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Moc09g09650 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g09650
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionU11/U12 small nuclear ribonucleoprotein 48 kDa protein
Genome locationchr9:8114922..8121696
RNA-Seq ExpressionMoc09g09650
SyntenyMoc09g09650
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144020.1 (-)-germacrene D synthase-like [Momordica charantia]8.3e-4053.23Show/hide
Query:  AIIPSLELTLYALVKYSSQLNDLQLLHDNHNEHAGRTTLDKEVAMALRVWELIDYLEIIGITTQCRILGSDGSSLALVASDYYDYRELVGLSWKAELHVM
        AI+PSLEL LYALVKYSSQLNDLQLLH NH+EHA            + +W               RILGS+ SSL LV SDYYD +ELVGLSWKAEL VM
Subjt:  AIIPSLELTLYALVKYSSQLNDLQLLHDNHNEHAGRTTLDKEVAMALRVWELIDYLEIIGITTQCRILGSDGSSLALVASDYYDYRELVGLSWKAELHVM

Query:  NYAGGSPLLTDKECGRLEWRISCACTGTEIPRRSHYSVSDLILRVKPGSFYSLKAHHQEGGYRSAANLEEAVKKAVIAAWSLEVVGVRGWRSYRSLASPE
        NYAGGSPLLTDKE                                             EGGY  AANLEEAV+KAV  AWS EV GVRGWRSYRSLASPE
Subjt:  NYAGGSPLLTDKECGRLEWRISCACTGTEIPRRSHYSVSDLILRVKPGSFYSLKAHHQEGGYRSAANLEEAVKKAVIAAWSLEVVGVRGWRSYRSLASPE

Query:  V
        +
Subjt:  V
XP_022151686.1 U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Momordica charantia]4.5e-3086.05Show/hide
Query:  AIIPSLELTLYALVKYSSQLNDLQLLHDNHNEHAGRTTLDKEVAMALRVWELIDYLEIIGITTQCRILGSDGSSLALVASDYYDYR
        AI+PSLEL +YALVKYSSQLNDLQLL  NH+  AGRTT DK VA+ALRV ELIDYLEIIGITTQCRILGSDGSSLALVASDYYDYR
Subjt:  AIIPSLELTLYALVKYSSQLNDLQLLHDNHNEHAGRTTLDKEVAMALRVWELIDYLEIIGITTQCRILGSDGSSLALVASDYYDYR
TrEMBL top hitse value%identityAlignment
A0A6J1CQG9 (-)-germacrene D synthase-like4.0e-4053.23Show/hide
Query:  AIIPSLELTLYALVKYSSQLNDLQLLHDNHNEHAGRTTLDKEVAMALRVWELIDYLEIIGITTQCRILGSDGSSLALVASDYYDYRELVGLSWKAELHVM
        AI+PSLEL LYALVKYSSQLNDLQLLH NH+EHA            + +W               RILGS+ SSL LV SDYYD +ELVGLSWKAEL VM
Subjt:  AIIPSLELTLYALVKYSSQLNDLQLLHDNHNEHAGRTTLDKEVAMALRVWELIDYLEIIGITTQCRILGSDGSSLALVASDYYDYRELVGLSWKAELHVM

Query:  NYAGGSPLLTDKECGRLEWRISCACTGTEIPRRSHYSVSDLILRVKPGSFYSLKAHHQEGGYRSAANLEEAVKKAVIAAWSLEVVGVRGWRSYRSLASPE
        NYAGGSPLLTDKE                                             EGGY  AANLEEAV+KAV  AWS EV GVRGWRSYRSLASPE
Subjt:  NYAGGSPLLTDKECGRLEWRISCACTGTEIPRRSHYSVSDLILRVKPGSFYSLKAHHQEGGYRSAANLEEAVKKAVIAAWSLEVVGVRGWRSYRSLASPE

Query:  V
        +
Subjt:  V
A0A6J1DFF2 U11/U12 small nuclear ribonucleoprotein 48 kDa protein2.2e-3086.05Show/hide
Query:  AIIPSLELTLYALVKYSSQLNDLQLLHDNHNEHAGRTTLDKEVAMALRVWELIDYLEIIGITTQCRILGSDGSSLALVASDYYDYR
        AI+PSLEL +YALVKYSSQLNDLQLL  NH+  AGRTT DK VA+ALRV ELIDYLEIIGITTQCRILGSDGSSLALVASDYYDYR
Subjt:  AIIPSLELTLYALVKYSSQLNDLQLLHDNHNEHAGRTTLDKEVAMALRVWELIDYLEIIGITTQCRILGSDGSSLALVASDYYDYR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGAAATCTGATTTTCGTCGCCAAAGGCCTACAGCAATGAAATTTGAATTTTCGTCGCAAAAGGTCTATGACGACGAAAATCTGATTTTCGTTGCCAAAAGCCT
ACAGCGACGAAATCTGATTTTCGTCGCCAAAGCCATCATACCTTCATTAGAACTTACACTTTATGCTTTAGTGAAGTACAGTTCTCAGTTGAATGACCTACAGCTCCTGC
ATGATAATCACAACGAACATGCGGGTCGTACCACTTTGGATAAGGAGGTTGCAATGGCTCTACGGGTATGGGAGCTAATAGATTACCTTGAAATAATTGGGATAACAACT
CAGTGTAGGATATTGGGATCGGATGGAAGCTCTCTCGCTTTAGTTGCCTCCGACTACTATGATTATCGGGAGCTTGTTGGCCTTTCTTGGAAAGCTGAGCTTCATGTGAT
GAATTATGCTGGGGGAAGCCCTCTATTGACTGACAAGGAGTGTGGTCGACTTGAGTGGAGAATTTCATGCGCCTGCACGGGAACCGAAATTCCACGAAGGTCACACTACT
CAGTCTCCGATCTAATCTTAAGGGTAAAGCCTGGATCTTTTTACTCACTTAAAGCACACCATCAGGAAGGAGGTTACCGTAGTGCAGCGAACTTGGAAGAAGCTGTGAAG
AAGGCTGTTATTGCTGCGTGGTCGCTGGAGGTCGTTGGAGTTCGTGGTTGGAGGTCTTACCGTTCGCTTGCATCGCCTGAGGTAGTCGTGGTTATTGGTGGACCTGTTGC
AAGCCTGCAAGGGACTAATGCAGTGGCCTACAGCGACGTTTATTTGTGTCGAGGAGATAATTCGACCTCTCGCCTAGGCCCAAATCTGATATGGGAGCCAACGACGAGCC
AACAACTAAGGAAGTCTGACTATCCTAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGACGAAATCTGATTTTCGTCGCCAAAGGCCTACAGCAATGAAATTTGAATTTTCGTCGCAAAAGGTCTATGACGACGAAAATCTGATTTTCGTTGCCAAAAGCCT
ACAGCGACGAAATCTGATTTTCGTCGCCAAAGCCATCATACCTTCATTAGAACTTACACTTTATGCTTTAGTGAAGTACAGTTCTCAGTTGAATGACCTACAGCTCCTGC
ATGATAATCACAACGAACATGCGGGTCGTACCACTTTGGATAAGGAGGTTGCAATGGCTCTACGGGTATGGGAGCTAATAGATTACCTTGAAATAATTGGGATAACAACT
CAGTGTAGGATATTGGGATCGGATGGAAGCTCTCTCGCTTTAGTTGCCTCCGACTACTATGATTATCGGGAGCTTGTTGGCCTTTCTTGGAAAGCTGAGCTTCATGTGAT
GAATTATGCTGGGGGAAGCCCTCTATTGACTGACAAGGAGTGTGGTCGACTTGAGTGGAGAATTTCATGCGCCTGCACGGGAACCGAAATTCCACGAAGGTCACACTACT
CAGTCTCCGATCTAATCTTAAGGGTAAAGCCTGGATCTTTTTACTCACTTAAAGCACACCATCAGGAAGGAGGTTACCGTAGTGCAGCGAACTTGGAAGAAGCTGTGAAG
AAGGCTGTTATTGCTGCGTGGTCGCTGGAGGTCGTTGGAGTTCGTGGTTGGAGGTCTTACCGTTCGCTTGCATCGCCTGAGGTAGTCGTGGTTATTGGTGGACCTGTTGC
AAGCCTGCAAGGGACTAATGCAGTGGCCTACAGCGACGTTTATTTGTGTCGAGGAGATAATTCGACCTCTCGCCTAGGCCCAAATCTGATATGGGAGCCAACGACGAGCC
AACAACTAAGGAAGTCTGACTATCCTAGATGA
Protein sequenceShow/hide protein sequence
MATKSDFRRQRPTAMKFEFSSQKVYDDENLIFVAKSLQRRNLIFVAKAIIPSLELTLYALVKYSSQLNDLQLLHDNHNEHAGRTTLDKEVAMALRVWELIDYLEIIGITT
QCRILGSDGSSLALVASDYYDYRELVGLSWKAELHVMNYAGGSPLLTDKECGRLEWRISCACTGTEIPRRSHYSVSDLILRVKPGSFYSLKAHHQEGGYRSAANLEEAVK
KAVIAAWSLEVVGVRGWRSYRSLASPEVVVVIGGPVASLQGTNAVAYSDVYLCRGDNSTSRLGPNLIWEPTTSQQLRKSDYPR