CuGenDBv2

Gene ID	Moc09g08070
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	LINE-1 retrotransposable element ORF2 protein
Genome location	chr9:6417161..6420260
RNA-Seq Expression	Moc09g08070
Synteny	Moc09g08070
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0037436.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

5.5e-29

35.16

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Query:  KLFRDFLWEGSSNNGKPHLVNWKQVQLPLKEGGLGVGNIKHKNTALLSKWIWQFISEKHHLWRTLIAVKYMRTSSNTW--TFSSNTRHKGPWSSILNHSH
        K +R+FLW+  +     +L  W  +  P  +GGLG+ N+K  NTALL KW+W+F  EK  LW  +I+ KY       +  T    +  K PW  I+    
Subjt:  KLFRDFLWEGSSNNGKPHLVNWKQVQLPLKEGGLGVGNIKHKNTALLSKWIWQFISEKHHLWRTLIAVKYMRTSSNTW--TFSSNTRHKGPWSSILNHSH

Query:  LIKDFALCKVGENSHCLFWKDRWLPQGTLNNLYPRLYTITTNKDARIIDLWSKTSSSWDYSFRRPLKDDEIDGWLILSQILK
          ++ +  ++ +  +  FW   W+  G+L+N YPRLYT++  ++A I +LW   ++ W+   RRPL D EI+ W  L  ILK
Subjt:  LIKDFALCKVGENSHCLFWKDRWLPQGTLNNLYPRLYTITTNKDARIIDLWSKTSSSWDYSFRRPLKDDEIDGWLILSQILK

KAA0058554.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

1.4e-29

35.71

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Query:  PRKAEDQICKLFRDFLWEGSSNNGKPHLVNWKQVQLPLKEGGLGVGNIKHKNTALLSKWIWQFISEKHHLWRTLIAVKYM-RTSSNTWTFSSNTRHKGPW
        P      I K +R+FLW+GS      HL+NW +V  P +EGGLG+  ++  N ALLSK +W++ SE + LWR LI +KY  +   +  +  S++  K PW
Subjt:  PRKAEDQICKLFRDFLWEGSSNNGKPHLVNWKQVQLPLKEGGLGVGNIKHKNTALLSKWIWQFISEKHHLWRTLIAVKYM-RTSSNTWTFSSNTRHKGPW

Query:  SSILNHSHLIKDFALCKVGENSHCLFWKDRWLPQGTLNNLYPRLYTITTNKDARIIDLWSKTSSSWDYSFRRPLKDDEIDGW
         SI+N+    K      +       FW   W  +G L+  YPRL+ ++ +K++ I D+W+  ++ W+ +FRR L D E+  W
Subjt:  SSILNHSHLIKDFALCKVGENSHCLFWKDRWLPQGTLNNLYPRLYTITTNKDARIIDLWSKTSSSWDYSFRRPLKDDEIDGW

TYK00493.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

1.8e-32

37.36

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Query:  PRKAEDQICKLFRDFLWEGSSNNGKPHLVNWKQVQLPLKEGGLGVGNIKHKNTALLSKWIWQFISEKHHLWRTLIAVKYM-RTSSNTWTFSSNTRHKGPW
        P      I KL+R+FLW+GS      HL+NW  V  P +EGGLG+  ++  N ALLSKW+W++ SE + LWR LI +KY  +   +  +  S++  K PW
Subjt:  PRKAEDQICKLFRDFLWEGSSNNGKPHLVNWKQVQLPLKEGGLGVGNIKHKNTALLSKWIWQFISEKHHLWRTLIAVKYM-RTSSNTWTFSSNTRHKGPW

Query:  SSILNHSHLIKDFALCKVGENSHCLFWKDRWLPQGTLNNLYPRLYTITTNKDARIIDLWSKTSSSWDYSFRRPLKDDEIDGW
         SI+N+    K      +       FW   W P+G L+  YPRL+ ++ +K++ I D+W+  ++ W+ +FRR L D E+  W
Subjt:  SSILNHSHLIKDFALCKVGENSHCLFWKDRWLPQGTLNNLYPRLYTITTNKDARIIDLWSKTSSSWDYSFRRPLKDDEIDGW

TYK05690.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

5.8e-31

38.15

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Query:  KLFRDFLWEGSSNNGKPHLVNWKQVQLPLKEGGLGVGNIKHKNTALLSKWIWQFISEKHHLWRTLIAVKYM-RTSSNTWTFSSNTRHKGPWSSILNHSHL
        KL+R+FLW+GS  +   HL+NW  V  P +EGGLG+  ++  N ALLSKW+W++ SE + LWR LI +KY  +   +  +  S++  K PW SI+N+   
Subjt:  KLFRDFLWEGSSNNGKPHLVNWKQVQLPLKEGGLGVGNIKHKNTALLSKWIWQFISEKHHLWRTLIAVKYM-RTSSNTWTFSSNTRHKGPWSSILNHSHL

Query:  IKDFALCKVGENSHCLFWKDRWLPQGTLNNLYPRLYTITTNKDARIIDLWSKTSSSWDYSFRRPLKDDEIDGW
         K      +       FW   W P+G L   Y RL+ ++ +K++ I D+W+  ++ W+ +FRR L D EI  W
Subjt:  IKDFALCKVGENSHCLFWKDRWLPQGTLNNLYPRLYTITTNKDARIIDLWSKTSSSWDYSFRRPLKDDEIDGW

TYK05808.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

1.3e-30

36.81

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Query:  PRKAEDQICKLFRDFLWEGSSNNGKPHLVNWKQVQLPLKEGGLGVGNIKHKNTALLSKWIWQFISEKHHLWRTLIAVKYM-RTSSNTWTFSSNTRHKGPW
        P      I KL+R+FLW+GS      HL+NW  V    +EGGLG+  ++  N ALLSKW+W++ SE + LWR LI +KY  +   +  +  S++  K PW
Subjt:  PRKAEDQICKLFRDFLWEGSSNNGKPHLVNWKQVQLPLKEGGLGVGNIKHKNTALLSKWIWQFISEKHHLWRTLIAVKYM-RTSSNTWTFSSNTRHKGPW

Query:  SSILNHSHLIKDFALCKVGENSHCLFWKDRWLPQGTLNNLYPRLYTITTNKDARIIDLWSKTSSSWDYSFRRPLKDDEIDGW
         SI+N+    K      +       FW   W P+G L+  YPRL+ ++ +K + I D+W+  ++ W+ +FRR L D E+  W
Subjt:  SSILNHSHLIKDFALCKVGENSHCLFWKDRWLPQGTLNNLYPRLYTITTNKDARIIDLWSKTSSSWDYSFRRPLKDDEIDGW

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T5L3 LINE-1 retrotransposable element ORF2 protein

2.6e-29

35.16

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Query:  KLFRDFLWEGSSNNGKPHLVNWKQVQLPLKEGGLGVGNIKHKNTALLSKWIWQFISEKHHLWRTLIAVKYMRTSSNTW--TFSSNTRHKGPWSSILNHSH
        K +R+FLW+  +     +L  W  +  P  +GGLG+ N+K  NTALL KW+W+F  EK  LW  +I+ KY       +  T    +  K PW  I+    
Subjt:  KLFRDFLWEGSSNNGKPHLVNWKQVQLPLKEGGLGVGNIKHKNTALLSKWIWQFISEKHHLWRTLIAVKYMRTSSNTW--TFSSNTRHKGPWSSILNHSH

Query:  LIKDFALCKVGENSHCLFWKDRWLPQGTLNNLYPRLYTITTNKDARIIDLWSKTSSSWDYSFRRPLKDDEIDGWLILSQILK
          ++ +  ++ +  +  FW   W+  G+L+N YPRLYT++  ++A I +LW   ++ W+   RRPL D EI+ W  L  ILK
Subjt:  LIKDFALCKVGENSHCLFWKDRWLPQGTLNNLYPRLYTITTNKDARIIDLWSKTSSSWDYSFRRPLKDDEIDGWLILSQILK

A0A5A7UTS4 LINE-1 retrotransposable element ORF2 protein

7.0e-30

35.71

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Query:  PRKAEDQICKLFRDFLWEGSSNNGKPHLVNWKQVQLPLKEGGLGVGNIKHKNTALLSKWIWQFISEKHHLWRTLIAVKYM-RTSSNTWTFSSNTRHKGPW
        P      I K +R+FLW+GS      HL+NW +V  P +EGGLG+  ++  N ALLSK +W++ SE + LWR LI +KY  +   +  +  S++  K PW
Subjt:  PRKAEDQICKLFRDFLWEGSSNNGKPHLVNWKQVQLPLKEGGLGVGNIKHKNTALLSKWIWQFISEKHHLWRTLIAVKYM-RTSSNTWTFSSNTRHKGPW

Query:  SSILNHSHLIKDFALCKVGENSHCLFWKDRWLPQGTLNNLYPRLYTITTNKDARIIDLWSKTSSSWDYSFRRPLKDDEIDGW
         SI+N+    K      +       FW   W  +G L+  YPRL+ ++ +K++ I D+W+  ++ W+ +FRR L D E+  W
Subjt:  SSILNHSHLIKDFALCKVGENSHCLFWKDRWLPQGTLNNLYPRLYTITTNKDARIIDLWSKTSSSWDYSFRRPLKDDEIDGW

A0A5D3BL61 LINE-1 retrotransposable element ORF2 protein

8.8e-33

37.36

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Query:  PRKAEDQICKLFRDFLWEGSSNNGKPHLVNWKQVQLPLKEGGLGVGNIKHKNTALLSKWIWQFISEKHHLWRTLIAVKYM-RTSSNTWTFSSNTRHKGPW
        P      I KL+R+FLW+GS      HL+NW  V  P +EGGLG+  ++  N ALLSKW+W++ SE + LWR LI +KY  +   +  +  S++  K PW
Subjt:  PRKAEDQICKLFRDFLWEGSSNNGKPHLVNWKQVQLPLKEGGLGVGNIKHKNTALLSKWIWQFISEKHHLWRTLIAVKYM-RTSSNTWTFSSNTRHKGPW

Query:  SSILNHSHLIKDFALCKVGENSHCLFWKDRWLPQGTLNNLYPRLYTITTNKDARIIDLWSKTSSSWDYSFRRPLKDDEIDGW
         SI+N+    K      +       FW   W P+G L+  YPRL+ ++ +K++ I D+W+  ++ W+ +FRR L D E+  W
Subjt:  SSILNHSHLIKDFALCKVGENSHCLFWKDRWLPQGTLNNLYPRLYTITTNKDARIIDLWSKTSSSWDYSFRRPLKDDEIDGW

A0A5D3C2W8 LINE-1 retrotransposable element ORF2 protein

2.8e-31

38.15

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Query:  KLFRDFLWEGSSNNGKPHLVNWKQVQLPLKEGGLGVGNIKHKNTALLSKWIWQFISEKHHLWRTLIAVKYM-RTSSNTWTFSSNTRHKGPWSSILNHSHL
        KL+R+FLW+GS  +   HL+NW  V  P +EGGLG+  ++  N ALLSKW+W++ SE + LWR LI +KY  +   +  +  S++  K PW SI+N+   
Subjt:  KLFRDFLWEGSSNNGKPHLVNWKQVQLPLKEGGLGVGNIKHKNTALLSKWIWQFISEKHHLWRTLIAVKYM-RTSSNTWTFSSNTRHKGPWSSILNHSHL

Query:  IKDFALCKVGENSHCLFWKDRWLPQGTLNNLYPRLYTITTNKDARIIDLWSKTSSSWDYSFRRPLKDDEIDGW
         K      +       FW   W P+G L   Y RL+ ++ +K++ I D+W+  ++ W+ +FRR L D EI  W
Subjt:  IKDFALCKVGENSHCLFWKDRWLPQGTLNNLYPRLYTITTNKDARIIDLWSKTSSSWDYSFRRPLKDDEIDGW

A0A5D3C3M3 LINE-1 retrotransposable element ORF2 protein

6.3e-31

36.81

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Query:  PRKAEDQICKLFRDFLWEGSSNNGKPHLVNWKQVQLPLKEGGLGVGNIKHKNTALLSKWIWQFISEKHHLWRTLIAVKYM-RTSSNTWTFSSNTRHKGPW
        P      I KL+R+FLW+GS      HL+NW  V    +EGGLG+  ++  N ALLSKW+W++ SE + LWR LI +KY  +   +  +  S++  K PW
Subjt:  PRKAEDQICKLFRDFLWEGSSNNGKPHLVNWKQVQLPLKEGGLGVGNIKHKNTALLSKWIWQFISEKHHLWRTLIAVKYM-RTSSNTWTFSSNTRHKGPW

Query:  SSILNHSHLIKDFALCKVGENSHCLFWKDRWLPQGTLNNLYPRLYTITTNKDARIIDLWSKTSSSWDYSFRRPLKDDEIDGW
         SI+N+    K      +       FW   W P+G L+  YPRL+ ++ +K + I D+W+  ++ W+ +FRR L D E+  W
Subjt:  SSILNHSHLIKDFALCKVGENSHCLFWKDRWLPQGTLNNLYPRLYTITTNKDARIIDLWSKTSSSWDYSFRRPLKDDEIDGW

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

1.4e-14

34.53

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Query:  LPRKAEDQICKLFRDFLWEGSSNNGKPHLVNWKQVQLPLKEGGLGVGNIKHKNTALLSKWIWQFISEKHHLWRTLIAVKYM--RTSSNTWTFSSNTRHKG
        LP+   +++ +L R FLW  ++   K HLV W +V  P KEGGLGV   K  N AL+SK  W+ + EK+ LW  ++  KY       + W        KG
Subjt:  LPRKAEDQICKLFRDFLWEGSSNNGKPHLVNWKQVQLPLKEGGLGVGNIKHKNTALLSKWIWQFISEKHHLWRTLIAVKYM--RTSSNTWTFSSNTRHKG

Query:  PWSSILNHSHL-IKDFALCKV----GENSHCLFWKDRWL
         WSS      + ++D     V    G+     FW DRW+
Subjt:  PWSSILNHSHL-IKDFALCKV----GENSHCLFWKDRWL

P93295 Uncharacterized mitochondrial protein AtMg00310

1.6e-07

30.08

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Query:  DFLWEGSSNNGKPHLVNWKQV-QLPLKEGGLGVGNIKHKNTALLSKWIWQFISEKHHLWRTLIAVKYMRTSSNTWTFSSNTRHKGPWSSILNHSHLIKDF
        +F W    N  K   V W+++ +    +GGLG  ++   N ALL+K  ++ I + H L   L+  +Y   SS     S  TR    W SI++   L+   
Subjt:  DFLWEGSSNNGKPHLVNWKQV-QLPLKEGGLGVGNIKHKNTALLSKWIWQFISEKHHLWRTLIAVKYMRTSSNTWTFSSNTRHKGPWSSILNHSHLIKDF

Query:  ALCKVGENSHCLFWKDRWLPQGT
         L  +G+  H   W DRW+   T
Subjt:  ALCKVGENSHCLFWKDRWLPQGT

Arabidopsis top hits

e value

%identity

Alignment

AT4G29090.1 Ribonuclease H-like superfamily protein

1.4e-09

25.76

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Query:  LPRKAEDQICKLFRDFLWEGSSNNGKPHLVNWKQVQLPLKEGGLGVGNIKHKNTALLSKWIWQFISEKHHLWRTLIAVKYMRTSSNTWTFSSNTRHKGPW
        LP+    QI  +  DF W         H   W  +     EGG+G  +I+  N ALL K +W+ +S    L   +   +Y    S+       +R    W
Subjt:  LPRKAEDQICKLFRDFLWEGSSNNGKPHLVNWKQVQLPLKEGGLGVGNIKHKNTALLSKWIWQFISEKHHLWRTLIAVKYMRTSSNTWTFSSNTRHKGPW

Query:  SSILNHSHLIKDFALCKVGENSHCLFWKDRWL
         SI     +++  A   VG     + W+ +WL
Subjt:  SSILNHSHLIKDFALCKVGENSHCLFWKDRWL

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

1.1e-08

30.08

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Query:  DFLWEGSSNNGKPHLVNWKQV-QLPLKEGGLGVGNIKHKNTALLSKWIWQFISEKHHLWRTLIAVKYMRTSSNTWTFSSNTRHKGPWSSILNHSHLIKDF
        +F W    N  K   V W+++ +    +GGLG  ++   N ALL+K  ++ I + H L   L+  +Y   SS     S  TR    W SI++   L+   
Subjt:  DFLWEGSSNNGKPHLVNWKQV-QLPLKEGGLGVGNIKHKNTALLSKWIWQFISEKHHLWRTLIAVKYMRTSSNTWTFSSNTRHKGPWSSILNHSHLIKDF

Query:  ALCKVGENSHCLFWKDRWLPQGT
         L  +G+  H   W DRW+   T
Subjt:  ALCKVGENSHCLFWKDRWLPQGT

Sequences

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CDS sequence

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ATGGCCTTGCACATACTTGGGTCTCCCTTTGAATGTTTACCAAGGAAAGCCGAAGATCAGATCTGCAAGCTTTTTCGGGACTTCTTATGGGAAGGCTCATCCAACAATGG
TAAGCCCCATCTTGTTAACTGGAAGCAAGTTCAATTGCCCTTAAAAGAGGGTGGTTTGGGAGTGGGTAACATCAAGCATAAGAATACTGCTCTCCTCTCCAAGTGGATTT
GGCAGTTTATCAGTGAAAAACATCATCTATGGAGGACACTAATAGCAGTTAAATACATGAGAACTTCATCTAATACCTGGACCTTCTCTAGTAATACTAGACACAAAGGT
CCTTGGTCTTCTATCCTTAATCATTCACATCTCATAAAAGACTTTGCTCTATGCAAGGTAGGGGAAAACAGCCACTGCTTATTTTGGAAGGATAGATGGCTTCCTCAAGG
GACACTCAACAATCTCTACCCGAGACTCTACACTATCACCACTAATAAGGATGCTAGAATCATCGATCTTTGGTCTAAGACTTCCTCTTCTTGGGATTACAGCTTCCGCA
GACCACTAAAAGATGATGAAATCGATGGTTGGTTGATACTTTCACAGATCCTTAAAGCTTTTTCCCCCTTCTCCACGAGAAGATTTGTGGACTTGGACACTGGAACTGAG
CAAGTCATTCACCACCAGCTCTGTTTTCAAGCATCTGACCACTTGCAAAGGCACGCCCGCCCTCTACCCATCCCTTTGGCAAGGAATGAACTCAACAAGATTTTGATGAA
GATAGGCTGCTTGAATGGCGAGGTCCGGGATCCTCGTACTGGTATTAGCGCTGTTCTTGGTGCTGGTTACCAACACAGAGAGTCAATGGCAGCCGCCAGAGGTGCCAGAG
GTTGCTCCCCCTCCGCTCTGCGCCTCCCAGATAGCGCTAGTAAACTATGCCTGCGGAATGCTGCCTTACACCCCAGTGCTGCCAACTCCGCCTTCACCACCATCACTCTT
TGA

mRNA sequence

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Protein sequence

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MALHILGSPFECLPRKAEDQICKLFRDFLWEGSSNNGKPHLVNWKQVQLPLKEGGLGVGNIKHKNTALLSKWIWQFISEKHHLWRTLIAVKYMRTSSNTWTFSSNTRHKG
PWSSILNHSHLIKDFALCKVGENSHCLFWKDRWLPQGTLNNLYPRLYTITTNKDARIIDLWSKTSSSWDYSFRRPLKDDEIDGWLILSQILKAFSPFSTRRFVDLDTGTE
QVIHHQLCFQASDHLQRHARPLPIPLARNELNKILMKIGCLNGEVRDPRTGISAVLGAGYQHRESMAAARGARGCSPSALRLPDSASKLCLRNAALHPSAANSAFTTITL

Moc09g08070 (gene) of Bitter gourd (OHB3-1) v2 genome