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Moc09g03680 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g03680
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNase H domain-containing protein
Genome locationchr9:2902205..2902941
RNA-Seq ExpressionMoc09g03680
SyntenyMoc09g03680
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR004345 - TB2/DP1/HVA22-related protein
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6775949.1 hypothetical protein POTOM_019451 [Populus tomentosa]1.1e-0737.25Show/hide
Query:  VKINTDGACENCKSRIGVLLQDDRFGIVVAMVDVHQGIGPYLAEIYAIREGLRLALRLGLK--WVESDSLNAINMIHQDTKWQDEAANWIADIRTLLKSF
        +K+NTDG+ ++  + IG L +D     +   V    G   +L E++AI  GL LAL L ++  WVESDSL+A+N I++   +  +A   +  IR LLK F
Subjt:  VKINTDGACENCKSRIGVLLQDDRFGIVVAMVDVHQGIGPYLAEIYAIREGLRLALRLGLK--WVESDSLNAINMIHQDTKWQDEAANWIADIRTLLKSF

Query:  SR
         +
Subjt:  SR

XP_022155289.1 uncharacterized protein LOC111022426 [Momordica charantia]8.5e-1157.69Show/hide
Query:  CVVKINTDGACENCKSRIGVLLQDDRFGIVVAMVDVHQGIGPYLAEIYAIREGLRLALRLGLK--WVESDSLNAINMI
        CVVK+NTD A     S +GVLL+D    IV AM+D H    P L EI AIREGLRLA RLG+    VESDSL A+N+I
Subjt:  CVVKINTDGACENCKSRIGVLLQDDRFGIVVAMVDVHQGIGPYLAEIYAIREGLRLALRLGLK--WVESDSLNAINMI

XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]2.2e-1449.5Show/hide
Query:  VVKINTDGACENCKSRIGVLLQDDRFGIVVAMVDVHQGIGPYLAEIYAIREGLRLALRLGLK--WVESDSLNAINMIHQDTKWQDEAANWIADIRTLLKS
        VVK+NTD A     S +GVLL++    IV AMVD H    P LA+I AIREGL LA RLG+    VE+DSL A+N+I   + W+ EA +W+ DIR   + 
Subjt:  VVKINTDGACENCKSRIGVLLQDDRFGIVVAMVDVHQGIGPYLAEIYAIREGLRLALRLGLK--WVESDSLNAINMIHQDTKWQDEAANWIADIRTLLKS

Query:  F
        F
Subjt:  F

XP_034889968.1 uncharacterized protein LOC118030048 isoform X1 [Populus alba]1.1e-0737.25Show/hide
Query:  VKINTDGACENCKSRIGVLLQDDRFGIVVAMVDVHQGIGPYLAEIYAIREGLRLALRLGLK--WVESDSLNAINMIHQDTKWQDEAANWIADIRTLLKSF
        +K+NTDG+ ++  + IG L +D     +   V    G   +L E++AI  GL LAL L ++  WVESDSL+A+N I++   +  +A   +  IR LLK F
Subjt:  VKINTDGACENCKSRIGVLLQDDRFGIVVAMVDVHQGIGPYLAEIYAIREGLRLALRLGLK--WVESDSLNAINMIHQDTKWQDEAANWIADIRTLLKSF

Query:  SR
         +
Subjt:  SR

XP_034889973.1 uncharacterized protein LOC118030048 isoform X2 [Populus alba]1.1e-0737.25Show/hide
Query:  VKINTDGACENCKSRIGVLLQDDRFGIVVAMVDVHQGIGPYLAEIYAIREGLRLALRLGLK--WVESDSLNAINMIHQDTKWQDEAANWIADIRTLLKSF
        +K+NTDG+ ++  + IG L +D     +   V    G   +L E++AI  GL LAL L ++  WVESDSL+A+N I++   +  +A   +  IR LLK F
Subjt:  VKINTDGACENCKSRIGVLLQDDRFGIVVAMVDVHQGIGPYLAEIYAIREGLRLALRLGLK--WVESDSLNAINMIHQDTKWQDEAANWIADIRTLLKSF

Query:  SR
         +
Subjt:  SR

TrEMBL top hitse value%identityAlignment
A0A2G2X055 RNase H domain-containing protein9.5e-0833.64Show/hide
Query:  VKINTDGACENCKSRIGVLLQDDRFGIVVAMVDVHQGIGPYLAEIYAIREGLRLALRLGLK--WVESDSLNAINMIHQDTKWQDEAANWIADIRTLLKSF
        +K+NTDG+ +  ++ +G LL+DD    + A V        +L E+ AI  GL LAL +G+K  WVESDS++A+  I+++     +AA+ +  I  +L  F
Subjt:  VKINTDGACENCKSRIGVLLQDDRFGIVVAMVDVHQGIGPYLAEIYAIREGLRLALRLGLK--WVESDSLNAINMIHQDTKWQDEAANWIADIRTLLKSF

Query:  SRFLSIMSTW
         ++  +  +W
Subjt:  SRFLSIMSTW

A0A2G3CP79 RNase H domain-containing protein9.5e-0833.64Show/hide
Query:  VKINTDGACENCKSRIGVLLQDDRFGIVVAMVDVHQGIGPYLAEIYAIREGLRLALRLGLK--WVESDSLNAINMIHQDTKWQDEAANWIADIRTLLKSF
        +K+NTDG+ +  ++ +G LL+DD    + A V        +L E+ AI  GL LAL +G+K  WVESDS++A+  I+++     +AA+ +  I  +L  F
Subjt:  VKINTDGACENCKSRIGVLLQDDRFGIVVAMVDVHQGIGPYLAEIYAIREGLRLALRLGLK--WVESDSLNAINMIHQDTKWQDEAANWIADIRTLLKSF

Query:  SRFLSIMSTW
         ++  +  +W
Subjt:  SRFLSIMSTW

A0A4V6ABH7 RNase H domain-containing protein5.5e-0837.25Show/hide
Query:  VKINTDGACENCKSRIGVLLQDDRFGIVVAMVDVHQGIGPYLAEIYAIREGLRLALRLGLK--WVESDSLNAINMIHQDTKWQDEAANWIADIRTLLKSF
        +K+NTDG+ ++  + IG L +D     +   V    G   +L E++AI  GL LAL L ++  WVESDSL+A+N I++   +  +A   +  IR LLK F
Subjt:  VKINTDGACENCKSRIGVLLQDDRFGIVVAMVDVHQGIGPYLAEIYAIREGLRLALRLGLK--WVESDSLNAINMIHQDTKWQDEAANWIADIRTLLKSF

Query:  SR
         +
Subjt:  SR

A0A6J1DPU1 uncharacterized protein LOC1110224264.1e-1157.69Show/hide
Query:  CVVKINTDGACENCKSRIGVLLQDDRFGIVVAMVDVHQGIGPYLAEIYAIREGLRLALRLGLK--WVESDSLNAINMI
        CVVK+NTD A     S +GVLL+D    IV AM+D H    P L EI AIREGLRLA RLG+    VESDSL A+N+I
Subjt:  CVVKINTDGACENCKSRIGVLLQDDRFGIVVAMVDVHQGIGPYLAEIYAIREGLRLALRLGLK--WVESDSLNAINMI

A0A6J1DZK3 uncharacterized protein LOC1110249681.0e-1449.5Show/hide
Query:  VVKINTDGACENCKSRIGVLLQDDRFGIVVAMVDVHQGIGPYLAEIYAIREGLRLALRLGLK--WVESDSLNAINMIHQDTKWQDEAANWIADIRTLLKS
        VVK+NTD A     S +GVLL++    IV AMVD H    P LA+I AIREGL LA RLG+    VE+DSL A+N+I   + W+ EA +W+ DIR   + 
Subjt:  VVKINTDGACENCKSRIGVLLQDDRFGIVVAMVDVHQGIGPYLAEIYAIREGLRLALRLGLK--WVESDSLNAINMIHQDTKWQDEAANWIADIRTLLKS

Query:  F
        F
Subjt:  F

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGAAGGGTATAGATGCATCACCTTTTTGTCCGATGTGTTTGAGGAAGGAGGAGACTGTGGATCATGCGCTTGTGTGGTGAAGATCAACACTGATGGTGCATGCGA
AAATTGCAAATCTCGCATAGGAGTTTTGCTACAAGACGACAGATTTGGCATCGTAGTTGCAATGGTGGATGTGCATCAAGGGATAGGCCCTTATCTGGCTGAAATTTATG
CGATTCGAGAAGGACTGAGACTCGCACTGCGATTAGGGCTGAAATGGGTTGAGTCTGATTCGTTGAATGCCATCAACATGATCCACCAAGATACAAAATGGCAGGATGAG
GCCGCCAATTGGATTGCTGATATTCGAACCCTCTTGAAGTCTTTCTCTCGGTTTCTTTCCATCATGAGTACATGGAATCGAATTCAACAGCTCATTCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAGAAGGGTATAGATGCATCACCTTTTTGTCCGATGTGTTTGAGGAAGGAGGAGACTGTGGATCATGCGCTTGTGTGGTGAAGATCAACACTGATGGTGCATGCGA
AAATTGCAAATCTCGCATAGGAGTTTTGCTACAAGACGACAGATTTGGCATCGTAGTTGCAATGGTGGATGTGCATCAAGGGATAGGCCCTTATCTGGCTGAAATTTATG
CGATTCGAGAAGGACTGAGACTCGCACTGCGATTAGGGCTGAAATGGGTTGAGTCTGATTCGTTGAATGCCATCAACATGATCCACCAAGATACAAAATGGCAGGATGAG
GCCGCCAATTGGATTGCTGATATTCGAACCCTCTTGAAGTCTTTCTCTCGGTTTCTTTCCATCATGAGTACATGGAATCGAATTCAACAGCTCATTCTCTAG
Protein sequenceShow/hide protein sequence
MKEGYRCITFLSDVFEEGGDCGSCACVVKINTDGACENCKSRIGVLLQDDRFGIVVAMVDVHQGIGPYLAEIYAIREGLRLALRLGLKWVESDSLNAINMIHQDTKWQDE
AANWIADIRTLLKSFSRFLSIMSTWNRIQQLIL