; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc09g07220 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g07220
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionPentatricopeptide repeat-containing protein
Genome locationchr9:5676080..5676554
RNA-Seq ExpressionMoc09g07220
SyntenyMoc09g07220
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0068017.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]5.5e-4965.82Show/hide
Query:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHYS------------------
        MKE NV+TWN LI GLALAKSGEE IAWFKR DEEG EAD++TLVAVLCACSHS LV+ GR+IFR+L+ G +GFSPEIKHYS                  
Subjt:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHYS------------------

Query:  ----------SMWGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILAEMG
                  +MWGSLL G RA+G+LEVSE AARKLVE+EPENGAYYVVLSNI AEMG
Subjt:  ----------SMWGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILAEMG

KAG6575842.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]1.5e-4664.15Show/hide
Query:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEE-GFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHYS-----------------
        MK+ NV+TWNALI GLALAKSGEE IAWFKR +EE G EADE+TLVAVLCACSHS LVD GR+IF +++DG +GFSP I+HYS                 
Subjt:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEE-GFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHYS-----------------

Query:  -----------SMWGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILAEMG
                   +MWGSLL G RA GSLE+SEFAARKLVE+EPENGAYY VLSNI AEMG
Subjt:  -----------SMWGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILAEMG

XP_008451605.1 PREDICTED: pentatricopeptide repeat-containing protein At5g56310-like [Cucumis melo]5.5e-4965.82Show/hide
Query:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHYS------------------
        MKE NV+TWN LI GLALAKSGEE IAWFKR DEEG EAD++TLVAVLCACSHS LV+ GR+IFR+L+ G +GFSPEIKHYS                  
Subjt:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHYS------------------

Query:  ----------SMWGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILAEMG
                  +MWGSLL G RA+G+LEVSE AARKLVE+EPENGAYYVVLSNI AEMG
Subjt:  ----------SMWGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILAEMG

XP_022149919.1 pentatricopeptide repeat-containing protein At1g09190-like isoform X1 [Momordica charantia]1.3e-5574.68Show/hide
Query:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHYS------------------
        MKE NVFTWNALIKGLALAKSGEE IAWFKR DEEG EADE+TLVAVLCACSHS LV+KGREIFRALVDGSYGFSP IKH+S                  
Subjt:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHYS------------------

Query:  ----------SMWGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILAEMG
                  +MWGSLL GGRANGSLEVSEFAARKLVE+EPENGAYYVVLSNILAEMG
Subjt:  ----------SMWGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILAEMG

XP_022149927.1 pentatricopeptide repeat-containing protein At5g56310-like isoform X2 [Momordica charantia]1.3e-5574.68Show/hide
Query:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHYS------------------
        MKE NVFTWNALIKGLALAKSGEE IAWFKR DEEG EADE+TLVAVLCACSHS LV+KGREIFRALVDGSYGFSP IKH+S                  
Subjt:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHYS------------------

Query:  ----------SMWGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILAEMG
                  +MWGSLL GGRANGSLEVSEFAARKLVE+EPENGAYYVVLSNILAEMG
Subjt:  ----------SMWGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILAEMG

TrEMBL top hitse value%identityAlignment
A0A1S3BRY1 pentatricopeptide repeat-containing protein At5g56310-like2.6e-4965.82Show/hide
Query:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHYS------------------
        MKE NV+TWN LI GLALAKSGEE IAWFKR DEEG EAD++TLVAVLCACSHS LV+ GR+IFR+L+ G +GFSPEIKHYS                  
Subjt:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHYS------------------

Query:  ----------SMWGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILAEMG
                  +MWGSLL G RA+G+LEVSE AARKLVE+EPENGAYYVVLSNI AEMG
Subjt:  ----------SMWGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILAEMG

A0A5A7VLB7 Pentatricopeptide repeat-containing protein2.6e-4965.82Show/hide
Query:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHYS------------------
        MKE NV+TWN LI GLALAKSGEE IAWFKR DEEG EAD++TLVAVLCACSHS LV+ GR+IFR+L+ G +GFSPEIKHYS                  
Subjt:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHYS------------------

Query:  ----------SMWGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILAEMG
                  +MWGSLL G RA+G+LEVSE AARKLVE+EPENGAYYVVLSNI AEMG
Subjt:  ----------SMWGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILAEMG

A0A6J1D8G0 pentatricopeptide repeat-containing protein At1g09190-like isoform X16.5e-5674.68Show/hide
Query:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHYS------------------
        MKE NVFTWNALIKGLALAKSGEE IAWFKR DEEG EADE+TLVAVLCACSHS LV+KGREIFRALVDGSYGFSP IKH+S                  
Subjt:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHYS------------------

Query:  ----------SMWGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILAEMG
                  +MWGSLL GGRANGSLEVSEFAARKLVE+EPENGAYYVVLSNILAEMG
Subjt:  ----------SMWGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILAEMG

A0A6J1D9C2 pentatricopeptide repeat-containing protein At5g56310-like isoform X26.5e-5674.68Show/hide
Query:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHYS------------------
        MKE NVFTWNALIKGLALAKSGEE IAWFKR DEEG EADE+TLVAVLCACSHS LV+KGREIFRALVDGSYGFSP IKH+S                  
Subjt:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHYS------------------

Query:  ----------SMWGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILAEMG
                  +MWGSLL GGRANGSLEVSEFAARKLVE+EPENGAYYVVLSNILAEMG
Subjt:  ----------SMWGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILAEMG

A0A6J1GP72 pentatricopeptide repeat-containing protein At5g56310-like7.2e-4764.15Show/hide
Query:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEE-GFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHYS-----------------
        MK+ NV+TWNALI GLALAKSGEE IAWFKR +EE G EADE+TLVAVLCACSHS LVD GR+IF +++DG +GFSP I+HYS                 
Subjt:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEE-GFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHYS-----------------

Query:  -----------SMWGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILAEMG
                   +MWGSLL G RA GSLE+SEFAARKLVE+EPENGAYY VLSNI AEMG
Subjt:  -----------SMWGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILAEMG

SwissProt top hitse value%identityAlignment
O23337 Pentatricopeptide repeat-containing protein At4g148201.2e-1931.61Show/hide
Query:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHYSSM----------------
        M   NV +W+++I  L++     + ++ F R  +E  E +E+T V VL  CSHS LV++G++IF ++ D  Y  +P+++HY  M                
Subjt:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHYSSM----------------

Query:  ------------WGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILA
                    WGSL+   R +G LE+ +FAA++++E+EP++    V++SNI A
Subjt:  ------------WGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILA

O82380 Pentatricopeptide repeat-containing protein At2g29760, chloroplastic4.7e-1931.65Show/hide
Query:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHY-------------------
        +++ +VF W+A+I GLA+   G E +  F +  E   + + +T   V CACSH+ LVD+   +F  + + +YG  PE KHY                   
Subjt:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHY-------------------

Query:  ---------SSMWGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILAEMG
                 +S+WG+LL   + + +L ++E A  +L+E+EP N   +V+LSNI A++G
Subjt:  ---------SSMWGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILAEMG

Q9LZ19 Pentatricopeptide repeat-containing protein At5g04780, mitochondrial7.2e-2034.84Show/hide
Query:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHYS------------------
        ++E N+  WN +I G A     +EV+  F++  ++G   +E+T  ++L  C H+ LV++GR  F+ L+  +YG SP + HYS                  
Subjt:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHYS------------------

Query:  ----------SMWGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILA
                  S+WGSLL   R   +LE++E AA KL E+EPEN   +V+LSNI A
Subjt:  ----------SMWGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILA

Q9SR01 Pentatricopeptide repeat-containing protein At3g04750, mitochondrial1.5e-2035.67Show/hide
Query:  ETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHY---------------------
        E +V  W ++I GLA   +G++ +  F R  EEG   + +TL+AVL ACSHS LV++G  +F  + D  +GF PE +HY                     
Subjt:  ETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHY---------------------

Query:  --------SSMWGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILAEMG
                 SMWGS+L   R    +E +E A  +L+++EPE    YV+LSNI A +G
Subjt:  --------SSMWGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILAEMG

Q9SY02 Pentatricopeptide repeat-containing protein At4g027501.1e-2034.81Show/hide
Query:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHYSSM----------------
        M   ++ +WN +I G +    GE  + +F+    EG + D+ T+VAVL ACSH+ LVDKGR+ F  +    YG  P  +HY+ M                
Subjt:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHYSSM----------------

Query:  ------------WGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILAEMG
                    WG+LL   R +G+ E++E AA K+  +EPEN   YV+LSN+ A  G
Subjt:  ------------WGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILAEMG

Arabidopsis top hitse value%identityAlignment
AT2G29760.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.3e-2031.65Show/hide
Query:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHY-------------------
        +++ +VF W+A+I GLA+   G E +  F +  E   + + +T   V CACSH+ LVD+   +F  + + +YG  PE KHY                   
Subjt:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHY-------------------

Query:  ---------SSMWGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILAEMG
                 +S+WG+LL   + + +L ++E A  +L+E+EP N   +V+LSNI A++G
Subjt:  ---------SSMWGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILAEMG

AT3G04750.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.0e-2135.67Show/hide
Query:  ETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHY---------------------
        E +V  W ++I GLA   +G++ +  F R  EEG   + +TL+AVL ACSHS LV++G  +F  + D  +GF PE +HY                     
Subjt:  ETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHY---------------------

Query:  --------SSMWGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILAEMG
                 SMWGS+L   R    +E +E A  +L+++EPE    YV+LSNI A +G
Subjt:  --------SSMWGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILAEMG

AT4G02750.1 Tetratricopeptide repeat (TPR)-like superfamily protein7.9e-2234.81Show/hide
Query:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHYSSM----------------
        M   ++ +WN +I G +    GE  + +F+    EG + D+ T+VAVL ACSH+ LVDKGR+ F  +    YG  P  +HY+ M                
Subjt:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHYSSM----------------

Query:  ------------WGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILAEMG
                    WG+LL   R +G+ E++E AA K+  +EPEN   YV+LSN+ A  G
Subjt:  ------------WGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILAEMG

AT4G14820.1 Pentatricopeptide repeat (PPR) superfamily protein8.8e-2131.61Show/hide
Query:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHYSSM----------------
        M   NV +W+++I  L++     + ++ F R  +E  E +E+T V VL  CSHS LV++G++IF ++ D  Y  +P+++HY  M                
Subjt:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHYSSM----------------

Query:  ------------WGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILA
                    WGSL+   R +G LE+ +FAA++++E+EP++    V++SNI A
Subjt:  ------------WGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILA

AT5G04780.1 Pentatricopeptide repeat (PPR) superfamily protein5.1e-2134.84Show/hide
Query:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHYS------------------
        ++E N+  WN +I G A     +EV+  F++  ++G   +E+T  ++L  C H+ LV++GR  F+ L+  +YG SP + HYS                  
Subjt:  MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHYS------------------

Query:  ----------SMWGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILA
                  S+WGSLL   R   +LE++E AA KL E+EPEN   +V+LSNI A
Subjt:  ----------SMWGSLLVGGRANGSLEVSEFAARKLVEIEPENGAYYVVLSNILA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGAGACTAATGTCTTTACTTGGAATGCACTCATTAAAGGGCTAGCTTTGGCCAAGAGTGGAGAGGAGGTCATTGCCTGGTTTAAGAGAAGTGATGAAGAAGGATT
TGAGGCTGATGAACTGACATTAGTGGCAGTGCTTTGTGCTTGTAGCCACTCCAGATTGGTGGACAAGGGCAGGGAGATCTTTCGAGCCTTGGTCGATGGGAGCTACGGGT
TTTCTCCCGAAATCAAACATTATTCATCAATGTGGGGGTCTTTGTTAGTTGGTGGTAGGGCTAATGGGAGCTTGGAAGTGAGCGAGTTTGCAGCAAGGAAGCTTGTTGAA
ATCGAGCCAGAGAATGGTGCATATTATGTTGTGTTGTCTAATATTCTTGCAGAGATGGGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGAGACTAATGTCTTTACTTGGAATGCACTCATTAAAGGGCTAGCTTTGGCCAAGAGTGGAGAGGAGGTCATTGCCTGGTTTAAGAGAAGTGATGAAGAAGGATT
TGAGGCTGATGAACTGACATTAGTGGCAGTGCTTTGTGCTTGTAGCCACTCCAGATTGGTGGACAAGGGCAGGGAGATCTTTCGAGCCTTGGTCGATGGGAGCTACGGGT
TTTCTCCCGAAATCAAACATTATTCATCAATGTGGGGGTCTTTGTTAGTTGGTGGTAGGGCTAATGGGAGCTTGGAAGTGAGCGAGTTTGCAGCAAGGAAGCTTGTTGAA
ATCGAGCCAGAGAATGGTGCATATTATGTTGTGTTGTCTAATATTCTTGCAGAGATGGGGTGA
Protein sequenceShow/hide protein sequence
MKETNVFTWNALIKGLALAKSGEEVIAWFKRSDEEGFEADELTLVAVLCACSHSRLVDKGREIFRALVDGSYGFSPEIKHYSSMWGSLLVGGRANGSLEVSEFAARKLVE
IEPENGAYYVVLSNILAEMG