CuGenDBv2

Gene ID	Moc09g05360
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	DNA-directed RNA polymerases II, IV and V subunit 11-like
Genome location	chr9:4125110..4126394
RNA-Seq Expression	Moc09g05360
Synteny	Moc09g05360
Gene Ontology terms	GO:0006366 - transcription by RNA polymerase II (biological process) GO:0005665 - RNA polymerase II, core complex (cellular component) GO:0001055 - RNA polymerase II activity (molecular function) GO:0003677 - DNA binding (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR008193 - DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site IPR009025 - DNA-directed RNA polymerase, RBP11-like dimerisation domain IPR036603 - RNA polymerase, RBP11-like subunit IPR037685 - RNA polymerase RBP11

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004135939.1 DNA-directed RNA polymerases II, IV and V subunit 11 isoform X3 [Cucumis sativus]

5.0e-54

92.24

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHT+GNILRMQLHRDDNVLFA YQLPHPLKYRIL+RI TASQSSPMQAYNQA+NDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LKFELESELSRFSRAY
        LK+ELE E+SRFSRAY
Subjt:  LKFELESELSRFSRAY

XP_008461312.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucumis melo]

1.7e-54

93.1

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHT+GNILRMQLHRDDNVLFA YQLPHPLKYRIL+RI TASQSSPMQAYNQA+NDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LKFELESELSRFSRAY
        LK+ELESE+SRFSRAY
Subjt:  LKFELESELSRFSRAY

XP_022150995.1 DNA-directed RNA polymerases II, IV and V subunit 11-like [Momordica charantia]

4.4e-58

100

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LKFELESELSRFSRAY
        LKFELESELSRFSRAY
Subjt:  LKFELESELSRFSRAY

XP_023004699.1 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 [Cucurbita maxima]

1.2e-52

89.66

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHT+GNI+RMQLHRDDNVLFAAYQLPHPLKYRIL+RI TASQSSPMQAYNQA+NDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LKFELESELSRFSRAY
        LK+ELE   SRFSR+Y
Subjt:  LKFELESELSRFSRAY

XP_038899336.1 DNA-directed RNA polymerases II, IV and V subunit 11-like [Benincasa hispida]

9.5e-53

90.52

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHT+G+ILRMQLHRDDNVLFA YQLPHPLKYRIL+RI TASQSSPMQAYNQA+NDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LKFELESELSRFSRAY
        LK+ELE E+SRFSR Y
Subjt:  LKFELESELSRFSRAY

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CFN3 DNA-directed RNA polymerases II, IV and V subunit 11-like

8.4e-55

93.1

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHT+GNILRMQLHRDDNVLFA YQLPHPLKYRIL+RI TASQSSPMQAYNQA+NDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LKFELESELSRFSRAY
        LK+ELESE+SRFSRAY
Subjt:  LKFELESELSRFSRAY

A0A6J1DA06 DNA-directed RNA polymerases II, IV and V subunit 11-like

2.1e-58

100

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LKFELESELSRFSRAY
        LKFELESELSRFSRAY
Subjt:  LKFELESELSRFSRAY

A0A6J1H8G6 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1

7.8e-53

89.66

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHT+GNI+RMQLHRDDNVLFAAYQLPHPLKYRIL+RI TASQSSPMQAYNQA+NDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LKFELESELSRFSRAY
        LK+ELE   SRFSR Y
Subjt:  LKFELESELSRFSRAY

A0A6J1KVB7 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X2

5.6e-51

88.79

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHT+GNI+RMQLHRDDNVLFAAYQLPHPLKYRIL+R  TASQSSPMQAYNQA+NDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LKFELESELSRFSRAY
        LK+ELE   SRFSR+Y
Subjt:  LKFELESELSRFSRAY

A0A6J1KX24 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1

6.0e-53

89.66

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHT+GNI+RMQLHRDDNVLFAAYQLPHPLKYRIL+RI TASQSSPMQAYNQA+NDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LKFELESELSRFSRAY
        LK+ELE   SRFSR+Y
Subjt:  LKFELESELSRFSRAY

SwissProt top hits

e value

%identity

Alignment

P52435 DNA-directed RNA polymerase II subunit RPB11-a

8.1e-23

46.08

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MN P  +E F++ EG KK++  +DTK+ NA  F + +EDHT+GNI++ QL +D  VLFA Y++PHPL+++I+IR+ T    SP +A+  A+ DL  EL  
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LK
        L+
Subjt:  LK

Q32P79 DNA-directed RNA polymerase II subunit RPB11

8.1e-23

46.08

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MN P  +E F++ EG KK++  +DTK+ NA  F + +EDHT+GNI++ QL +D  VLFA Y++PHPL+++I+IR+ T    SP +A+  A+ DL  EL  
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LK
        L+
Subjt:  LK

Q38859 DNA-directed RNA polymerases II, IV and V subunit 11

3.9e-49

75.86

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F +EREDHT+GNI+RMQLHRD+NVLFA YQLPHPLKY+I++RIHT SQSSPMQAYNQA+NDLDKELD+
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LKFELESELSRFSRAY
        LK + E+E+++FS  +
Subjt:  LKFELESELSRFSRAY

Q86JJ5 DNA-directed RNA polymerase II subunit rpb11

4.3e-24

47.06

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MN PDR+E FV+P+GAKKV+  RDTKI NA+ F + +EDHT+GN++RMQL  D +++FA Y++PHPL++ + IRI T + ++P++   +++  L +E   
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LK
        L+
Subjt:  LK

Q9VJE4 DNA-directed RNA polymerase II subunit RPB11

8.1e-23

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKEL
        MN P  +E F++ EG KK+  E DTK+ NAA F + +EDHT+GN++R QL +D NVLFA Y++PHPL+++ +IRI T +  SP +A+  A+ DL  EL
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKEL

Arabidopsis top hits

e value

%identity

Alignment

AT3G52090.1 DNA-directed RNA polymerase, RBP11-like

2.8e-50

75.86

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH
        MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F +EREDHT+GNI+RMQLHRD+NVLFA YQLPHPLKY+I++RIHT SQSSPMQAYNQA+NDLDKELD+
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDH

Query:  LKFELESELSRFSRAY
        LK + E+E+++FS  +
Subjt:  LKFELESELSRFSRAY

AT3G52090.2 DNA-directed RNA polymerase, RBP11-like

1.6e-45

60.27

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIR--------------------------
        MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F +EREDHT+GNI+RMQLHRD+NVLFA YQLPHPLKY+I++R                          
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIR--------------------------

Query:  ----IHTASQSSPMQAYNQAVNDLDKELDHLKFELESELSRFSRAY
            IHT SQSSPMQAYNQA+NDLDKELD+LK + E+E+++FS  +
Subjt:  ----IHTASQSSPMQAYNQAVNDLDKELDHLKFELESELSRFSRAY

Sequences

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CDS sequence

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ATGAACGTCCCCGATCGTTACGAGCGATTCGTCGTGCCCGAGGGCGCCAAGAAGGTTTCATACGAGAGAGATACGAAGATCATGAACGCGGCGACCTTCATACTAGAGAG
AGAGGATCATACCGTCGGAAACATCCTCCGCATGCAACTTCACAGAGACGATAATGTGTTGTTCGCTGCATACCAGCTTCCGCACCCTCTTAAGTACAGAATACTTATCC
GGATACACACAGCTAGCCAATCTTCACCGATGCAGGCGTATAATCAAGCTGTAAATGATTTGGACAAGGAGCTTGACCATTTGAAATTTGAGCTTGAGAGTGAGCTTTCA
AGGTTCTCGAGGGCCTATTAG

mRNA sequence

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Protein sequence

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MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAAYQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDHLKFELESELS
RFSRAY

Moc09g05360 (gene) of Bitter gourd (OHB3-1) v2 genome