CuGenDBv2

Gene ID	Moc09g09060
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
Genome location	chr9:7473635..7476268
RNA-Seq Expression	Moc09g09060
Synteny	Moc09g09060
Gene Ontology terms	GO:0045943 - positive regulation of transcription by RNA polymerase I (biological process) GO:0005730 - nucleolus (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003724 - RNA helicase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0016787 - hydrolase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0033967.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Cucumis melo var. makuwa]

2.9e-07

40.32

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Query:  GAFVSSLDRNQEHNG-KDSMLSYQLMVARRGMQLEESYWGDPTSRRV------AAVTVAKR----VAEERGIEVGQ---KESPGGILAFLTGQEQIESTE
        G +VSSL   ++H G K   L   +M A    +L   Y+G   + R+       A++  ++     +E   I + Q   +ESPG ILAFLTGQE+IES E
Subjt:  GAFVSSLDRNQEHNG-KDSMLSYQLMVARRGMQLEESYWGDPTSRRV------AAVTVAKR----VAEERGIEVGQ---KESPGGILAFLTGQEQIESTE

Query:  NLVKNKIQKLAEGKRNSALIPTWS
        NL K  IQKL E KRN  +IP +S
Subjt:  NLVKNKIQKLAEGKRNSALIPTWS

TYK02577.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Cucumis melo var. makuwa]

2.9e-07

40.32

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Query:  GAFVSSLDRNQEHNG-KDSMLSYQLMVARRGMQLEESYWGDPTSRRV------AAVTVAKR----VAEERGIEVGQ---KESPGGILAFLTGQEQIESTE
        G +VSSL   ++H G K   L   +M A    +L   Y+G   + R+       A++  ++     +E   I + Q   +ESPG ILAFLTGQE+IES E
Subjt:  GAFVSSLDRNQEHNG-KDSMLSYQLMVARRGMQLEESYWGDPTSRRV------AAVTVAKR----VAEERGIEVGQ---KESPGGILAFLTGQEQIESTE

Query:  NLVKNKIQKLAEGKRNSALIPTWS
        NL K  IQKL E KRN  +IP +S
Subjt:  NLVKNKIQKLAEGKRNSALIPTWS

XP_008463416.1 PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Cucumis melo]

2.9e-07

40.32

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Query:  GAFVSSLDRNQEHNG-KDSMLSYQLMVARRGMQLEESYWGDPTSRRV------AAVTVAKR----VAEERGIEVGQ---KESPGGILAFLTGQEQIESTE
        G +VSSL   ++H G K   L   +M A    +L   Y+G   + R+       A++  ++     +E   I + Q   +ESPG ILAFLTGQE+IES E
Subjt:  GAFVSSLDRNQEHNG-KDSMLSYQLMVARRGMQLEESYWGDPTSRRV------AAVTVAKR----VAEERGIEVGQ---KESPGGILAFLTGQEQIESTE

Query:  NLVKNKIQKLAEGKRNSALIPTWS
        NL K  IQKL E KRN  +IP +S
Subjt:  NLVKNKIQKLAEGKRNSALIPTWS

XP_038904721.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 isoform X1 [Benincasa hispida]

5.9e-08

40.65

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Query:  GAFVSSLDRNQEHNGKDSMLSYQLMVARRGMQLEESYWGDPTSRR-------VAAVTVAKRVAEERG------IEVGQKESPGGILAFLTGQEQIESTEN
        G +VSSL   Q    K   L   +M A    +L   Y+G   + R       VA     K V++          ++  +ESPG ILAFLTGQE+IES EN
Subjt:  GAFVSSLDRNQEHNGKDSMLSYQLMVARRGMQLEESYWGDPTSRR-------VAAVTVAKRVAEERG------IEVGQKESPGGILAFLTGQEQIESTEN

Query:  LVKNKIQKLAEGKRNSALIPTWS
        L K+KIQKL E KRN  +IP +S
Subjt:  LVKNKIQKLAEGKRNSALIPTWS

XP_038904722.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 isoform X2 [Benincasa hispida]

5.9e-08

40.65

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Query:  GAFVSSLDRNQEHNGKDSMLSYQLMVARRGMQLEESYWGDPTSRR-------VAAVTVAKRVAEERG------IEVGQKESPGGILAFLTGQEQIESTEN
        G +VSSL   Q    K   L   +M A    +L   Y+G   + R       VA     K V++          ++  +ESPG ILAFLTGQE+IES EN
Subjt:  GAFVSSLDRNQEHNGKDSMLSYQLMVARRGMQLEESYWGDPTSRR-------VAAVTVAKRVAEERG------IEVGQKESPGGILAFLTGQEQIESTEN

Query:  LVKNKIQKLAEGKRNSALIPTWS
        L K+KIQKL E KRN  +IP +S
Subjt:  LVKNKIQKLAEGKRNSALIPTWS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CJ82 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10

1.4e-07

40.32

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Query:  GAFVSSLDRNQEHNG-KDSMLSYQLMVARRGMQLEESYWGDPTSRRV------AAVTVAKR----VAEERGIEVGQ---KESPGGILAFLTGQEQIESTE
        G +VSSL   ++H G K   L   +M A    +L   Y+G   + R+       A++  ++     +E   I + Q   +ESPG ILAFLTGQE+IES E
Subjt:  GAFVSSLDRNQEHNG-KDSMLSYQLMVARRGMQLEESYWGDPTSRRV------AAVTVAKR----VAEERGIEVGQ---KESPGGILAFLTGQEQIESTE

Query:  NLVKNKIQKLAEGKRNSALIPTWS
        NL K  IQKL E KRN  +IP +S
Subjt:  NLVKNKIQKLAEGKRNSALIPTWS

A0A5A7SXH3 Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10

1.4e-07

40.32

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Query:  GAFVSSLDRNQEHNG-KDSMLSYQLMVARRGMQLEESYWGDPTSRRV------AAVTVAKR----VAEERGIEVGQ---KESPGGILAFLTGQEQIESTE
        G +VSSL   ++H G K   L   +M A    +L   Y+G   + R+       A++  ++     +E   I + Q   +ESPG ILAFLTGQE+IES E
Subjt:  GAFVSSLDRNQEHNG-KDSMLSYQLMVARRGMQLEESYWGDPTSRRV------AAVTVAKR----VAEERGIEVGQ---KESPGGILAFLTGQEQIESTE

Query:  NLVKNKIQKLAEGKRNSALIPTWS
        NL K  IQKL E KRN  +IP +S
Subjt:  NLVKNKIQKLAEGKRNSALIPTWS

A0A5D3BSZ3 Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10

1.4e-07

40.32

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Query:  GAFVSSLDRNQEHNG-KDSMLSYQLMVARRGMQLEESYWGDPTSRRV------AAVTVAKR----VAEERGIEVGQ---KESPGGILAFLTGQEQIESTE
        G +VSSL   ++H G K   L   +M A    +L   Y+G   + R+       A++  ++     +E   I + Q   +ESPG ILAFLTGQE+IES E
Subjt:  GAFVSSLDRNQEHNG-KDSMLSYQLMVARRGMQLEESYWGDPTSRRV------AAVTVAKR----VAEERGIEVGQ---KESPGGILAFLTGQEQIESTE

Query:  NLVKNKIQKLAEGKRNSALIPTWS
        NL K  IQKL E KRN  +IP +S
Subjt:  NLVKNKIQKLAEGKRNSALIPTWS

A0A6J1DA28 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10

1.8e-07

65.31

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Query:  EVGQKESPGGILAFLTGQEQIESTENLVKNKIQKLAEGKRNSALIPTWS
        ++  +ESPG IL FLTGQE+IES ENLVK+KIQKL EG+RN   IP +S
Subjt:  EVGQKESPGGILAFLTGQEQIESTENLVKNKIQKLAEGKRNSALIPTWS

A0A6J1JAN7 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10

3.2e-07

39.02

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Query:  GAFVSSLDRNQEHNGKDSMLSYQLMVARRGMQLEESYWGDPTSRR-------VAAVTVAKRVAEERG------IEVGQKESPGGILAFLTGQEQIESTEN
        G + SSL   Q    K   L   +M A    +L   Y+G   + R       VA     K V++          ++  +ESPG ILAFLTGQE+IES EN
Subjt:  GAFVSSLDRNQEHNGKDSMLSYQLMVARRGMQLEESYWGDPTSRR-------VAAVTVAKRVAEERG------IEVGQKESPGGILAFLTGQEQIESTEN

Query:  LVKNKIQKLAEGKRNSALIPTWS
        L K+KIQKL E K+N  +IP +S
Subjt:  LVKNKIQKLAEGKRNSALIPTWS

SwissProt top hits

e value

%identity

Alignment

F4IE66 Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10

7.0e-04

55.56

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Query:  KESPGGILAFLTGQEQIESTENLVKNKIQKLAEGKR
        +E PG IL FLTGQ++IES E LV+ ++Q + E KR
Subjt:  KESPGGILAFLTGQEQIESTENLVKNKIQKLAEGKR

Arabidopsis top hits

e value

%identity

Alignment

AT1G26370.1 RNA helicase family protein

5.0e-05

55.56

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Query:  KESPGGILAFLTGQEQIESTENLVKNKIQKLAEGKR
        +E PG IL FLTGQ++IES E LV+ ++Q + E KR
Subjt:  KESPGGILAFLTGQEQIESTENLVKNKIQKLAEGKR

Sequences

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CDS sequence

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ATGGTAATGAGATATTTTATTCTTAGCCACTCACTTGTTTTACTTTCCCGGAATGCAGTCAAGTTATTCAGTTTTACAAATATCAGCGAAGCACTACCCAAATCAAGGAA
AGGAAAAGGGGGTGCAAACAGTTTGGGCTTCACTCGCACCAGCAACCAGAAAAATCTAGGCTTCTTCCTCGCCTCTGAAACCTTTCTCACTCGACAGCTCTCTGGAACTC
TCTCTCCTTTTGCTCTCGAAATAGCCGCCCTTCGTTATCTCAGGCATTCGATTGAGGTCGAAGTAGTTTGCCCTCGCTCTTGTTTGCCAGGAGCTTTTGTTTCTTCCCTC
GACAGGAATCAAGAACACAATGGAAAGGACTCAATGCTAAGTTATCAGCTAATGGTTGCAAGAAGAGGCATGCAATTAGAGGAGAGCTATTGGGGCGACCCAACCTCGCG
GCGTGTTGCTGCTGTAACTGTAGCCAAAAGAGTTGCTGAGGAACGTGGCATCGAGGTGGGCCAAAAGGAGAGTCCTGGTGGTATACTTGCATTTTTGACTGGTCAAGAAC
AGATAGAGTCTACGGAAAATCTTGTAAAGAATAAGATTCAGAAGTTAGCTGAAGGCAAAAGGAATTCAGCACTCATTCCCACCTGGAGTTGGTAA

mRNA sequence

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Protein sequence

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MVMRYFILSHSLVLLSRNAVKLFSFTNISEALPKSRKGKGGANSLGFTRTSNQKNLGFFLASETFLTRQLSGTLSPFALEIAALRYLRHSIEVEVVCPRSCLPGAFVSSL
DRNQEHNGKDSMLSYQLMVARRGMQLEESYWGDPTSRRVAAVTVAKRVAEERGIEVGQKESPGGILAFLTGQEQIESTENLVKNKIQKLAEGKRNSALIPTWSW

Moc09g09060 (gene) of Bitter gourd (OHB3-1) v2 genome