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Moc09g08110 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g08110
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr9:6466157..6467062
RNA-Seq ExpressionMoc09g08110
SyntenyMoc09g08110
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EOX99224.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Theobroma cacao]2.8e-1963.24Show/hide
Query:  LKGNLLAPVPVEPLRPPYPKWYDPQVRCDYHAGVVGHSTENCTSLKHKVQVLMKVGWLKFSKEDGSHM
        ++  LLA  P+EPLRPP+PKWYDP   CDYH G+ GHSTENCT+LKHKVQ L+K G L F+K+D S++
Subjt:  LKGNLLAPVPVEPLRPPYPKWYDPQVRCDYHAGVVGHSTENCTSLKHKVQVLMKVGWLKFSKEDGSHM

XP_017976382.1 PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC18598048 [Theobroma cacao]2.8e-1965.15Show/hide
Query:  LKGNLLAPVPVEPLRPPYPKWYDPQVRCDYHAGVVGHSTENCTSLKHKVQVLMKVGWLKFSKEDGS
        ++  LLA  P+EPLRPP+PKWYDP   CDYH G+ GHSTENCT++KHKVQVL+K G L F+K+D S
Subjt:  LKGNLLAPVPVEPLRPPYPKWYDPQVRCDYHAGVVGHSTENCTSLKHKVQVLMKVGWLKFSKEDGS

XP_022143515.1 uncharacterized protein LOC111013388 [Momordica charantia]1.9e-2079.49Show/hide
Query:  MEELNIELKKIRDEIQEQVMEVHNVELKKMRQDIDNIQEQIMKILNVLKNIVTVGDTSQPNNLVEPRNNSSPRVDPPL
        +EELN ELK+IRDEIQE V EVHNVELKKMRQDID IQ Q+  ILNVLK IVTVGD SQPNNLVEP NNSS RV P L
Subjt:  MEELNIELKKIRDEIQEQVMEVHNVELKKMRQDIDNIQEQIMKILNVLKNIVTVGDTSQPNNLVEPRNNSSPRVDPPL

XP_022153553.1 uncharacterized protein LOC111021029 [Momordica charantia]5.8e-4177.17Show/hide
Query:  MEELNIELKKIRDEIQEQVMEVHNVELKKMRQDIDNIQEQIMKILNVLKNIVTVGDTSQPNNLVEPRNNSSPRVDPPLCQSTDGFPQHSSSHDA------
        +EELNIELKKIRDEIQEQVMEV NVELKKMRQDIDNIQ+Q+MKILNVLKNIVTVG TSQPNNLVEP NNSSPRVDPPLCQS +GFPQHSSSHDA      
Subjt:  MEELNIELKKIRDEIQEQVMEVHNVELKKMRQDIDNIQEQIMKILNVLKNIVTVGDTSQPNNLVEPRNNSSPRVDPPLCQSTDGFPQHSSSHDA------

Query:  -------QVEFAFQDAQTSKANLKGNL
               QVEF F+D QT K N   NL
Subjt:  -------QVEFAFQDAQTSKANLKGNL

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]8.7e-2167.19Show/hide
Query:  KGNLLAPVPVEPLRPPYPKWYDPQVRCDYHAGVVGHSTENCTSLKHKVQVLMKVGWLKFSKEDG
        + N LAPVPV+P++PPYP+WYD   RCDYHAG +GHSTENCT+LK++VQ L+K GWL F KE+G
Subjt:  KGNLLAPVPVEPLRPPYPKWYDPQVRCDYHAGVVGHSTENCTSLKHKVQVLMKVGWLKFSKEDG

TrEMBL top hitse value%identityAlignment
A0A061E2I6 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein1.3e-1963.24Show/hide
Query:  LKGNLLAPVPVEPLRPPYPKWYDPQVRCDYHAGVVGHSTENCTSLKHKVQVLMKVGWLKFSKEDGSHM
        ++  LLA  P+EPLRPP+PKWYDP   CDYH G+ GHSTENCT+LKHKVQ L+K G L F+K+D S++
Subjt:  LKGNLLAPVPVEPLRPPYPKWYDPQVRCDYHAGVVGHSTENCTSLKHKVQVLMKVGWLKFSKEDGSHM

A0A061FBD9 Uncharacterized protein1.3e-1963.24Show/hide
Query:  LKGNLLAPVPVEPLRPPYPKWYDPQVRCDYHAGVVGHSTENCTSLKHKVQVLMKVGWLKFSKEDGSHM
        ++  LLA  P+EPLRPP+PKWYDP   CDYH G+ GHSTENCT+LKHKVQ L+K G L F+K+D S++
Subjt:  LKGNLLAPVPVEPLRPPYPKWYDPQVRCDYHAGVVGHSTENCTSLKHKVQVLMKVGWLKFSKEDGSHM

A0A6J1CP05 uncharacterized protein LOC1110133889.3e-2179.49Show/hide
Query:  MEELNIELKKIRDEIQEQVMEVHNVELKKMRQDIDNIQEQIMKILNVLKNIVTVGDTSQPNNLVEPRNNSSPRVDPPL
        +EELN ELK+IRDEIQE V EVHNVELKKMRQDID IQ Q+  ILNVLK IVTVGD SQPNNLVEP NNSS RV P L
Subjt:  MEELNIELKKIRDEIQEQVMEVHNVELKKMRQDIDNIQEQIMKILNVLKNIVTVGDTSQPNNLVEPRNNSSPRVDPPL

A0A6J1DHS7 uncharacterized protein LOC1110210292.8e-4177.17Show/hide
Query:  MEELNIELKKIRDEIQEQVMEVHNVELKKMRQDIDNIQEQIMKILNVLKNIVTVGDTSQPNNLVEPRNNSSPRVDPPLCQSTDGFPQHSSSHDA------
        +EELNIELKKIRDEIQEQVMEV NVELKKMRQDIDNIQ+Q+MKILNVLKNIVTVG TSQPNNLVEP NNSSPRVDPPLCQS +GFPQHSSSHDA      
Subjt:  MEELNIELKKIRDEIQEQVMEVHNVELKKMRQDIDNIQEQIMKILNVLKNIVTVGDTSQPNNLVEPRNNSSPRVDPPLCQSTDGFPQHSSSHDA------

Query:  -------QVEFAFQDAQTSKANLKGNL
               QVEF F+D QT K N   NL
Subjt:  -------QVEFAFQDAQTSKANLKGNL

A0A6J1E2J7 Ribonuclease H4.2e-2167.19Show/hide
Query:  KGNLLAPVPVEPLRPPYPKWYDPQVRCDYHAGVVGHSTENCTSLKHKVQVLMKVGWLKFSKEDG
        + N LAPVPV+P++PPYP+WYD   RCDYHAG +GHSTENCT+LK++VQ L+K GWL F KE+G
Subjt:  KGNLLAPVPVEPLRPPYPKWYDPQVRCDYHAGVVGHSTENCTSLKHKVQVLMKVGWLKFSKEDG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAATTGAATATTGAACTAAAGAAAATAAGAGACGAGATTCAAGAACAAGTCATGGAGGTGCATAATGTAGAGCTAAAGAAGATGAGACAAGACATCGATAATAT
TCAAGAGCAAATCATGAAAATTTTAAATGTCTTAAAGAATATTGTTACAGTTGGGGATACTTCTCAACCTAACAATTTAGTCGAACCTCGTAATAATTCATCACCTAGGG
TCGACCCACCTCTTTGTCAATCAACAGATGGATTCCCCCAACACAGTTCGTCACATGACGCTCAGGTTGAGTTTGCATTCCAAGATGCTCAAACATCAAAGGCTAATTTA
AAAGGTAATCTATTAGCTCCCGTACCCGTAGAGCCATTACGACCACCTTATCCAAAGTGGTACGACCCGCAAGTCCGTTGTGATTACCATGCAGGAGTTGTAGGTCATTC
AACTGAAAACTGTACTTCACTAAAGCATAAAGTGCAGGTTCTAATGAAGGTGGGATGGCTAAAGTTTTCAAAGGAAGATGGTTCACACATGAAGCATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAATTGAATATTGAACTAAAGAAAATAAGAGACGAGATTCAAGAACAAGTCATGGAGGTGCATAATGTAGAGCTAAAGAAGATGAGACAAGACATCGATAATAT
TCAAGAGCAAATCATGAAAATTTTAAATGTCTTAAAGAATATTGTTACAGTTGGGGATACTTCTCAACCTAACAATTTAGTCGAACCTCGTAATAATTCATCACCTAGGG
TCGACCCACCTCTTTGTCAATCAACAGATGGATTCCCCCAACACAGTTCGTCACATGACGCTCAGGTTGAGTTTGCATTCCAAGATGCTCAAACATCAAAGGCTAATTTA
AAAGGTAATCTATTAGCTCCCGTACCCGTAGAGCCATTACGACCACCTTATCCAAAGTGGTACGACCCGCAAGTCCGTTGTGATTACCATGCAGGAGTTGTAGGTCATTC
AACTGAAAACTGTACTTCACTAAAGCATAAAGTGCAGGTTCTAATGAAGGTGGGATGGCTAAAGTTTTCAAAGGAAGATGGTTCACACATGAAGCATTAG
Protein sequenceShow/hide protein sequence
MEELNIELKKIRDEIQEQVMEVHNVELKKMRQDIDNIQEQIMKILNVLKNIVTVGDTSQPNNLVEPRNNSSPRVDPPLCQSTDGFPQHSSSHDAQVEFAFQDAQTSKANL
KGNLLAPVPVEPLRPPYPKWYDPQVRCDYHAGVVGHSTENCTSLKHKVQVLMKVGWLKFSKEDGSHMKH