CuGenDBv2

Gene ID	Moc09g08060
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Reverse transcriptase domain-containing protein
Genome location	chr9:6415304..6416218
RNA-Seq Expression	Moc09g08060
Synteny	Moc09g08060
Gene Ontology terms	GO:0005622 - intracellular (cellular component)
InterPro domains	IPR026960 - Reverse transcriptase zinc-binding domain

Homology

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GenBank top hits

e value

%identity

Alignment

CAN75156.1 hypothetical protein VITISV_042643 [Vitis vinifera]

9.9e-32

38.5

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Query:  NDEQLAWDLGLRRGLFDREVGGWADIMSRLDTTQIG-EGADKVGWFLDPSGAYTVKSGLKILFEDTPHLSPSVTSLLWKYSVPKKVKVLLWTLANRAVNT
        N   L+W+   RR L D E+     +MS L +  +    +D   W L  SG+++VKS    L +D+  L       LW   VP KVK L W +A+  VNT
Subjt:  NDEQLAWDLGLRRGLFDREVGGWADIMSRLDTTQIG-EGADKVGWFLDPSGAYTVKSGLKILFEDTPHLSPSVTSLLWKYSVPKKVKVLLWTLANRAVNT

Query:  ADRLQRRCPNWVISPSVCVLCKQNEESIDHTFLHCQFALRGWSFLLQIFGYSSCMPQNVEGWMNEAMRGWPFKGKAKILWNCAARALFWNLWMERNNRIF
         D+LQ R P   + P  C+LCK+N ESIDH FLHC   +  W  L  + G     P+++E  +  + RG     + KILW  A   L W +W ERNNRIF
Subjt:  ADRLQRRCPNWVISPSVCVLCKQNEESIDHTFLHCQFALRGWSFLLQIFGYSSCMPQNVEGWMNEAMRGWPFKGKAKILWNCAARALFWNLWMERNNRIF

KAB2623078.1 ribonuclease H protein [Pyrus ussuriensis x Pyrus communis]

1.7e-31

38.89

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Query:  LAWDLGLRRGLFDREVGGWADIMSRLDTTQIGEG-ADKVGWFLDPSGAYTVKSGLKILFED--TPHLSPSVTSLLWKYSVPKKVKVLLWTLANRAVNTAD
        L+W+   RR L + E+   A ++ +++  ++ +  AD   W LD SG +T KS    L  +    H  PS  S +WK  VP KVKVL+W +A   +NT D
Subjt:  LAWDLGLRRGLFDREVGGWADIMSRLDTTQIGEG-ADKVGWFLDPSGAYTVKSGLKILFED--TPHLSPSVTSLLWKYSVPKKVKVLLWTLANRAVNTAD

Query:  RLQRRCPNWVISPSVCVLCKQNEESIDHTFLHCQFALRGWSFLLQIFGYSSCMPQNVEGWMNEAMRGWPFKGKAKILWNCAARALFWNLWMERNNRIF
        ++QRR P   ISP  C LCK  EES++H FLHC + ++ W  L Q    S  +P+     ++          KAK LW C   A+FWN+W+ERN RIF
Subjt:  RLQRRCPNWVISPSVCVLCKQNEESIDHTFLHCQFALRGWSFLLQIFGYSSCMPQNVEGWMNEAMRGWPFKGKAKILWNCAARALFWNLWMERNNRIF

RVW16200.1 putative ribonuclease H protein [Vitis vinifera]

3.8e-31

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Query:  NDEQLAWDLGLRRGLFDREVGGWADIMSRLDTTQIG-EGADKVGWFLDPSGAYTVKSGLKILFEDTPHLSPSVTSLLWKYSVPKKVKVLLWTLANRAVNT
        N   L+W+   RR L D E+     +MS L +  +    +D   W L  SG+++VKS    L +D+  L       LW   VP KVK L W +A+  VNT
Subjt:  NDEQLAWDLGLRRGLFDREVGGWADIMSRLDTTQIG-EGADKVGWFLDPSGAYTVKSGLKILFEDTPHLSPSVTSLLWKYSVPKKVKVLLWTLANRAVNT

Query:  ADRLQRRCPNWVISPSVCVLCKQNEESIDHTFLHCQFALRGWSFLLQIFGYSSCMPQNVEGWMNEAMRGWPFKGKAKILWNCAARALFWNLWMERNNRIF
         D+LQ R P   + P  C+LCK N ESIDH FLHC   +  W  L  + G     P+++E  +  + +G     + KILW  A   L W +W ERNNRIF
Subjt:  ADRLQRRCPNWVISPSVCVLCKQNEESIDHTFLHCQFALRGWSFLLQIFGYSSCMPQNVEGWMNEAMRGWPFKGKAKILWNCAARALFWNLWMERNNRIF

RVW72196.1 Flowering time control protein FY [Vitis vinifera]

9.9e-32

38.5

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Query:  NDEQLAWDLGLRRGLFDREVGGWADIMSRLDTTQIG-EGADKVGWFLDPSGAYTVKSGLKILFEDTPHLSPSVTSLLWKYSVPKKVKVLLWTLANRAVNT
        N   L+W+   RR L D E+     +MS L +  +    +D   W L  SG+++VKS    L +D+  L       LW   VP KVK L W +A+  VNT
Subjt:  NDEQLAWDLGLRRGLFDREVGGWADIMSRLDTTQIG-EGADKVGWFLDPSGAYTVKSGLKILFEDTPHLSPSVTSLLWKYSVPKKVKVLLWTLANRAVNT

Query:  ADRLQRRCPNWVISPSVCVLCKQNEESIDHTFLHCQFALRGWSFLLQIFGYSSCMPQNVEGWMNEAMRGWPFKGKAKILWNCAARALFWNLWMERNNRIF
         D+LQ R P   + P  C+LCK+N ESIDH FLHC   +  W  L  + G     P+++E  +  + RG     + KILW  A   L W +W ERNNRIF
Subjt:  ADRLQRRCPNWVISPSVCVLCKQNEESIDHTFLHCQFALRGWSFLLQIFGYSSCMPQNVEGWMNEAMRGWPFKGKAKILWNCAARALFWNLWMERNNRIF

RVW90769.1 putative ribonuclease H protein [Vitis vinifera]

9.9e-32

38.5

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Query:  NDEQLAWDLGLRRGLFDREVGGWADIMSRLDTTQIG-EGADKVGWFLDPSGAYTVKSGLKILFEDTPHLSPSVTSLLWKYSVPKKVKVLLWTLANRAVNT
        N   L+W+   RR L D E+     +MS L +  +    +D   W L  SG+++VKS    L +D+  L       LW   VP KVK L W +A+  VNT
Subjt:  NDEQLAWDLGLRRGLFDREVGGWADIMSRLDTTQIG-EGADKVGWFLDPSGAYTVKSGLKILFEDTPHLSPSVTSLLWKYSVPKKVKVLLWTLANRAVNT

Query:  ADRLQRRCPNWVISPSVCVLCKQNEESIDHTFLHCQFALRGWSFLLQIFGYSSCMPQNVEGWMNEAMRGWPFKGKAKILWNCAARALFWNLWMERNNRIF
         D+LQ R P   + P  C+LCK+N ESIDH FLHC   +  W  L  + G     P+++E  +  + RG     + KILW  A   L W +W ERNNRIF
Subjt:  ADRLQRRCPNWVISPSVCVLCKQNEESIDHTFLHCQFALRGWSFLLQIFGYSSCMPQNVEGWMNEAMRGWPFKGKAKILWNCAARALFWNLWMERNNRIF

TrEMBL top hits

e value

%identity

Alignment

A0A438BZ68 Putative ribonuclease H protein

1.8e-31

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Query:  NDEQLAWDLGLRRGLFDREVGGWADIMSRLDTTQIG-EGADKVGWFLDPSGAYTVKSGLKILFEDTPHLSPSVTSLLWKYSVPKKVKVLLWTLANRAVNT
        N   L+W+   RR L D E+     +MS L +  +    +D   W L  SG+++VKS    L +D+  L       LW   VP KVK L W +A+  VNT
Subjt:  NDEQLAWDLGLRRGLFDREVGGWADIMSRLDTTQIG-EGADKVGWFLDPSGAYTVKSGLKILFEDTPHLSPSVTSLLWKYSVPKKVKVLLWTLANRAVNT

Query:  ADRLQRRCPNWVISPSVCVLCKQNEESIDHTFLHCQFALRGWSFLLQIFGYSSCMPQNVEGWMNEAMRGWPFKGKAKILWNCAARALFWNLWMERNNRIF
         D+LQ R P   + P  C+LCK N ESIDH FLHC   +  W  L  + G     P+++E  +  + +G     + KILW  A   L W +W ERNNRIF
Subjt:  ADRLQRRCPNWVISPSVCVLCKQNEESIDHTFLHCQFALRGWSFLLQIFGYSSCMPQNVEGWMNEAMRGWPFKGKAKILWNCAARALFWNLWMERNNRIF

A0A438GJ06 Flowering time control protein FY

4.8e-32

38.5

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Query:  NDEQLAWDLGLRRGLFDREVGGWADIMSRLDTTQIG-EGADKVGWFLDPSGAYTVKSGLKILFEDTPHLSPSVTSLLWKYSVPKKVKVLLWTLANRAVNT
        N   L+W+   RR L D E+     +MS L +  +    +D   W L  SG+++VKS    L +D+  L       LW   VP KVK L W +A+  VNT
Subjt:  NDEQLAWDLGLRRGLFDREVGGWADIMSRLDTTQIG-EGADKVGWFLDPSGAYTVKSGLKILFEDTPHLSPSVTSLLWKYSVPKKVKVLLWTLANRAVNT

Query:  ADRLQRRCPNWVISPSVCVLCKQNEESIDHTFLHCQFALRGWSFLLQIFGYSSCMPQNVEGWMNEAMRGWPFKGKAKILWNCAARALFWNLWMERNNRIF
         D+LQ R P   + P  C+LCK+N ESIDH FLHC   +  W  L  + G     P+++E  +  + RG     + KILW  A   L W +W ERNNRIF
Subjt:  ADRLQRRCPNWVISPSVCVLCKQNEESIDHTFLHCQFALRGWSFLLQIFGYSSCMPQNVEGWMNEAMRGWPFKGKAKILWNCAARALFWNLWMERNNRIF

A0A438I233 Putative ribonuclease H protein

4.8e-32

38.5

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Query:  NDEQLAWDLGLRRGLFDREVGGWADIMSRLDTTQIG-EGADKVGWFLDPSGAYTVKSGLKILFEDTPHLSPSVTSLLWKYSVPKKVKVLLWTLANRAVNT
        N   L+W+   RR L D E+     +MS L +  +    +D   W L  SG+++VKS    L +D+  L       LW   VP KVK L W +A+  VNT
Subjt:  NDEQLAWDLGLRRGLFDREVGGWADIMSRLDTTQIG-EGADKVGWFLDPSGAYTVKSGLKILFEDTPHLSPSVTSLLWKYSVPKKVKVLLWTLANRAVNT

Query:  ADRLQRRCPNWVISPSVCVLCKQNEESIDHTFLHCQFALRGWSFLLQIFGYSSCMPQNVEGWMNEAMRGWPFKGKAKILWNCAARALFWNLWMERNNRIF
         D+LQ R P   + P  C+LCK+N ESIDH FLHC   +  W  L  + G     P+++E  +  + RG     + KILW  A   L W +W ERNNRIF
Subjt:  ADRLQRRCPNWVISPSVCVLCKQNEESIDHTFLHCQFALRGWSFLLQIFGYSSCMPQNVEGWMNEAMRGWPFKGKAKILWNCAARALFWNLWMERNNRIF

A0A5N5H648 Ribonuclease H protein

8.2e-32

38.89

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Query:  LAWDLGLRRGLFDREVGGWADIMSRLDTTQIGEG-ADKVGWFLDPSGAYTVKSGLKILFED--TPHLSPSVTSLLWKYSVPKKVKVLLWTLANRAVNTAD
        L+W+   RR L + E+   A ++ +++  ++ +  AD   W LD SG +T KS    L  +    H  PS  S +WK  VP KVKVL+W +A   +NT D
Subjt:  LAWDLGLRRGLFDREVGGWADIMSRLDTTQIGEG-ADKVGWFLDPSGAYTVKSGLKILFED--TPHLSPSVTSLLWKYSVPKKVKVLLWTLANRAVNTAD

Query:  RLQRRCPNWVISPSVCVLCKQNEESIDHTFLHCQFALRGWSFLLQIFGYSSCMPQNVEGWMNEAMRGWPFKGKAKILWNCAARALFWNLWMERNNRIF
        ++QRR P   ISP  C LCK  EES++H FLHC + ++ W  L Q    S  +P+     ++          KAK LW C   A+FWN+W+ERN RIF
Subjt:  RLQRRCPNWVISPSVCVLCKQNEESIDHTFLHCQFALRGWSFLLQIFGYSSCMPQNVEGWMNEAMRGWPFKGKAKILWNCAARALFWNLWMERNNRIF

A5BZG3 Reverse transcriptase domain-containing protein

4.8e-32

38.5

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Query:  NDEQLAWDLGLRRGLFDREVGGWADIMSRLDTTQIG-EGADKVGWFLDPSGAYTVKSGLKILFEDTPHLSPSVTSLLWKYSVPKKVKVLLWTLANRAVNT
        N   L+W+   RR L D E+     +MS L +  +    +D   W L  SG+++VKS    L +D+  L       LW   VP KVK L W +A+  VNT
Subjt:  NDEQLAWDLGLRRGLFDREVGGWADIMSRLDTTQIG-EGADKVGWFLDPSGAYTVKSGLKILFEDTPHLSPSVTSLLWKYSVPKKVKVLLWTLANRAVNT

Query:  ADRLQRRCPNWVISPSVCVLCKQNEESIDHTFLHCQFALRGWSFLLQIFGYSSCMPQNVEGWMNEAMRGWPFKGKAKILWNCAARALFWNLWMERNNRIF
         D+LQ R P   + P  C+LCK+N ESIDH FLHC   +  W  L  + G     P+++E  +  + RG     + KILW  A   L W +W ERNNRIF
Subjt:  ADRLQRRCPNWVISPSVCVLCKQNEESIDHTFLHCQFALRGWSFLLQIFGYSSCMPQNVEGWMNEAMRGWPFKGKAKILWNCAARALFWNLWMERNNRIF

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

5.0e-10

26.04

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Query:  DKVGWFLDPSGAYTVKSGLKILFED---TPHLSPSVTSLLWKYSVPKKVKVLLWTLANRAVNTADRLQRRCPNWVISPSVCVLCKQNEESIDHTFLHCQF
        D++ W     G ++V+S  ++L  D    P+++ S  + LWK  VP++VK  LW + N+AV T +   RR    + + +VC +CK   ES+ H    C  
Subjt:  DKVGWFLDPSGAYTVKSGLKILFED---TPHLSPSVTSLLWKYSVPKKVKVLLWTLANRAVNTADRLQRRCPNWVISPSVCVLCKQNEESIDHTFLHCQF

Query:  ALRGWSFLLQIFGYSSCMPQNVEGWMNEAMRGWPF------KGKAKILWNCAARALFWNLWMERNNRIF
         L  W  ++          +  +G+ ++++  W +       G   I W+     + W  W  R   IF
Subjt:  ALRGWSFLLQIFGYSSCMPQNVEGWMNEAMRGWPF------KGKAKILWNCAARALFWNLWMERNNRIF

Arabidopsis top hits

e value

%identity

Alignment

AT1G45063.1 copper ion binding;electron carriers

3.8e-05

25.77

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Query:  DPSGAYTV-KSGLKILFEDTPHLSPSVTSLLWKYSVPKKVKVLLWTLAN-RAVNTADRLQR-------RCPNWVIS-PSVCVLCKQNEESIDHTFLHCQF
        DP+    V K+G  I+    P +   ++S         K++V++ T  N   ++  +RL R       R  +W I  PS+C+LC   +E+  H F  C F
Subjt:  DPSGAYTV-KSGLKILFEDTPHLSPSVTSLLWKYSVPKKVKVLLWTLAN-RAVNTADRLQR-------RCPNWVIS-PSVCVLCKQNEESIDHTFLHCQF

Query:  ALRGWSFLLQIFGYS-SCMPQNVEGWMNEAMRGWPFKGKAKILWNCAARALFWNLWMERNNRI
        +   WSF       +   M ++   W+    R      K   +   A +A  +++W ERN R+
Subjt:  ALRGWSFLLQIFGYS-SCMPQNVEGWMNEAMRGWPFKGKAKILWNCAARALFWNLWMERNNRI

Sequences

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CDS sequence

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ATGTCTCTATGTTCAATGGAGATCGAGTCCCATGATTGTTGGAATGATGAGCAACTCGCCTGGGATCTTGGCCTAAGGAGGGGTCTTTTTGACAGAGAGGTAGGAGGATG
GGCAGATATTATGAGTAGATTAGATACTACTCAGATAGGAGAAGGTGCTGATAAAGTGGGCTGGTTTCTAGACCCCTCTGGTGCTTACACGGTGAAATCAGGCTTAAAAA
TTCTGTTTGAAGACACTCCACATTTGAGTCCGTCTGTTACCTCTCTTCTTTGGAAATACTCTGTCCCTAAGAAAGTAAAAGTCCTCCTTTGGACTCTAGCAAACAGGGCG
GTTAACACAGCAGACAGACTCCAGAGAAGATGTCCAAATTGGGTTATTTCCCCTTCTGTTTGTGTTCTTTGCAAACAGAACGAGGAATCCATAGATCACACATTCCTTCA
CTGTCAGTTTGCTCTCCGAGGGTGGTCTTTTCTTCTTCAAATCTTTGGATACTCCAGTTGCATGCCTCAGAATGTTGAAGGGTGGATGAATGAAGCTATGCGGGGTTGGC
CGTTCAAAGGAAAAGCCAAAATTTTGTGGAATTGTGCCGCTAGAGCCCTCTTTTGGAATCTTTGGATGGAAAGAAACAATAGAATTTTTTAG

mRNA sequence

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Protein sequence

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MSLCSMEIESHDCWNDEQLAWDLGLRRGLFDREVGGWADIMSRLDTTQIGEGADKVGWFLDPSGAYTVKSGLKILFEDTPHLSPSVTSLLWKYSVPKKVKVLLWTLANRA
VNTADRLQRRCPNWVISPSVCVLCKQNEESIDHTFLHCQFALRGWSFLLQIFGYSSCMPQNVEGWMNEAMRGWPFKGKAKILWNCAARALFWNLWMERNNRIF

Moc09g08060 (gene) of Bitter gourd (OHB3-1) v2 genome