CuGenDBv2

Gene ID	Moc09g07030
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr9:5521902..5523143
RNA-Seq Expression	Moc09g07030
Synteny	Moc09g07030
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR036875 - Zinc finger, CCHC-type superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAF7121453.1 hypothetical protein RHSIM_Rhsim13G0116100 [Rhododendron simsii]

6.2e-54

41.48

Show/hide

Query:  EENTSVNSHINKVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVE------
        ++  SV  H++    LINQL+++K+   +E+ A+ LL+SLP+SWET+   +SNS     +    + D    EE RRK  G   TSV   AL V+      
Subjt:  EENTSVNSHINKVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVE------

Query:  ---KGREKVASDDRQQKRSRRNWK--RDAECFHCHKKGHIKKNCRILKEDLKRYMT-------ESNAVVDDA---LVCVDSNTEIGNQSSEWVIDSAASV
            G ++  S DR + +SR   K   + ECFHCHK GH++K CRIL+++LK+          ++ AV  D    +VC D    +  Q   WVIDS AS 
Subjt:  ---KGREKVASDDRQQKRSRRNWK--RDAECFHCHKKGHIKKNCRILKEDLKRYMT-------ESNAVVDDA---LVCVDSNTEIGNQSSEWVIDSAASV

Query:  HISSNRRLFTSFRRGNRGHVRMGNGRLSKTKGIGNIRLKTNSGTELLLRDVRYVPSIKMNLISTGKLDDDVYQSEFGGNQWKLTKGSKLVAIGHRRSTVY
        H++S R  F S+  G+ GHVRMGN  +SK  G+G++ L+TN+G +LLL+DVR+VP I++NLIS GKLDD+ Y+++FG  +WKL+KGS +VA G + ST+Y
Subjt:  HISSNRRLFTSFRRGNRGHVRMGNGRLSKTKGIGNIRLKTNSGTELLLRDVRYVPSIKMNLISTGKLDDDVYQSEFGGNQWKLTKGSKLVAIGHRRSTVY

Query:  TSQLSVASGSL
          Q  ++ G +
Subjt:  TSQLSVASGSL

KAF7129225.1 hypothetical protein RHSIM_Rhsim10G0050800 [Rhododendron simsii]

3.6e-54

41.8

Show/hide

Query:  EENTSVNSHINKVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVE-KGREK
        ++  SV  H++    LINQL+++K+   +E+ A+ LL+SLP+SWET+   +SNS     +    + D    EE RRK  G   TSV   AL V+ +GR +
Subjt:  EENTSVNSHINKVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVE-KGREK

Query:  V--------ASDDRQQKRSRRNWK--RDAECFHCHKKGHIKKNCRILKEDLKR-------YMTESNAVVDDA---LVCVDSNTEIGNQSSEWVIDSAASV
        +         S DR + +SR   K   + ECFHCHK GH++K CRIL+++LK+          ++ AV  D    +VC D    +  Q   WVIDS AS 
Subjt:  V--------ASDDRQQKRSRRNWK--RDAECFHCHKKGHIKKNCRILKEDLKR-------YMTESNAVVDDA---LVCVDSNTEIGNQSSEWVIDSAASV

Query:  HISSNRRLFTSFRRGNRGHVRMGNGRLSKTKGIGNIRLKTNSGTELLLRDVRYVPSIKMNLISTGKLDDDVYQSEFGGNQWKLTKGSKLVAIGHRRSTVY
        H++S R  F S+  G+ GHVRMGN  +SK  G+G++ L+TN+G +LLL+DVR+VP+I++NLIS GKLDD+ Y+++FG  +WKL+KGS +VA G + ST+Y
Subjt:  HISSNRRLFTSFRRGNRGHVRMGNGRLSKTKGIGNIRLKTNSGTELLLRDVRYVPSIKMNLISTGKLDDDVYQSEFGGNQWKLTKGSKLVAIGHRRSTVY

Query:  TSQLSVASGSL
          Q  ++ G +
Subjt:  TSQLSVASGSL

RVW14266.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

7.8e-57

Show/hide

Query:  EENTSVNSHINKVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVE---KGR
        +E T +  H+N++  ++NQLA++KITF DE+ A+ LL+SLPESWET+   VSNS  D  +  S++  + + EE RRK SG    S    AL +E   +GR
Subjt:  EENTSVNSHINKVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVE---KGR

Query:  EK-VASDDRQQKRSRRN--WKRDAECFHCHKKGHIKKNCRILK-------EDLKRYMTESNAVVDDALVCV--DSNTEIGNQSSEWVIDSAASVHISSNR
         K  AS +R + R R +   K+D EC++CHKKGH+K+ CR LK       ++ ++   ++  V D  L+ +  D +  +  Q ++WVIDS AS H++S  
Subjt:  EK-VASDDRQQKRSRRN--WKRDAECFHCHKKGHIKKNCRILK-------EDLKRYMTESNAVVDDALVCV--DSNTEIGNQSSEWVIDSAASVHISSNR

Query:  RLFTSFRRGNRGHVRMGNGRLSKTKGIGNIRLKTNSGTELLLRDVRYVPSIKMNLISTGKLDDDVYQSEFGGNQWKLTKGSKLVAIGHRRSTVYTSQLSV
          FTS+ +G+ G+VRMGN  +SK  G+G+I L+TN+G +LLLRDVR+VP I++NLISTGKLDD+ Y + F   +WKL+KGS +VA G +  ++YT Q  +
Subjt:  RLFTSFRRGNRGHVRMGNGRLSKTKGIGNIRLKTNSGTELLLRDVRYVPSIKMNLISTGKLDDDVYQSEFGGNQWKLTKGSKLVAIGHRRSTVYTSQLSV

RVW84195.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

7.8e-57

Show/hide

Query:  EENTSVNSHINKVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVE---KGR
        +E T +  H+N++  ++NQLA++KITF DE+ A+ LL+SLPESWET+   VSNS  D  +  S++  + + EE RRK SG    S    AL +E   +GR
Subjt:  EENTSVNSHINKVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVE---KGR

Query:  EK-VASDDRQQKRSRRN--WKRDAECFHCHKKGHIKKNCRILK-------EDLKRYMTESNAVVDDALVCV--DSNTEIGNQSSEWVIDSAASVHISSNR
         K  AS +R + R R +   K+D EC++CHKKGH+K+ CR LK       ++ ++   ++  V D  L+ +  D +  +  Q ++WVIDS AS H++S  
Subjt:  EK-VASDDRQQKRSRRN--WKRDAECFHCHKKGHIKKNCRILK-------EDLKRYMTESNAVVDDALVCV--DSNTEIGNQSSEWVIDSAASVHISSNR

Query:  RLFTSFRRGNRGHVRMGNGRLSKTKGIGNIRLKTNSGTELLLRDVRYVPSIKMNLISTGKLDDDVYQSEFGGNQWKLTKGSKLVAIGHRRSTVYTSQLSV
          FTS+ +G+ G+VRMGN  +SK  G+G+I L+TN+G +LLLRDVR+VP I++NLISTGKLDD+ Y + F   +WKL+KGS +VA G +  ++YT Q  +
Subjt:  RLFTSFRRGNRGHVRMGNGRLSKTKGIGNIRLKTNSGTELLLRDVRYVPSIKMNLISTGKLDDDVYQSEFGGNQWKLTKGSKLVAIGHRRSTVYTSQLSV

RVW94144.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

8.6e-56

43.33

Show/hide

Query:  EENTSVNSHINKVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAV---EKGR
        +E T +  H+N++  ++NQLA++KITF DE+ A+ LL+SLPESWET+   VSNS  D  +  S++  + + EE RRK SG    S    AL +   E+G+
Subjt:  EENTSVNSHINKVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAV---EKGR

Query:  EK-VASDDRQQKRSRRN--WKRDAECFHCHKKGHIKKNCRILK-------EDLKRYMTESNAVVDDALVCV--DSNTEIGNQSSEWVIDSAASVHISSNR
         K  AS +R + R R +   K+D EC++CHKKGH+K+ CR LK       ++ ++   ++  V D  L+ +  D +  +  Q ++WVIDS AS H++S  
Subjt:  EK-VASDDRQQKRSRRN--WKRDAECFHCHKKGHIKKNCRILK-------EDLKRYMTESNAVVDDALVCV--DSNTEIGNQSSEWVIDSAASVHISSNR

Query:  RLFTSFRRGNRGHVRMGNGRLSKTKGIGNIRLKTNSGTELLLRDVRYVPSIKMNLISTGKLDDDVYQSEFGGNQWKLTKGSKLVAIGHRRSTVYTSQLSV
          FTS+ +G+ G+VRMGN  +SK  G+G+I L+TN+G +LLLRDVR+VP I++NLIS GKLDD+ Y + F   +WKL+KGS +VA G +  ++YT Q  +
Subjt:  RLFTSFRRGNRGHVRMGNGRLSKTKGIGNIRLKTNSGTELLLRDVRYVPSIKMNLISTGKLDDDVYQSEFGGNQWKLTKGSKLVAIGHRRSTVYTSQLSV

TrEMBL top hits

e value

%identity

Alignment

A0A438BTH6 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.8e-57

Show/hide

Query:  EENTSVNSHINKVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVE---KGR
        +E T +  H+N++  ++NQLA++KITF DE+ A+ LL+SLPESWET+   VSNS  D  +  S++  + + EE RRK SG    S    AL +E   +GR
Subjt:  EENTSVNSHINKVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVE---KGR

Query:  EK-VASDDRQQKRSRRN--WKRDAECFHCHKKGHIKKNCRILK-------EDLKRYMTESNAVVDDALVCV--DSNTEIGNQSSEWVIDSAASVHISSNR
         K  AS +R + R R +   K+D EC++CHKKGH+K+ CR LK       ++ ++   ++  V D  L+ +  D +  +  Q ++WVIDS AS H++S  
Subjt:  EK-VASDDRQQKRSRRN--WKRDAECFHCHKKGHIKKNCRILK-------EDLKRYMTESNAVVDDALVCV--DSNTEIGNQSSEWVIDSAASVHISSNR

Query:  RLFTSFRRGNRGHVRMGNGRLSKTKGIGNIRLKTNSGTELLLRDVRYVPSIKMNLISTGKLDDDVYQSEFGGNQWKLTKGSKLVAIGHRRSTVYTSQLSV
          FTS+ +G+ G+VRMGN  +SK  G+G+I L+TN+G +LLLRDVR+VP I++NLISTGKLDD+ Y + F   +WKL+KGS +VA G +  ++YT Q  +
Subjt:  RLFTSFRRGNRGHVRMGNGRLSKTKGIGNIRLKTNSGTELLLRDVRYVPSIKMNLISTGKLDDDVYQSEFGGNQWKLTKGSKLVAIGHRRSTVYTSQLSV

A0A438CGI4 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.4e-50

39.67

Show/hide

Query:  EENTSVNSHINKVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVEK-GREK
        ++ T +  H+N    +INQLA + I F +EV  + LL +LP+SWET +T++SNS  D  +    +    + EE+RRK  G  S   Q S L +EK GR K
Subjt:  EENTSVNSHINKVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVEK-GREK

Query:  V-ASDDRQQKRSRRNWKRDAECFHCHKKGHIKKNCRILKEDLKRYMTESN------------AVVDDALVCVDSN-TEIGNQSSEWVIDSAASVHISSNR
             +R + +S+ N   + EC +CH KGHIKK CR LK D+K+   +                  D L+  DS+      Q + WVIDS AS+H +  +
Subjt:  V-ASDDRQQKRSRRNWKRDAECFHCHKKGHIKKNCRILKEDLKRYMTESN------------AVVDDALVCVDSN-TEIGNQSSEWVIDSAASVHISSNR

Query:  RLFTSFRRGNRGHVRMGNGRLSKTKGIGNIRLKTNSGTELLLRDVRYVPSIKMNLISTGKLDDDVYQSEFGGNQWKLTKGSKLVAIGHRRSTVYTSQLSV
          FTS+  G+ G VRMGN   +K  G+G++RL+T++GT L L++V+++P I+MNLISTGKLDD+ + + F  +QWKLT+GS ++A G++ S++Y  Q  V
Subjt:  RLFTSFRRGNRGHVRMGNGRLSKTKGIGNIRLKTNSGTELLLRDVRYVPSIKMNLISTGKLDDDVYQSEFGGNQWKLTKGSKLVAIGHRRSTVYTSQLSV

Query:  ASGSL
           S+
Subjt:  ASGSL

A0A438E432 Retrovirus-related Pol polyprotein from transposon TNT 1-94

6.9e-51

44.24

Show/hide

Query:  VKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVE---KGREK-VASDDRQQKRSRRN--WKR
        +KITF DE+ A+ LL+SLPESWET+   VSNS  D  +  S++  + + EE RRK SG    S    AL +E   +GR K  AS +R + R R +   K+
Subjt:  VKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVE---KGREK-VASDDRQQKRSRRN--WKR

Query:  DAECFHCHKKGHIKKNCRILK-------EDLKRYMTESNAVVDDALVCV--DSNTEIGNQSSEWVIDSAASVHISSNRRLFTSFRRGNRGHVRMGNGRLS
        D EC++CHKKGH+K+ CR LK       ++ ++   ++  V D  L+ +  D +  +  Q ++WVIDS AS H++S    FTS+ +G+ G+VRMGN  +S
Subjt:  DAECFHCHKKGHIKKNCRILK-------EDLKRYMTESNAVVDDALVCV--DSNTEIGNQSSEWVIDSAASVHISSNRRLFTSFRRGNRGHVRMGNGRLS

Query:  KTKGIGNIRLKTNSGTELLLRDVRYVPSIKMNLISTGKLDDDVYQSEFGGNQWKLTKGSKLVAIGHRRSTVYTSQLSV
        K  G+G+I L+TN+G +LLLRDVR+VP I++NLIS GKLDD+ Y + F   +WKL+KGS +VA G +  ++YT Q  +
Subjt:  KTKGIGNIRLKTNSGTELLLRDVRYVPSIKMNLISTGKLDDDVYQSEFGGNQWKLTKGSKLVAIGHRRSTVYTSQLSV

A0A438HI91 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.8e-57

Show/hide

Query:  EENTSVNSHINKVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVE---KGR
        +E T +  H+N++  ++NQLA++KITF DE+ A+ LL+SLPESWET+   VSNS  D  +  S++  + + EE RRK SG    S    AL +E   +GR
Subjt:  EENTSVNSHINKVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVE---KGR

Query:  EK-VASDDRQQKRSRRN--WKRDAECFHCHKKGHIKKNCRILK-------EDLKRYMTESNAVVDDALVCV--DSNTEIGNQSSEWVIDSAASVHISSNR
         K  AS +R + R R +   K+D EC++CHKKGH+K+ CR LK       ++ ++   ++  V D  L+ +  D +  +  Q ++WVIDS AS H++S  
Subjt:  EK-VASDDRQQKRSRRN--WKRDAECFHCHKKGHIKKNCRILK-------EDLKRYMTESNAVVDDALVCV--DSNTEIGNQSSEWVIDSAASVHISSNR

Query:  RLFTSFRRGNRGHVRMGNGRLSKTKGIGNIRLKTNSGTELLLRDVRYVPSIKMNLISTGKLDDDVYQSEFGGNQWKLTKGSKLVAIGHRRSTVYTSQLSV
          FTS+ +G+ G+VRMGN  +SK  G+G+I L+TN+G +LLLRDVR+VP I++NLISTGKLDD+ Y + F   +WKL+KGS +VA G +  ++YT Q  +
Subjt:  RLFTSFRRGNRGHVRMGNGRLSKTKGIGNIRLKTNSGTELLLRDVRYVPSIKMNLISTGKLDDDVYQSEFGGNQWKLTKGSKLVAIGHRRSTVYTSQLSV

A0A438IBT7 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.2e-56

43.33

Show/hide

Query:  EENTSVNSHINKVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAV---EKGR
        +E T +  H+N++  ++NQLA++KITF DE+ A+ LL+SLPESWET+   VSNS  D  +  S++  + + EE RRK SG    S    AL +   E+G+
Subjt:  EENTSVNSHINKVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAV---EKGR

Query:  EK-VASDDRQQKRSRRN--WKRDAECFHCHKKGHIKKNCRILK-------EDLKRYMTESNAVVDDALVCV--DSNTEIGNQSSEWVIDSAASVHISSNR
         K  AS +R + R R +   K+D EC++CHKKGH+K+ CR LK       ++ ++   ++  V D  L+ +  D +  +  Q ++WVIDS AS H++S  
Subjt:  EK-VASDDRQQKRSRRN--WKRDAECFHCHKKGHIKKNCRILK-------EDLKRYMTESNAVVDDALVCV--DSNTEIGNQSSEWVIDSAASVHISSNR

Query:  RLFTSFRRGNRGHVRMGNGRLSKTKGIGNIRLKTNSGTELLLRDVRYVPSIKMNLISTGKLDDDVYQSEFGGNQWKLTKGSKLVAIGHRRSTVYTSQLSV
          FTS+ +G+ G+VRMGN  +SK  G+G+I L+TN+G +LLLRDVR+VP I++NLIS GKLDD+ Y + F   +WKL+KGS +VA G +  ++YT Q  +
Subjt:  RLFTSFRRGNRGHVRMGNGRLSKTKGIGNIRLKTNSGTELLLRDVRYVPSIKMNLISTGKLDDDVYQSEFGGNQWKLTKGSKLVAIGHRRSTVYTSQLSV

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.6e-36

32.89

Show/hide

Query:  MEENTSVNSHINKVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSV--QGSALAVEKGR
        M E T+  SH+N    LI QLA++ +   +E  AI LL SLP S++ + T + +  G  +++  ++  A +  E  RK    +  ++  +G   + ++  
Subjt:  MEENTSVNSHINKVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSV--QGSALAVEKGR

Query:  EKVASDDRQQKRSRRNWKRDAECFHCHKKGHIKKNC---RILKEDLKRYMTESNAVV-----DDALVCVDSNTE---IGNQSSEWVIDSAASVHISSNRR
                + K   R+  R   C++C++ GH K++C   R  K +      + N        D+ ++ ++   E   +    SEWV+D+AAS H +  R 
Subjt:  EKVASDDRQQKRSRRNWKRDAECFHCHKKGHIKKNC---RILKEDLKRYMTESNAVV-----DDALVCVDSNTE---IGNQSSEWVIDSAASVHISSNRR

Query:  LFTSFRRGNRGHVRMGNGRLSKTKGIGNIRLKTNSGTELLLRDVRYVPSIKMNLISTGKLDDDVYQSEFGGNQWKLTKGSKLVAIGHRRSTVYTSQLSVA
        LF  +  G+ G V+MGN   SK  GIG+I +KTN G  L+L+DVR+VP ++MNLIS   LD D Y+S F   +W+LTKGS ++A G  R T+Y +   + 
Subjt:  LFTSFRRGNRGHVRMGNGRLSKTKGIGNIRLKTNSGTELLLRDVRYVPSIKMNLISTGKLDDDVYQSEFGGNQWKLTKGSKLVAIGHRRSTVYTSQLSVA

Query:  SGSL
         G L
Subjt:  SGSL

P25601 Putative transposon Ty5-1 protein YCL075W

3.2e-05

34.48

Show/hide

Query:  VCVDSNTEIGNQSSEWVIDSAASVHISSNRRLFTSFRRGNRGHVRMGNGRLSKTKGIGNIRLKTNSGTELLLRDVRYVPSIKMNLIS
        +C+ S+T    +SSEW+ D+  + H+  +R +F+SF R +R     G G      G G + + T     + L DV YVP + +NLIS
Subjt:  VCVDSNTEIGNQSSEWVIDSAASVHISSNRRLFTSFRRGNRGHVRMGNGRLSKTKGIGNIRLKTNSGTELLLRDVRYVPSIKMNLIS

Arabidopsis top hits

e value

%identity

Alignment

AT3G21000.1 Gag-Pol-related retrotransposon family protein

5.6e-05

23.49

Show/hide

Query:  KRSRRNWKRDAECFHCHKKGHIKKNCRILKEDLKRYMTESNAVVDDALVCVDSNTEIGNQSSEWVIDSAASVHISSNRRLFTSFRRGNRGHVRMGNGRLS
        K  R   K +  C  C+K  H +++C+  +    +   E   VVD  L  V +          W+I   A ++++   + FT+  R  +  V   +G + 
Subjt:  KRSRRNWKRDAECFHCHKKGHIKKNCRILKEDLKRYMTESNAVVDDALVCVDSNTEIGNQSSEWVIDSAASVHISSNRRLFTSFRRGNRGHVRMGNGRLS

Query:  KTKGIGNIRLKTNSGTELLLRDVRYVPSIKMNLISTGKLDDDVYQSEFG
          +G G+++++   G +  +R+V +VP +  N++S GK+    Y    G
Subjt:  KTKGIGNIRLKTNSGTELLLRDVRYVPSIKMNLISTGKLDDDVYQSEFG

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAAGAGAATACTTCTGTCAATTCCCACATAAATAAGGTCACAAAATTAATCAATCAATTGGCATCAGTTAAGATTACTTTTAGTGACGAAGTGAATGCTATTCAGTT
GCTAACATCTTTACCTGAAAGTTGGGAAACGATGAAGACAGCAGTGTCCAATTCGTTAGGAGACAAATCTTTGAAATTTTCAGAAATTTGTGATGCGGCAATTGCTGAAG
AAATTCGCAGAAAGGGGAGTGGAAAAGAGTCTACTTCCGTACAAGGCTCAGCATTGGCTGTCGAAAAAGGTAGAGAGAAAGTTGCGTCTGATGACAGGCAGCAGAAGCGT
AGTAGGAGGAATTGGAAGAGAGATGCTGAATGTTTTCACTGCCACAAAAAAGGTCACATCAAGAAAAACTGTAGAATATTAAAAGAGGATCTGAAAAGGTATATGACGGA
GTCAAATGCAGTTGTAGACGATGCCCTCGTCTGTGTTGACAGCAACACAGAAATAGGAAACCAGTCATCGGAGTGGGTAATAGACAGCGCAGCTTCAGTACACATATCTT
CAAACAGAAGATTATTCACATCTTTCAGAAGAGGCAATCGCGGCCACGTGAGGATGGGGAATGGAAGACTTTCCAAGACTAAAGGGATTGGAAATATACGATTGAAGACC
AATAGTGGGACTGAGTTATTACTGCGAGATGTCAGGTATGTACCCAGTATCAAAATGAACCTTATCTCTACAGGTAAGTTGGACGATGATGTTTATCAAAGTGAGTTTGG
TGGGAACCAGTGGAAGCTCACCAAAGGATCTAAGTTGGTGGCAATTGGCCATAGAAGATCTACAGTTTACACGTCGCAATTGAGTGTTGCCAGTGGATCATTGAAACAGT
GGATGCAAGTTGCAGATGGTGTCCAAAGAGGTAGGACTGAGCCAGCAACAAAGACAACTAGAACAGATCAGGAGGATCTGCCATCAATTCAGAAACAACAATTGAGAAGT
CAAAGAACGAGAACAAGTTCTTTAGGTTGTTTGGGATTATCTCCAGTTGTCAGACGAAAGGGTGAATTGATGAAGTCGCGTCAGCGAAGAGTTGCATCAGAGAAGATAAA
CTCAGTAGGTGCTGAGGTAAAGAATGAAGTTTCAATTCTGGCAGCAGACTTGAATATAGTTGTCAAGTCATCAGTGGGAAGTTCTTTCTTCAAGAATCAGTGTTTGAGAA
CGAAGAAGGAAGCTTCAGATATCACCACTTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MEENTSVNSHINKVTKLINQLASVKITFSDEVNAIQLLTSLPESWETMKTAVSNSLGDKSLKFSEICDAAIAEEIRRKGSGKESTSVQGSALAVEKGREKVASDDRQQKR
SRRNWKRDAECFHCHKKGHIKKNCRILKEDLKRYMTESNAVVDDALVCVDSNTEIGNQSSEWVIDSAASVHISSNRRLFTSFRRGNRGHVRMGNGRLSKTKGIGNIRLKT
NSGTELLLRDVRYVPSIKMNLISTGKLDDDVYQSEFGGNQWKLTKGSKLVAIGHRRSTVYTSQLSVASGSLKQWMQVADGVQRGRTEPATKTTRTDQEDLPSIQKQQLRS
QRTRTSSLGCLGLSPVVRRKGELMKSRQRRVASEKINSVGAEVKNEVSILAADLNIVVKSSVGSSFFKNQCLRTKKEASDITT

Moc09g07030 (gene) of Bitter gourd (OHB3-1) v2 genome