| GenBank top hits | e value | %identity | Alignment |
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| XP_002271476.1 PREDICTED: sm-like protein LSM1B [Vitis vinifera] | 7.0e-57 | 90.62 | Show/hide |
Query: MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
MSWA EDIYLSTSLA+YLDKK+LVLLRD RKLLGILRSFDQFANAVLEG+CERVIVGDLY DIPLGLYVIRGENVVL+GELDLEKEELPPHMT VSA E
Subjt: MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
Query: IKRAQKAEREASDLKGTIRKRLEFLDLD
IKRAQKAEREASDLKGT+RKR+EFLDLD
Subjt: IKRAQKAEREASDLKGTIRKRLEFLDLD
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| XP_004141715.1 sm-like protein LSM1B [Cucumis sativus] | 2.5e-62 | 99.22 | Show/hide |
Query: MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
Subjt: MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
Query: IKRAQKAEREASDLKGTIRKRLEFLDLD
IKRAQKAEREA+DLKGTIRKRLEFLDLD
Subjt: IKRAQKAEREASDLKGTIRKRLEFLDLD
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| XP_022154301.1 sm-like protein LSM1B [Momordica charantia] | 1.1e-62 | 100 | Show/hide |
Query: MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
Subjt: MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
Query: IKRAQKAEREASDLKGTIRKRLEFLDLD
IKRAQKAEREASDLKGTIRKRLEFLDLD
Subjt: IKRAQKAEREASDLKGTIRKRLEFLDLD
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| XP_022964148.1 sm-like protein LSM1B [Cucurbita moschata] | 1.6e-61 | 97.66 | Show/hide |
Query: MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGEL++EKEELPPHMTHVSAVE
Subjt: MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
Query: IKRAQKAEREASDLKGTIRKRLEFLDLD
IKRAQKAEREA+DLKGTIRKRLEFLDLD
Subjt: IKRAQKAEREASDLKGTIRKRLEFLDLD
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| XP_023515193.1 sm-like protein LSM1B isoform X1 [Cucurbita pepo subsp. pepo] | 3.6e-61 | 96.88 | Show/hide |
Query: MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGEL++EKEELPPHMTHVSA+E
Subjt: MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
Query: IKRAQKAEREASDLKGTIRKRLEFLDLD
IKRAQKAEREA+DLKGTIRKRLEFLDLD
Subjt: IKRAQKAEREASDLKGTIRKRLEFLDLD
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A0A0KAS4 U6 snRNA-associated Sm-like protein LSm1 | 1.2e-62 | 99.22 | Show/hide |
Query: MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
Subjt: MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
Query: IKRAQKAEREASDLKGTIRKRLEFLDLD
IKRAQKAEREA+DLKGTIRKRLEFLDLD
Subjt: IKRAQKAEREASDLKGTIRKRLEFLDLD
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| A0A5A7V0M1 U6 snRNA-associated Sm-like protein LSm1 | 1.2e-62 | 99.22 | Show/hide |
Query: MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
Subjt: MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
Query: IKRAQKAEREASDLKGTIRKRLEFLDLD
IKRAQKAEREA+DLKGTIRKRLEFLDLD
Subjt: IKRAQKAEREASDLKGTIRKRLEFLDLD
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| A0A6J1DNB5 U6 snRNA-associated Sm-like protein LSm1 | 5.4e-63 | 100 | Show/hide |
Query: MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
Subjt: MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
Query: IKRAQKAEREASDLKGTIRKRLEFLDLD
IKRAQKAEREASDLKGTIRKRLEFLDLD
Subjt: IKRAQKAEREASDLKGTIRKRLEFLDLD
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| A0A6J1GSW8 U6 snRNA-associated Sm-like protein LSm1 | 1.2e-62 | 99.22 | Show/hide |
Query: MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
Subjt: MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
Query: IKRAQKAEREASDLKGTIRKRLEFLDLD
IKRAQKAEREA+DLKGTIRKRLEFLDLD
Subjt: IKRAQKAEREASDLKGTIRKRLEFLDLD
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| A0A6J1JPU7 U6 snRNA-associated Sm-like protein LSm1 | 1.2e-62 | 99.22 | Show/hide |
Query: MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
Subjt: MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
Query: IKRAQKAEREASDLKGTIRKRLEFLDLD
IKRAQKAEREA+DLKGTIRKRLEFLDLD
Subjt: IKRAQKAEREASDLKGTIRKRLEFLDLD
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P87173 U6 snRNA-associated Sm-like protein LSm1 | 2.4e-23 | 50.43 | Show/hide |
Query: STSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKE-ELPPHMTHVSAVEIKRAQKAERE
S SL +Y+D+KV+V+LRDG+KL+GILRSFDQFAN +L+ + ER+ V D+Y DI G+Y++RGENVVLLGELDL+KE + + + A E+ K E
Subjt: STSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKE-ELPPHMTHVSAVEIKRAQKAERE
Query: ASDLKGTIRKRLEFL
+ K IR++ ++L
Subjt: ASDLKGTIRKRLEFL
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| Q54W83 Probable U6 snRNA-associated Sm-like protein LSm1 | 2.0e-22 | 46.43 | Show/hide |
Query: LSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVEIKRAQKAERE
+S+ L + +DKK++V+LRDGRK +GI+R+FDQFAN VL+ + ER+ VGD YSD LGL+ IRG+NVV+LGE+D +KE + +S EI +A E+
Subjt: LSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVEIKRAQKAERE
Query: ASDLKGTIRKRL
+ + +++R+
Subjt: ASDLKGTIRKRL
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| Q5E9Z8 U6 snRNA-associated Sm-like protein LSm1 | 2.0e-22 | 57.58 | Show/hide |
Query: STSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVEIKRAQKAERE
+ SL +DKK LVLLRDGR L+G LRS DQFAN VL + ER+ VG Y DIP G++V+RGENVVLLGE+DLEKE P + VS EI Q+ E++
Subjt: STSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVEIKRAQKAERE
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| Q8LFL8 Sm-like protein LSM1B | 9.8e-54 | 80.47 | Show/hide |
Query: MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
MSWA E+IYLSTSLA+YLD+K+LVLLRDGRKL+G LRSFDQFANAVLEG+CERVIVG+ Y DIPLGLYVIRGENVVL+GELD E+EELPPHM VS E
Subjt: MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
Query: IKRAQKAEREASDLKGTIRKRLEFLDLD
IKRAQK EREAS+L+GT+RKR+EFLD D
Subjt: IKRAQKAEREASDLKGTIRKRLEFLDLD
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| Q945P8 Sm-like protein LSM1A | 1.7e-50 | 78.12 | Show/hide |
Query: MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
MSWA+ +DI+ STSLA YLDKK+LVLLRDGRKL+G+LRSFDQFANAVLE + ERVIVGDLY DIPLGLY+IRGENVVL+GELD+EKEELP HM V E
Subjt: MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
Query: IKRAQKAEREASDLKGTIRKRLEFLDLD
IKRAQKAE+E LKGT+RKR+EFLDLD
Subjt: IKRAQKAEREASDLKGTIRKRLEFLDLD
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| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT1G19120.1 Small nuclear ribonucleoprotein family protein | 1.2e-51 | 78.12 | Show/hide |
Query: MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
MSWA+ +DI+ STSLA YLDKK+LVLLRDGRKL+G+LRSFDQFANAVLE + ERVIVGDLY DIPLGLY+IRGENVVL+GELD+EKEELP HM V E
Subjt: MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
Query: IKRAQKAEREASDLKGTIRKRLEFLDLD
IKRAQKAE+E LKGT+RKR+EFLDLD
Subjt: IKRAQKAEREASDLKGTIRKRLEFLDLD
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| AT1G65700.1 Small nuclear ribonucleoprotein family protein | 2.4e-10 | 41.33 | Show/hide |
Query: STSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVI-VGDLYSDIPLGLYVIRGENVVLLGELDLE
+T L +D+ + V+ DGR ++G+L+ FDQ N +L+ S ERV + LGLY+IRG+N+ ++GELD E
Subjt: STSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVI-VGDLYSDIPLGLYVIRGENVVLLGELDLE
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| AT1G65700.2 Small nuclear ribonucleoprotein family protein | 2.4e-10 | 41.33 | Show/hide |
Query: STSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVI-VGDLYSDIPLGLYVIRGENVVLLGELDLE
+T L +D+ + V+ DGR ++G+L+ FDQ N +L+ S ERV + LGLY+IRG+N+ ++GELD E
Subjt: STSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVI-VGDLYSDIPLGLYVIRGENVVLLGELDLE
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| AT3G14080.1 Small nuclear ribonucleoprotein family protein | 7.0e-55 | 80.47 | Show/hide |
Query: MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
MSWA E+IYLSTSLA+YLD+K+LVLLRDGRKL+G LRSFDQFANAVLEG+CERVIVG+ Y DIPLGLYVIRGENVVL+GELD E+EELPPHM VS E
Subjt: MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
Query: IKRAQKAEREASDLKGTIRKRLEFLDLD
IKRAQK EREAS+L+GT+RKR+EFLD D
Subjt: IKRAQKAEREASDLKGTIRKRLEFLDLD
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| AT3G14080.2 Small nuclear ribonucleoprotein family protein | 7.0e-55 | 80.47 | Show/hide |
Query: MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
MSWA E+IYLSTSLA+YLD+K+LVLLRDGRKL+G LRSFDQFANAVLEG+CERVIVG+ Y DIPLGLYVIRGENVVL+GELD E+EELPPHM VS E
Subjt: MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVE
Query: IKRAQKAEREASDLKGTIRKRLEFLDLD
IKRAQK EREAS+L+GT+RKR+EFLD D
Subjt: IKRAQKAEREASDLKGTIRKRLEFLDLD
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