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Moc09g01960 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g01960
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase
Genome locationchr9:1637823..1642802
RNA-Seq ExpressionMoc09g01960
SyntenyMoc09g01960
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain
IPR021109 - Aspartic peptidase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]1.0e-6449.14Show/hide
Query:  AKLWWRARYVDVQEGKCTIDTWEKPKQELRSQFFPENVEILARRKLLELRHTGNIRDYVKQFLGLMLEIHDMSEKDKVFAFVEGLKPWAQAKLYEQ----
        AKLWWR+R+VD+QEG+CTIDTW+  K+ELRSQFFPENVEILARRKL EL+HTG+IR+YVKQF GLML+I DMSEKDKVF FVEGLKPWA+ KLYEQ    
Subjt:  AKLWWRARYVDVQEGKCTIDTWEKPKQELRSQFFPENVEILARRKLLELRHTGNIRDYVKQFLGLMLEIHDMSEKDKVFAFVEGLKPWAQAKLYEQ----

Query:  ----------------------------------------------------------------------------------KRPHRVYECPNRAALRAF
                                                                                          K PH   ECPN+ A  AF
Subjt:  ----------------------------------------------------------------------------------KRPHRVYECPNRAALRAF

Query:  QATLTNDRAIEPEGPETDTPPEDADDNPPMRALKFLSALQKKAEEVKEPLERGLMYVEVWVNQKAAKSTMVDSGATHNFMTETEARRLNLR
        QA+LT+D   +    E +    +  DNP M ALKFLS+LQKK  E   P+ERGLMYV+ W+NQK  KSTMVDSGATHNF+TE EA+RLNLR
Subjt:  QATLTNDRAIEPEGPETDTPPEDADDNPPMRALKFLSALQKKAEEVKEPLERGLMYVEVWVNQKAAKSTMVDSGATHNFMTETEARRLNLR

KAA0047432.1 uncharacterized protein E6C27_scaffold498G00230 [Cucumis melo var. makuwa]5.9e-6549.14Show/hide
Query:  AKLWWRARYVDVQEGKCTIDTWEKPKQELRSQFFPENVEILARRKLLELRHTGNIRDYVKQFLGLMLEIHDMSEKDKVFAFVEGLKPWAQAKLYEQ----
        AKLWWR+R+VD+QEG+CTIDTW+  K+ELRSQFFPENVEILARRKL EL+HTG+IR+YVKQF GLML+I DMSEKDKVF FVEGLKPWA+ KLYEQ    
Subjt:  AKLWWRARYVDVQEGKCTIDTWEKPKQELRSQFFPENVEILARRKLLELRHTGNIRDYVKQFLGLMLEIHDMSEKDKVFAFVEGLKPWAQAKLYEQ----

Query:  ----------------------------------------------------------------------------------KRPHRVYECPNRAALRAF
                                                                                          K PH   ECPN+ A  AF
Subjt:  ----------------------------------------------------------------------------------KRPHRVYECPNRAALRAF

Query:  QATLTNDRAIEPEGPETDTPPEDADDNPPMRALKFLSALQKKAEEVKEPLERGLMYVEVWVNQKAAKSTMVDSGATHNFMTETEARRLNLR
        QA+LT+D   +    E +    +  DNP M ALKFLS+LQKK  E   P+ERGLMYV+ W+NQK  KSTMVDSGATHNF+TE EA+RLNLR
Subjt:  QATLTNDRAIEPEGPETDTPPEDADDNPPMRALKFLSALQKKAEEVKEPLERGLMYVEVWVNQKAAKSTMVDSGATHNFMTETEARRLNLR

KAA0063412.1 reverse transcriptase [Cucumis melo var. makuwa]1.0e-6449.14Show/hide
Query:  AKLWWRARYVDVQEGKCTIDTWEKPKQELRSQFFPENVEILARRKLLELRHTGNIRDYVKQFLGLMLEIHDMSEKDKVFAFVEGLKPWAQAKLYEQ----
        AKLWWR+R+VD+QEG+CTIDTW+  K+ELRSQFFPENVEILARRKL EL+HTG+IR+YVKQF GLML+I DMSEKDKVF FVEGLKPWA+ KLYEQ    
Subjt:  AKLWWRARYVDVQEGKCTIDTWEKPKQELRSQFFPENVEILARRKLLELRHTGNIRDYVKQFLGLMLEIHDMSEKDKVFAFVEGLKPWAQAKLYEQ----

Query:  ----------------------------------------------------------------------------------KRPHRVYECPNRAALRAF
                                                                                          K PH   ECPN+ A  AF
Subjt:  ----------------------------------------------------------------------------------KRPHRVYECPNRAALRAF

Query:  QATLTNDRAIEPEGPETDTPPEDADDNPPMRALKFLSALQKKAEEVKEPLERGLMYVEVWVNQKAAKSTMVDSGATHNFMTETEARRLNLR
        QA+LT+D   +    E +    +  DNP M ALKFLS+LQKK  E   P+ERGLMYV+ W+NQK  KSTMVDSGATHNF+TE EA+RLNLR
Subjt:  QATLTNDRAIEPEGPETDTPPEDADDNPPMRALKFLSALQKKAEEVKEPLERGLMYVEVWVNQKAAKSTMVDSGATHNFMTETEARRLNLR

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]1.0e-6449.14Show/hide
Query:  AKLWWRARYVDVQEGKCTIDTWEKPKQELRSQFFPENVEILARRKLLELRHTGNIRDYVKQFLGLMLEIHDMSEKDKVFAFVEGLKPWAQAKLYEQ----
        AKLWWR+R+VD+QEG+CTIDTW+  K+ELRSQFFPENVEILARRKL EL+HTG+IR+YVKQF GLML+I DMSEKDKVF FVEGLKPWA+ KLYEQ    
Subjt:  AKLWWRARYVDVQEGKCTIDTWEKPKQELRSQFFPENVEILARRKLLELRHTGNIRDYVKQFLGLMLEIHDMSEKDKVFAFVEGLKPWAQAKLYEQ----

Query:  ----------------------------------------------------------------------------------KRPHRVYECPNRAALRAF
                                                                                          K PH   ECPN+ A  AF
Subjt:  ----------------------------------------------------------------------------------KRPHRVYECPNRAALRAF

Query:  QATLTNDRAIEPEGPETDTPPEDADDNPPMRALKFLSALQKKAEEVKEPLERGLMYVEVWVNQKAAKSTMVDSGATHNFMTETEARRLNLR
        QA+LT+D   +    E +    +  DNP M ALKFLS+LQKK  E   P+ERGLMYV+ W+NQK  KSTMVDSGATHNF+TE EA+RLNLR
Subjt:  QATLTNDRAIEPEGPETDTPPEDADDNPPMRALKFLSALQKKAEEVKEPLERGLMYVEVWVNQKAAKSTMVDSGATHNFMTETEARRLNLR

XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]4.2e-7960.27Show/hide
Query:  AKLWWRARYVDVQEGKCTIDTWEKPKQELRSQFFPENVEILARRKLLELRHTGNIRDYVKQFLGLMLEIHDMSEKDKVFAFVEGLKPWAQAKLYEQ----
        AKLWWRARYVDVQEGKCTIDTWEK KQELRSQ    ++  +          TGNIRDYVKQF GLML+I DMSEKDKVFAFVEGLKPWA+AKLYEQ    
Subjt:  AKLWWRARYVDVQEGKCTIDTWEKPKQELRSQFFPENVEILARRKLLELRHTGNIRDYVKQFLGLMLEIHDMSEKDKVFAFVEGLKPWAQAKLYEQ----

Query:  ------------------------------------------------------------------------------------KRPHRVYECPNRAALR
                                                                                            K PHRVYECPNRAALR
Subjt:  ------------------------------------------------------------------------------------KRPHRVYECPNRAALR

Query:  AFQATLTNDRAIEPEGPETDTPPEDADDNPPMRALKFLSALQKKAEEVKEPLERGLMYVEVWVNQKAAKSTMVDSGATHNFMTETEARRLNL
        AFQATLTNDRAIEPEGPETDTPPEDADDNP M ALKFLSALQKKAEEVKEPLERGLMYVE WVNQKAAKSTMVDSGATHNFMTETEARRLNL
Subjt:  AFQATLTNDRAIEPEGPETDTPPEDADDNPPMRALKFLSALQKKAEEVKEPLERGLMYVEVWVNQKAAKSTMVDSGATHNFMTETEARRLNL

TrEMBL top hitse value%identityAlignment
A0A5A7T0E2 Reverse transcriptase4.9e-6549.14Show/hide
Query:  AKLWWRARYVDVQEGKCTIDTWEKPKQELRSQFFPENVEILARRKLLELRHTGNIRDYVKQFLGLMLEIHDMSEKDKVFAFVEGLKPWAQAKLYEQ----
        AKLWWR+R+VD+QEG+CTIDTW+  K+ELRSQFFPENVEILARRKL EL+HTG+IR+YVKQF GLML+I DMSEKDKVF FVEGLKPWA+ KLYEQ    
Subjt:  AKLWWRARYVDVQEGKCTIDTWEKPKQELRSQFFPENVEILARRKLLELRHTGNIRDYVKQFLGLMLEIHDMSEKDKVFAFVEGLKPWAQAKLYEQ----

Query:  ----------------------------------------------------------------------------------KRPHRVYECPNRAALRAF
                                                                                          K PH   ECPN+ A  AF
Subjt:  ----------------------------------------------------------------------------------KRPHRVYECPNRAALRAF

Query:  QATLTNDRAIEPEGPETDTPPEDADDNPPMRALKFLSALQKKAEEVKEPLERGLMYVEVWVNQKAAKSTMVDSGATHNFMTETEARRLNLR
        QA+LT+D   +    E +    +  DNP M ALKFLS+LQKK  E   P+ERGLMYV+ W+NQK  KSTMVDSGATHNF+TE EA+RLNLR
Subjt:  QATLTNDRAIEPEGPETDTPPEDADDNPPMRALKFLSALQKKAEEVKEPLERGLMYVEVWVNQKAAKSTMVDSGATHNFMTETEARRLNLR

A0A5A7TVD8 Reverse transcriptase domain-containing protein2.9e-6549.14Show/hide
Query:  AKLWWRARYVDVQEGKCTIDTWEKPKQELRSQFFPENVEILARRKLLELRHTGNIRDYVKQFLGLMLEIHDMSEKDKVFAFVEGLKPWAQAKLYEQ----
        AKLWWR+R+VD+QEG+CTIDTW+  K+ELRSQFFPENVEILARRKL EL+HTG+IR+YVKQF GLML+I DMSEKDKVF FVEGLKPWA+ KLYEQ    
Subjt:  AKLWWRARYVDVQEGKCTIDTWEKPKQELRSQFFPENVEILARRKLLELRHTGNIRDYVKQFLGLMLEIHDMSEKDKVFAFVEGLKPWAQAKLYEQ----

Query:  ----------------------------------------------------------------------------------KRPHRVYECPNRAALRAF
                                                                                          K PH   ECPN+ A  AF
Subjt:  ----------------------------------------------------------------------------------KRPHRVYECPNRAALRAF

Query:  QATLTNDRAIEPEGPETDTPPEDADDNPPMRALKFLSALQKKAEEVKEPLERGLMYVEVWVNQKAAKSTMVDSGATHNFMTETEARRLNLR
        QA+LT+D   +    E +    +  DNP M ALKFLS+LQKK  E   P+ERGLMYV+ W+NQK  KSTMVDSGATHNF+TE EA+RLNLR
Subjt:  QATLTNDRAIEPEGPETDTPPEDADDNPPMRALKFLSALQKKAEEVKEPLERGLMYVEVWVNQKAAKSTMVDSGATHNFMTETEARRLNLR

A0A5D3BRZ6 Reverse transcriptase4.9e-6549.14Show/hide
Query:  AKLWWRARYVDVQEGKCTIDTWEKPKQELRSQFFPENVEILARRKLLELRHTGNIRDYVKQFLGLMLEIHDMSEKDKVFAFVEGLKPWAQAKLYEQ----
        AKLWWR+R+VD+QEG+CTIDTW+  K+ELRSQFFPENVEILARRKL EL+HTG+IR+YVKQF GLML+I DMSEKDKVF FVEGLKPWA+ KLYEQ    
Subjt:  AKLWWRARYVDVQEGKCTIDTWEKPKQELRSQFFPENVEILARRKLLELRHTGNIRDYVKQFLGLMLEIHDMSEKDKVFAFVEGLKPWAQAKLYEQ----

Query:  ----------------------------------------------------------------------------------KRPHRVYECPNRAALRAF
                                                                                          K PH   ECPN+ A  AF
Subjt:  ----------------------------------------------------------------------------------KRPHRVYECPNRAALRAF

Query:  QATLTNDRAIEPEGPETDTPPEDADDNPPMRALKFLSALQKKAEEVKEPLERGLMYVEVWVNQKAAKSTMVDSGATHNFMTETEARRLNLR
        QA+LT+D   +    E +    +  DNP M ALKFLS+LQKK  E   P+ERGLMYV+ W+NQK  KSTMVDSGATHNF+TE EA+RLNLR
Subjt:  QATLTNDRAIEPEGPETDTPPEDADDNPPMRALKFLSALQKKAEEVKEPLERGLMYVEVWVNQKAAKSTMVDSGATHNFMTETEARRLNLR

A0A5D3C4R1 Reverse transcriptase4.9e-6549.14Show/hide
Query:  AKLWWRARYVDVQEGKCTIDTWEKPKQELRSQFFPENVEILARRKLLELRHTGNIRDYVKQFLGLMLEIHDMSEKDKVFAFVEGLKPWAQAKLYEQ----
        AKLWWR+R+VD+QEG+CTIDTW+  K+ELRSQFFPENVEILARRKL EL+HTG+IR+YVKQF GLML+I DMSEKDKVF FVEGLKPWA+ KLYEQ    
Subjt:  AKLWWRARYVDVQEGKCTIDTWEKPKQELRSQFFPENVEILARRKLLELRHTGNIRDYVKQFLGLMLEIHDMSEKDKVFAFVEGLKPWAQAKLYEQ----

Query:  ----------------------------------------------------------------------------------KRPHRVYECPNRAALRAF
                                                                                          K PH   ECPN+ A  AF
Subjt:  ----------------------------------------------------------------------------------KRPHRVYECPNRAALRAF

Query:  QATLTNDRAIEPEGPETDTPPEDADDNPPMRALKFLSALQKKAEEVKEPLERGLMYVEVWVNQKAAKSTMVDSGATHNFMTETEARRLNLR
        QA+LT+D   +    E +    +  DNP M ALKFLS+LQKK  E   P+ERGLMYV+ W+NQK  KSTMVDSGATHNF+TE EA+RLNLR
Subjt:  QATLTNDRAIEPEGPETDTPPEDADDNPPMRALKFLSALQKKAEEVKEPLERGLMYVEVWVNQKAAKSTMVDSGATHNFMTETEARRLNLR

A0A6J1DLQ6 uncharacterized protein LOC1110223202.0e-7960.27Show/hide
Query:  AKLWWRARYVDVQEGKCTIDTWEKPKQELRSQFFPENVEILARRKLLELRHTGNIRDYVKQFLGLMLEIHDMSEKDKVFAFVEGLKPWAQAKLYEQ----
        AKLWWRARYVDVQEGKCTIDTWEK KQELRSQ    ++  +          TGNIRDYVKQF GLML+I DMSEKDKVFAFVEGLKPWA+AKLYEQ    
Subjt:  AKLWWRARYVDVQEGKCTIDTWEKPKQELRSQFFPENVEILARRKLLELRHTGNIRDYVKQFLGLMLEIHDMSEKDKVFAFVEGLKPWAQAKLYEQ----

Query:  ------------------------------------------------------------------------------------KRPHRVYECPNRAALR
                                                                                            K PHRVYECPNRAALR
Subjt:  ------------------------------------------------------------------------------------KRPHRVYECPNRAALR

Query:  AFQATLTNDRAIEPEGPETDTPPEDADDNPPMRALKFLSALQKKAEEVKEPLERGLMYVEVWVNQKAAKSTMVDSGATHNFMTETEARRLNL
        AFQATLTNDRAIEPEGPETDTPPEDADDNP M ALKFLSALQKKAEEVKEPLERGLMYVE WVNQKAAKSTMVDSGATHNFMTETEARRLNL
Subjt:  AFQATLTNDRAIEPEGPETDTPPEDADDNPPMRALKFLSALQKKAEEVKEPLERGLMYVEVWVNQKAAKSTMVDSGATHNFMTETEARRLNL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACAGATTTATAGAAGTTGAGCTGAAATTGAGAGATGAAGGAGAAAACGCCCCGCAATCGAAGTGGAATTACGACAAAAAAATCGAAGAAGAAGTGTCAAAGAAGAA
CAGGGAATTGATTCAGTTGTGGGAAGGCTGCGGGCAAGCACGTGGCAACCAGGCCACGTGGTCAGCCGACGAGTCGGAAGATACGACTATCGGCACGCTGCGAGCACGTG
ACGGGTCCGGTGGCGCCGACGGCCGCTTCTGGGGCGGAGGTTGCGGCGGCGATTTCGAAGTGAAGGGTCAAAGTGGTGGTTGGTGGACCACTCCACAGTCTGCATCTTGC
TGTGCGAAGTTGTGGTGGAGAGCGAGATATGTAGATGTACAAGAGGGCAAATGTACCATCGACACGTGGGAAAAACCAAAGCAGGAACTTAGATCCCAATTTTTCCCGGA
GAATGTAGAGATCCTTGCCCGTCGTAAATTGCTTGAATTACGACACACAGGAAATATTCGAGACTATGTAAAGCAGTTTTTAGGGTTGATGTTGGAAATCCACGATATGT
CCGAGAAAGACAAGGTCTTCGCCTTCGTGGAGGGCTTGAAACCATGGGCCCAGGCCAAACTGTATGAACAGAAGAGACCGCACAGAGTATACGAGTGCCCGAATCGAGCT
GCTCTCCGGGCCTTCCAAGCCACACTGACGAACGACCGAGCGATCGAACCGGAAGGCCCCGAAACAGATACTCCTCCCGAAGACGCCGATGACAACCCCCCTATGAGAGC
ACTCAAATTTTTATCGGCGCTTCAGAAGAAAGCCGAGGAAGTGAAAGAACCTCTGGAACGTGGTCTGATGTATGTGGAAGTATGGGTCAATCAAAAAGCCGCAAAAAGCA
CTATGGTAGATTCTGGTGCCACCCACAATTTCATGACAGAAACCGAAGCACGTCGGCTGAACTTGCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGTACAGATTTATAGAAGTTGAGCTGAAATTGAGAGATGAAGGAGAAAACGCCCCGCAATCGAAGTGGAATTACGACAAAAAAATCGAAGAAGAAGTGTCAAAGAAGAA
CAGGGAATTGATTCAGTTGTGGGAAGGCTGCGGGCAAGCACGTGGCAACCAGGCCACGTGGTCAGCCGACGAGTCGGAAGATACGACTATCGGCACGCTGCGAGCACGTG
ACGGGTCCGGTGGCGCCGACGGCCGCTTCTGGGGCGGAGGTTGCGGCGGCGATTTCGAAGTGAAGGGTCAAAGTGGTGGTTGGTGGACCACTCCACAGTCTGCATCTTGC
TGTGCGAAGTTGTGGTGGAGAGCGAGATATGTAGATGTACAAGAGGGCAAATGTACCATCGACACGTGGGAAAAACCAAAGCAGGAACTTAGATCCCAATTTTTCCCGGA
GAATGTAGAGATCCTTGCCCGTCGTAAATTGCTTGAATTACGACACACAGGAAATATTCGAGACTATGTAAAGCAGTTTTTAGGGTTGATGTTGGAAATCCACGATATGT
CCGAGAAAGACAAGGTCTTCGCCTTCGTGGAGGGCTTGAAACCATGGGCCCAGGCCAAACTGTATGAACAGAAGAGACCGCACAGAGTATACGAGTGCCCGAATCGAGCT
GCTCTCCGGGCCTTCCAAGCCACACTGACGAACGACCGAGCGATCGAACCGGAAGGCCCCGAAACAGATACTCCTCCCGAAGACGCCGATGACAACCCCCCTATGAGAGC
ACTCAAATTTTTATCGGCGCTTCAGAAGAAAGCCGAGGAAGTGAAAGAACCTCTGGAACGTGGTCTGATGTATGTGGAAGTATGGGTCAATCAAAAAGCCGCAAAAAGCA
CTATGGTAGATTCTGGTGCCACCCACAATTTCATGACAGAAACCGAAGCACGTCGGCTGAACTTGCGATGA
Protein sequenceShow/hide protein sequence
MYRFIEVELKLRDEGENAPQSKWNYDKKIEEEVSKKNRELIQLWEGCGQARGNQATWSADESEDTTIGTLRARDGSGGADGRFWGGGCGGDFEVKGQSGGWWTTPQSASC
CAKLWWRARYVDVQEGKCTIDTWEKPKQELRSQFFPENVEILARRKLLELRHTGNIRDYVKQFLGLMLEIHDMSEKDKVFAFVEGLKPWAQAKLYEQKRPHRVYECPNRA
ALRAFQATLTNDRAIEPEGPETDTPPEDADDNPPMRALKFLSALQKKAEEVKEPLERGLMYVEVWVNQKAAKSTMVDSGATHNFMTETEARRLNLR