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Moc09g08970 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g08970
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionPSII 6.1 kDa protein
Genome locationchr9:7387259..7388271
RNA-Seq ExpressionMoc09g08970
SyntenyMoc09g08970
Gene Ontology termsGO:0042549 - photosystem II stabilization (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009806 - Photosystem II PsbW, class 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575946.1 Photosystem II reaction center W protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]3.5e-4681.16Show/hide
Query:  MAAVTSAAAA-VRTAPVHSRPRTAASSAPFLLGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAA VR++ V +RP  AAS APFLLGLPALGKKGGVRCSM EGKA+ + ENK S+LGMGASL+AA  A +MSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAA-VRTAPVHSRPRTAASSAPFLLGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL
        LSNNLL WILLGVFG IW+FYI+YTS+LEEDEESGLSL
Subjt:  LSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL

XP_008451280.1 PREDICTED: photosystem II reaction center W protein, chloroplastic-like [Cucumis melo]4.5e-4683.45Show/hide
Query:  MAAVTS-AAAAVRTAPVHSRPR-TAASSAPFLLGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERLSTEGTGLPF
        MAAVTS AAAAVRT+ V +RP   +AS APFLLGLPALGKKGGVRCSM EGK + E ENK S+LGMGASLIAA  A TMSSPAMALVDERLSTEGTGLPF
Subjt:  MAAVTS-AAAAVRTAPVHSRPR-TAASSAPFLLGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL
        GLSNNLL WILLGVFGLIW+FYIVYTS+LEEDEESGLSL
Subjt:  GLSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL

XP_022155800.1 photosystem II reaction center W protein, chloroplastic [Momordica charantia]4.1e-63100Show/hide
Query:  MAAVTSAAAAVRTAPVHSRPRTAASSAPFLLGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAVATTMSSPAMALVDERLSTEGTGLPFGLS
        MAAVTSAAAAVRTAPVHSRPRTAASSAPFLLGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAVATTMSSPAMALVDERLSTEGTGLPFGLS
Subjt:  MAAVTSAAAAVRTAPVHSRPRTAASSAPFLLGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAVATTMSSPAMALVDERLSTEGTGLPFGLS

Query:  NNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL
        NNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL
Subjt:  NNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL

XP_022954252.1 photosystem II reaction center W protein, chloroplastic [Cucurbita moschata]7.7e-4680.43Show/hide
Query:  MAAVTSAAAA-VRTAPVHSRPRTAASSAPFLLGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAA VR++ V +RP  AAS +PFLLGLPALGKKGGVRCSM EGKA+ + ENK S+LGMGASL+AA  A +MSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAA-VRTAPVHSRPRTAASSAPFLLGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL
        LSNNLL WILLGVFG IW+FYI+YTS+LEEDEESGLSL
Subjt:  LSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL

XP_038900227.1 photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]2.7e-4682.61Show/hide
Query:  MAAVTSAA-AAVRTAPVHSRPRTAASSAPFLLGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAA A  RT+ V +RP  AAS APFLLGLPALGKKGGVRCSM EGK + E ENK S+LGMGASLIAA  A TMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAA-AAVRTAPVHSRPRTAASSAPFLLGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL
        LSNNLL WIL GVFGLIW+FYIVYTS+LEEDEESGLSL
Subjt:  LSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL

TrEMBL top hitse value%identityAlignment
A0A0A0K4V6 PSII 6.1 kDa protein8.3e-4682.61Show/hide
Query:  MAAVTSAAAA-VRTAPVHSRPRTAASSAPFLLGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAA VRT+ V +R   +AS APFLLGLPALGKKGGVRCSM EGK + E ENK S+LGMGASLIAA  A TMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAA-VRTAPVHSRPRTAASSAPFLLGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL
        LSNNLL WILLGVF LIW+FYIVYTS+LEEDEESGLSL
Subjt:  LSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL

A0A1S3BQI5 PSII 6.1 kDa protein2.2e-4683.45Show/hide
Query:  MAAVTS-AAAAVRTAPVHSRPR-TAASSAPFLLGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERLSTEGTGLPF
        MAAVTS AAAAVRT+ V +RP   +AS APFLLGLPALGKKGGVRCSM EGK + E ENK S+LGMGASLIAA  A TMSSPAMALVDERLSTEGTGLPF
Subjt:  MAAVTS-AAAAVRTAPVHSRPR-TAASSAPFLLGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL
        GLSNNLL WILLGVFGLIW+FYIVYTS+LEEDEESGLSL
Subjt:  GLSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL

A0A6J1DNF4 PSII 6.1 kDa protein2.0e-63100Show/hide
Query:  MAAVTSAAAAVRTAPVHSRPRTAASSAPFLLGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAVATTMSSPAMALVDERLSTEGTGLPFGLS
        MAAVTSAAAAVRTAPVHSRPRTAASSAPFLLGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAVATTMSSPAMALVDERLSTEGTGLPFGLS
Subjt:  MAAVTSAAAAVRTAPVHSRPRTAASSAPFLLGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAVATTMSSPAMALVDERLSTEGTGLPFGLS

Query:  NNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL
        NNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL
Subjt:  NNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL

A0A6J1GQI7 PSII 6.1 kDa protein3.7e-4680.43Show/hide
Query:  MAAVTSAAAA-VRTAPVHSRPRTAASSAPFLLGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAA VR++ V +RP  AAS +PFLLGLPALGKKGGVRCSM EGKA+ + ENK S+LGMGASL+AA  A +MSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAA-VRTAPVHSRPRTAASSAPFLLGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL
        LSNNLL WILLGVFG IW+FYI+YTS+LEEDEESGLSL
Subjt:  LSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL

A0A6J1JTT6 PSII 6.1 kDa protein4.9e-4681.16Show/hide
Query:  MAAVTSAAAA-VRTAPVHSRPRTAASSAPFLLGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAA VR++ V +RPR AAS APFLLGLPAL KKG VRCSM EGKA+ E ENK S+LGMGASL+AA  A +MSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAA-VRTAPVHSRPRTAASSAPFLLGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAV-ATTMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL
        LSNNLL WILLGVFG IW+FYI+YTS+LEEDEESGLSL
Subjt:  LSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL

SwissProt top hitse value%identityAlignment
Q39194 Photosystem II reaction center W protein, chloroplastic1.7e-3262.32Show/hide
Query:  MAAVTSAAAAVRTA-PVHSRPRTAASSAPFLLGLPALG-KKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAVATTMSSPAMALVDERLSTEGTGLPFG
        MA+ T++A+ V  A P      T A SAP +LGLP +G KKGGVRCSME    +K+        G+ A+  AA+   MS+PAMALVDER+STEGTGLPFG
Subjt:  MAAVTSAAAAVRTA-PVHSRPRTAASSAPFLLGLPALG-KKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAVATTMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL
        LSNNLL WIL GVFGLIW+F+ VYTSSLEEDEESGLSL
Subjt:  LSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL

Q41387 Photosystem II reaction center W protein, chloroplastic4.7e-3059.12Show/hide
Query:  MAAVTSAAAAVRTAPVHSRPRTAASSAPFLLGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLI-AAVATTMSSPAMALVDERLSTEGTGLPFGL
        + A +SA+   R + VH+  R   SS+P +LGLP++ K+  V CS+ E K S       ++  MGASL+ AA A T+S+PAMALVDER+STEGTGLPFGL
Subjt:  MAAVTSAAAAVRTAPVHSRPRTAASSAPFLLGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLI-AAVATTMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL
        SNNLL WIL GVFGLIW+ Y VY S LEEDEESGLSL
Subjt:  SNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL

Q5ZBY9 Photosystem II reaction center W protein, chloroplastic4.7e-2255.15Show/hide
Query:  MAAVTSAAAAVRTAPVHSRPRTAASSAPFLLGLPALGKKGG--VRCSMEEGKASKEAENKCSSL-GMGASLIAAVATTMSSPAMALVDERLSTEGTGLPF
        MA V++AAA    A        A  + P  LGLP +  +    VRC+      SKEA    +++ G GASL+A  AT  ++PAMALVDER+STEGTGL  
Subjt:  MAAVTSAAAAVRTAPVHSRPRTAASSAPFLLGLPALGKKGG--VRCSMEEGKASKEAENKCSSL-GMGASLIAAVATTMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESG
        GLSNNLL WILLGVFGLIWS Y +YTS LEEDEESG
Subjt:  GLSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESG

Q9SPI9 Photosystem II reaction center W protein, chloroplastic1.2e-0945.21Show/hide
Query:  ASLIAAVATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLE--EDEESGLSL
        A L    AT  + PA ALVDER++ +GTG PFG+++ +L W+LLGVFG +W+ + +    L   ED + GL L
Subjt:  ASLIAAVATTMSSPAMALVDERLSTEGTGLPFGLSNNLLAWILLGVFGLIWSFYIVYTSSLE--EDEESGLSL

Arabidopsis top hitse value%identityAlignment
AT2G30570.1 photosystem II reaction center W1.2e-3362.32Show/hide
Query:  MAAVTSAAAAVRTA-PVHSRPRTAASSAPFLLGLPALG-KKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAVATTMSSPAMALVDERLSTEGTGLPFG
        MA+ T++A+ V  A P      T A SAP +LGLP +G KKGGVRCSME    +K+        G+ A+  AA+   MS+PAMALVDER+STEGTGLPFG
Subjt:  MAAVTSAAAAVRTA-PVHSRPRTAASSAPFLLGLPALG-KKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAVATTMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL
        LSNNLL WIL GVFGLIW+F+ VYTSSLEEDEESGLSL
Subjt:  LSNNLLAWILLGVFGLIWSFYIVYTSSLEEDEESGLSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCGTCACCTCCGCCGCCGCTGCCGTGCGCACTGCTCCGGTTCACAGCCGCCCCCGGACGGCGGCTTCATCCGCCCCTTTCCTTCTCGGGTTGCCTGCG
TTGGGAAAGAAGGGAGGAGTGAGGTGTTCCATGGAAGAAGGAAAGGCAAGCAAAGAAGCAGAAAACAAATGTAGCAGCCTCGGGATGGGTGCGTCGTTGATCGCT
GCGGTGGCGACGACGATGTCGAGCCCGGCCATGGCTCTGGTGGATGAGAGACTGAGCACAGAAGGGACTGGCCTTCCATTTGGTTTGAGCAACAATCTTCTTGCT
TGGATTCTCTTAGGGGTTTTTGGTCTCATATGGTCATTCTACATCGTTTACACTTCTTCTCTTGAAGAGGATGAGGAATCGGGCTTGTCTCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCGCCGTCACCTCCGCCGCCGCTGCCGTGCGCACTGCTCCGGTTCACAGCCGCCCCCGGACGGCGGCTTCATCCGCCCCTTTCCTTCTCGGGTTGCCTGCG
TTGGGAAAGAAGGGAGGAGTGAGGTGTTCCATGGAAGAAGGAAAGGCAAGCAAAGAAGCAGAAAACAAATGTAGCAGCCTCGGGATGGGTGCGTCGTTGATCGCT
GCGGTGGCGACGACGATGTCGAGCCCGGCCATGGCTCTGGTGGATGAGAGACTGAGCACAGAAGGGACTGGCCTTCCATTTGGTTTGAGCAACAATCTTCTTGCT
TGGATTCTCTTAGGGGTTTTTGGTCTCATATGGTCATTCTACATCGTTTACACTTCTTCTCTTGAAGAGGATGAGGAATCGGGCTTGTCTCTTTAG
Protein sequenceShow/hide protein sequence
MAAVTSAAAAVRTAPVHSRPRTAASSAPFLLGLPALGKKGGVRCSMEEGKASKEAENKCSSLGMGASLIAAVATTMSSPAMALVDERLSTEGTGLPFGLSNNLLA
WILLGVFGLIWSFYIVYTSSLEEDEESGLSL