+     L   + +  +  E+D++ + D
Subjt:  NFHLQPPNYYGSSTDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLNLVLAQLWGVSSAWSLL-GIRVTGINWEVDSRVVCD

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657502.1e-0436.49Show/hide
Query:  STDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLNLVLAQLWGV----SSAWSLLGIRVTGINWEVDSRVV
        +TD  + GNPGLAS   ++ D  G W   F   +G  +   A+LWGV      AW     +V  +  EVDS V+
Subjt:  STDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLNLVLAQLWGV----SSAWSLLGIRVTGINWEVDSRVV

Arabidopsis top hitse value%identityAlignment
AT5G42905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.8e-0535.14Show/hide
Query:  STDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLNLVLAQLWGV----SSAWSLLGIRVTGINWEVDSRVV
        +TD  + GNPGLAS   ++ D  G W   F   +G  +   A+LWGV      AW     +V  +  EVDS  +
Subjt:  STDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLNLVLAQLWGV----SSAWSLLGIRVTGINWEVDSRVV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGCTCTCTTCTCTCTCTCCAAGGGTCCCCGTTGGTTCTTTCAACTTCTTGCAATCGAAACTATCAGTTGCTGCATTGAGAATAAGCACTACTGCATTTGGTTTGA
CAATGGAAGTTTTTTCGTTGAAGATATGGCCACTAGCTTTTTGCTGCCCCTTCATCTTTCTCATTTAGCATGGTTTGAGAGCCAATTTGTTGATCTGATGCATAACCTCC
TTCAAGAGAAGCAAAGCAGAGATGCTCATGGAACATATCCGAAGTTGGCAGCCTTCTGGAGGAAGGAAAAGAATTTTCATCTGCAGCCGCCGAACTACTATGGAAGCTCA
ACTGACGACTTGGCATGTGGAAATCCTGGATTGGCAAGTGTTGACAGTCTCATTTGGGACTTGAACGGAAATTGGATAACTGATTTCATGCATAAACTTGGTCATTTGAA
TTTGGTTCTAGCACAATTGTGGGGTGTTTCTTCGGCATGGAGCTTGCTTGGAATTCGGGTTACAGGAATTAATTGGGAGGTAGACTCTCGGGTGGTTTGTGATACCTTGA
CTAAGCATTCGCATTATGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGCTCTCTTCTCTCTCTCCAAGGGTCCCCGTTGGTTCTTTCAACTTCTTGCAATCGAAACTATCAGTTGCTGCATTGAGAATAAGCACTACTGCATTTGGTTTGA
CAATGGAAGTTTTTTCGTTGAAGATATGGCCACTAGCTTTTTGCTGCCCCTTCATCTTTCTCATTTAGCATGGTTTGAGAGCCAATTTGTTGATCTGATGCATAACCTCC
TTCAAGAGAAGCAAAGCAGAGATGCTCATGGAACATATCCGAAGTTGGCAGCCTTCTGGAGGAAGGAAAAGAATTTTCATCTGCAGCCGCCGAACTACTATGGAAGCTCA
ACTGACGACTTGGCATGTGGAAATCCTGGATTGGCAAGTGTTGACAGTCTCATTTGGGACTTGAACGGAAATTGGATAACTGATTTCATGCATAAACTTGGTCATTTGAA
TTTGGTTCTAGCACAATTGTGGGGTGTTTCTTCGGCATGGAGCTTGCTTGGAATTCGGGTTACAGGAATTAATTGGGAGGTAGACTCTCGGGTGGTTTGTGATACCTTGA
CTAAGCATTCGCATTATGCTTGA
Protein sequenceShow/hide protein sequence
MGALFSLSKGPRWFFQLLAIETISCCIENKHYCIWFDNGSFFVEDMATSFLLPLHLSHLAWFESQFVDLMHNLLQEKQSRDAHGTYPKLAAFWRKEKNFHLQPPNYYGSS
TDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLNLVLAQLWGVSSAWSLLGIRVTGINWEVDSRVVCDTLTKHSHYA