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Moc09g09140 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g09140
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr9:7545926..7550476
RNA-Seq ExpressionMoc09g09140
SyntenyMoc09g09140
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142775.1 protein NYNRIN-like [Momordica charantia]3.5e-2050Show/hide
Query:  GDEKSHLAHFQAYEIRHIRRSENSNTDPLAKLASAYETDL--------------------------------ARDFLEGHISVDLKEAKKMTRRAARYLL
        G  +SHL HFQAYEI  I RS+NSN D LAKLASAYETDL                                 R+FLEG+I VD +EAKKMTR+AARY L
Subjt:  GDEKSHLAHFQAYEIRHIRRSENSNTDPLAKLASAYETDL--------------------------------ARDFLEGHISVDLKEAKKMTRRAARYLL

Query:  RDGTMYRRGFFLPLLKYISKEDENTFSGRIPKSN
        RD TMYRRGF L L K I K+     SG+  K +
Subjt:  RDGTMYRRGFFLPLLKYISKEDENTFSGRIPKSN

XP_022143565.1 uncharacterized protein LOC111013434 [Momordica charantia]1.7e-2254.92Show/hide
Query:  GDEKSHLAHFQAYEIRHIRRSENSNTDPLAKLASAYETDLAR--------------------------------DFLEGHISVDLKEAKKMTRRAARYLL
        G  +SHLA+FQ YEI  I RS+NSN+D LAKLASAYETDLAR                                DFL G +  D +E KKMTR+AARYLL
Subjt:  GDEKSHLAHFQAYEIRHIRRSENSNTDPLAKLASAYETDLAR--------------------------------DFLEGHISVDLKEAKKMTRRAARYLL

Query:  RDGTMYRRGFFLPLLKYISKED
        RDGT+YRRGF LPLLK ISKED
Subjt:  RDGTMYRRGFFLPLLKYISKED

XP_022144032.1 uncharacterized protein LOC111013824 [Momordica charantia]4.4e-2327.73Show/hide
Query:  KSHLAHFQAYEIRHIRRSENSNTDPLAKLASAYETDLAR--------------------------------DFLEGHISVDLKEAKKMTRRAARYLLRDG
        +S+L  F+ YE+  + RSENSNTD LAKLASAYETDLAR                                +F++ +   D K  KKM+R+ AR++LRDG
Subjt:  KSHLAHFQAYEIRHIRRSENSNTDPLAKLASAYETDLAR--------------------------------DFLEGHISVDLKEAKKMTRRAARYLLRDG

Query:  TMYRRGFFLPLLKYISKEDEN-------------------------------------------------------------------------------
         +YRRGF LPLLK ++ ED +                                                                               
Subjt:  TMYRRGFFLPLLKYISKEDEN-------------------------------------------------------------------------------

Query:  -----------------TFSGRI------------------------PKSNGKT------------LQLEGP----TSELP----GWTLDLR--------
                         T +G++                        PK+ G+             ++L+        ELP     +   LR        
Subjt:  -----------------TFSGRI------------------------PKSNGKT------------LQLEGP----TSELP----GWTLDLR--------

Query:  -----------------------KVQKHVDTLEPGWEVPFEVKGIVRPGTYMLADLEGKLLLHPWNAEHLKRYYP
                               K+Q HV TL+P WE PFEVKGI+R GTYMLADLEG +L HPWNAEHLKRYYP
Subjt:  -----------------------KVQKHVDTLEPGWEVPFEVKGIVRPGTYMLADLEGKLLLHPWNAEHLKRYYP

XP_022156791.1 uncharacterized protein LOC111023625 [Momordica charantia]3.5e-2051.64Show/hide
Query:  GDEKSHLAHFQAYEIRHIRRSENSNTDPLAKLASAYETDLAR--------------------------------DFLEGHISVDLKEAKKMTRRAARYLL
        G  +SHLA+FQ YEIR I R + SN D LAKLAS YETDLAR                                DFL G +  D +E KKMTR+AARYLL
Subjt:  GDEKSHLAHFQAYEIRHIRRSENSNTDPLAKLASAYETDLAR--------------------------------DFLEGHISVDLKEAKKMTRRAARYLL

Query:  RDGTMYRRGFFLPLLKYISKED
        RDGT+YRRGF LPLLK+I +ED
Subjt:  RDGTMYRRGFFLPLLKYISKED

XP_022157626.1 uncharacterized protein LOC111024288 [Momordica charantia]1.9e-2153.23Show/hide
Query:  GDEKSHLAHFQAYEIRHIRRSENSNTDPLAKLASAYETDLA--------------------------------RDFLEGHISVDLKEAKKMTRRAARYLL
        G  +SHL HFQAYEI  I RS+NSN D LAKLASAY+T+LA                                R+FLEG+I ++ KEAKKM R+ ARYLL
Subjt:  GDEKSHLAHFQAYEIRHIRRSENSNTDPLAKLASAYETDLA--------------------------------RDFLEGHISVDLKEAKKMTRRAARYLL

Query:  RDGTMYRRGFFLPLLKYISKEDEN
        RD TMY+RGF LPLLK ISKEDE+
Subjt:  RDGTMYRRGFFLPLLKYISKEDEN

TrEMBL top hitse value%identityAlignment
A0A6J1CLW5 protein NYNRIN-like1.7e-2050Show/hide
Query:  GDEKSHLAHFQAYEIRHIRRSENSNTDPLAKLASAYETDL--------------------------------ARDFLEGHISVDLKEAKKMTRRAARYLL
        G  +SHL HFQAYEI  I RS+NSN D LAKLASAYETDL                                 R+FLEG+I VD +EAKKMTR+AARY L
Subjt:  GDEKSHLAHFQAYEIRHIRRSENSNTDPLAKLASAYETDL--------------------------------ARDFLEGHISVDLKEAKKMTRRAARYLL

Query:  RDGTMYRRGFFLPLLKYISKEDENTFSGRIPKSN
        RD TMYRRGF L L K I K+     SG+  K +
Subjt:  RDGTMYRRGFFLPLLKYISKEDENTFSGRIPKSN

A0A6J1CP53 Ribonuclease H8.1e-2354.92Show/hide
Query:  GDEKSHLAHFQAYEIRHIRRSENSNTDPLAKLASAYETDLAR--------------------------------DFLEGHISVDLKEAKKMTRRAARYLL
        G  +SHLA+FQ YEI  I RS+NSN+D LAKLASAYETDLAR                                DFL G +  D +E KKMTR+AARYLL
Subjt:  GDEKSHLAHFQAYEIRHIRRSENSNTDPLAKLASAYETDLAR--------------------------------DFLEGHISVDLKEAKKMTRRAARYLL

Query:  RDGTMYRRGFFLPLLKYISKED
        RDGT+YRRGF LPLLK ISKED
Subjt:  RDGTMYRRGFFLPLLKYISKED

A0A6J1CSJ1 Ribonuclease H2.1e-2327.73Show/hide
Query:  KSHLAHFQAYEIRHIRRSENSNTDPLAKLASAYETDLAR--------------------------------DFLEGHISVDLKEAKKMTRRAARYLLRDG
        +S+L  F+ YE+  + RSENSNTD LAKLASAYETDLAR                                +F++ +   D K  KKM+R+ AR++LRDG
Subjt:  KSHLAHFQAYEIRHIRRSENSNTDPLAKLASAYETDLAR--------------------------------DFLEGHISVDLKEAKKMTRRAARYLLRDG

Query:  TMYRRGFFLPLLKYISKEDEN-------------------------------------------------------------------------------
         +YRRGF LPLLK ++ ED +                                                                               
Subjt:  TMYRRGFFLPLLKYISKEDEN-------------------------------------------------------------------------------

Query:  -----------------TFSGRI------------------------PKSNGKT------------LQLEGP----TSELP----GWTLDLR--------
                         T +G++                        PK+ G+             ++L+        ELP     +   LR        
Subjt:  -----------------TFSGRI------------------------PKSNGKT------------LQLEGP----TSELP----GWTLDLR--------

Query:  -----------------------KVQKHVDTLEPGWEVPFEVKGIVRPGTYMLADLEGKLLLHPWNAEHLKRYYP
                               K+Q HV TL+P WE PFEVKGI+R GTYMLADLEG +L HPWNAEHLKRYYP
Subjt:  -----------------------KVQKHVDTLEPGWEVPFEVKGIVRPGTYMLADLEGKLLLHPWNAEHLKRYYP

A0A6J1DW17 Ribonuclease H1.7e-2051.64Show/hide
Query:  GDEKSHLAHFQAYEIRHIRRSENSNTDPLAKLASAYETDLAR--------------------------------DFLEGHISVDLKEAKKMTRRAARYLL
        G  +SHLA+FQ YEIR I R + SN D LAKLAS YETDLAR                                DFL G +  D +E KKMTR+AARYLL
Subjt:  GDEKSHLAHFQAYEIRHIRRSENSNTDPLAKLASAYETDLAR--------------------------------DFLEGHISVDLKEAKKMTRRAARYLL

Query:  RDGTMYRRGFFLPLLKYISKED
        RDGT+YRRGF LPLLK+I +ED
Subjt:  RDGTMYRRGFFLPLLKYISKED

A0A6J1DYR5 uncharacterized protein LOC1110242889.0e-2253.23Show/hide
Query:  GDEKSHLAHFQAYEIRHIRRSENSNTDPLAKLASAYETDLA--------------------------------RDFLEGHISVDLKEAKKMTRRAARYLL
        G  +SHL HFQAYEI  I RS+NSN D LAKLASAY+T+LA                                R+FLEG+I ++ KEAKKM R+ ARYLL
Subjt:  GDEKSHLAHFQAYEIRHIRRSENSNTDPLAKLASAYETDLA--------------------------------RDFLEGHISVDLKEAKKMTRRAARYLL

Query:  RDGTMYRRGFFLPLLKYISKEDEN
        RD TMY+RGF LPLLK ISKEDE+
Subjt:  RDGTMYRRGFFLPLLKYISKEDEN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAGGCCCAGCTACTTTACCTTCCGAGGACGAGCTGCCTGAAGGCGACGAGAAGTCGCACCTCGCCCACTTCCAGGCTTACGAAATTAGACACATTCGAAGG
TCAGAGAACTCCAATACCGATCCTTTAGCAAAATTGGCATCTGCCTACGAGACCGACCTGGCGAGAGACTTCCTAGAAGGACATATCTCAGTGGACCTGAAGGAA
GCCAAGAAGATGACACGGAGAGCAGCTCGGTACCTGCTCCGAGATGGAACAATGTACCGACGAGGGTTCTTCTTACCCCTCCTTAAGTACATCTCCAAGGAAGAC
GAGAATACGTTCTCAGGGAGAATACCAAAATCGAATGGCAAGACTCTACAACTCGAGGGTCCAACCTCGGAGCTTCCAGGTTGGACACTTGATCTTCGTAAAGTG
CAGAAGCACGTTGATACGTTGGAACCTGGTTGGGAGGTGCCATTCGAAGTCAAAGGCATAGTTCGACCTGGGACATATATGTTGGCCGATCTCGAAGGAAAGTTA
CTTCTACATCCGTGGAACGCAGAACACTTGAAGCGGTATTATCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCAGGCCCAGCTACTTTACCTTCCGAGGACGAGCTGCCTGAAGGCGACGAGAAGTCGCACCTCGCCCACTTCCAGGCTTACGAAATTAGACACATTCGAAGG
TCAGAGAACTCCAATACCGATCCTTTAGCAAAATTGGCATCTGCCTACGAGACCGACCTGGCGAGAGACTTCCTAGAAGGACATATCTCAGTGGACCTGAAGGAA
GCCAAGAAGATGACACGGAGAGCAGCTCGGTACCTGCTCCGAGATGGAACAATGTACCGACGAGGGTTCTTCTTACCCCTCCTTAAGTACATCTCCAAGGAAGAC
GAGAATACGTTCTCAGGGAGAATACCAAAATCGAATGGCAAGACTCTACAACTCGAGGGTCCAACCTCGGAGCTTCCAGGTTGGACACTTGATCTTCGTAAAGTG
CAGAAGCACGTTGATACGTTGGAACCTGGTTGGGAGGTGCCATTCGAAGTCAAAGGCATAGTTCGACCTGGGACATATATGTTGGCCGATCTCGAAGGAAAGTTA
CTTCTACATCCGTGGAACGCAGAACACTTGAAGCGGTATTATCCTTGA
Protein sequenceShow/hide protein sequence
MPGPATLPSEDELPEGDEKSHLAHFQAYEIRHIRRSENSNTDPLAKLASAYETDLARDFLEGHISVDLKEAKKMTRRAARYLLRDGTMYRRGFFLPLLKYISKED
ENTFSGRIPKSNGKTLQLEGPTSELPGWTLDLRKVQKHVDTLEPGWEVPFEVKGIVRPGTYMLADLEGKLLLHPWNAEHLKRYYP