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Moc09g09900 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc09g09900
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNase H domain-containing protein
Genome locationchr9:8365663..8371281
RNA-Seq ExpressionMoc09g09900
SyntenyMoc09g09900
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_010682926.1 PREDICTED: uncharacterized protein LOC104897688 [Beta vulgaris subsp. vulgaris]1.4e-1035.25Show/hide
Query:  AMC-FITHVSDVALAECLAAQEGARLAIEASLIPFQIETDSNSVFNLLRTDCEDESEIGVFASSIR-HTVSSLHIGGRFSFVNRKGNSGAHTLARMCMVS
        AMC  +  ++DVALAE L+A+ G +LA+EA  +   +E D+  ++  L+    + S+ G     IR + V   HI   FS V R GNS AH LA++   S
Subjt:  AMC-FITHVSDVALAECLAAQEGARLAIEASLIPFQIETDSNSVFNLLRTDCEDESEIGVFASSIR-HTVSSLHIGGRFSFVNRKGNSGAHTLARMCMVS

Query:  ESFRIWVEEWPPDLSEVIATDR
        E   +W+E++P +++ +++ D+
Subjt:  ESFRIWVEEWPPDLSEVIATDR

XP_021748387.1 uncharacterized protein LOC110714206 [Chenopodium quinoa]2.0e-0928.57Show/hide
Query:  VPNQIYHPAARPDPPKNDMIRRSPQTKSTYCRLDMFPICRPTSIFLQLFEEAMCFITHVS------DVALAECLAAQEGARLAIEASLIPFQIETDSNSV
        +PN+  HP +R   P + + + +        RL +  I R         EE +  +T+ S      DVA+ E +A +   ++A+EA    F +ETD+  +
Subjt:  VPNQIYHPAARPDPPKNDMIRRSPQTKSTYCRLDMFPICRPTSIFLQLFEEAMCFITHVS------DVALAECLAAQEGARLAIEASLIPFQIETDSNSV

Query:  FNLLRTDCEDESEIGVFASSIRHTVSSLHIGGRFSFVNRKGNSGAHTLARMCMVSESFRIWVEEWPPDLSEVIATDRQSILI
        F+ L+         G     I  T+S       FSFV R  N  AH+LA++      +R+W+EE+PP++  V+ TD ++++I
Subjt:  FNLLRTDCEDESEIGVFASSIRHTVSSLHIGGRFSFVNRKGNSGAHTLARMCMVSESFRIWVEEWPPDLSEVIATDRQSILI

XP_022135942.1 uncharacterized protein LOC111007775 [Momordica charantia]3.1e-5084.68Show/hide
Query:  AMCFITHVSDVALAECLAAQEGARLAIEASLIPFQIETDSNSVFNLLRTDCEDESEIGVFASSIRHTVSSLHIGGRFSFVNRKGNSGAHTLARMCMVSES
        AMCFITHVSDV LAECLAAQEG  LAIEA LIPFQIETDS+ VFNLLRTDCEDESEIGV ASSIRH VSSLHIGG FSFVNR+GNSGAHTLARM MVSES
Subjt:  AMCFITHVSDVALAECLAAQEGARLAIEASLIPFQIETDSNSVFNLLRTDCEDESEIGVFASSIRHTVSSLHIGGRFSFVNRKGNSGAHTLARMCMVSES

Query:  FRIWVEEWPPDLSEVIATDRQSIL
        F +WVEEW  DLSEVIA DRQ+++
Subjt:  FRIWVEEWPPDLSEVIATDRQSIL

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]9.8e-1236.07Show/hide
Query:  QLFEEAMCFITHVSDVALAECLAAQEGARLAIEASLIPFQIETDSNSVFNLLRTDCEDESEIG-VFASSIRHTVSSLHIGGRFSFVNRKGNSGAHTLARM
        Q+   A  ++ ++  V +AE + A EG +LA +  + P  +ETDS+ +FNL     ED SE G +   +      SLH    F+FV R+GN  AH LAR 
Subjt:  QLFEEAMCFITHVSDVALAECLAAQEGARLAIEASLIPFQIETDSNSVFNLLRTDCEDESEIG-VFASSIRHTVSSLHIGGRFSFVNRKGNSGAHTLARM

Query:  CMVSESFRIWVEEWPPDLSEVI
         ++   F IW+E+WP +L   +
Subjt:  CMVSESFRIWVEEWPPDLSEVI

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]5.2e-2148.36Show/hide
Query:  AMCFITHVSDVALAECLAAQEGARLAIEASLIPFQIETDSNSVFNLLRTDCEDESEIGVFASSIRHTVSSLHIGGRFSFVNRKGNSGAHTLARMCMVSES
        A+  +   SDV   E  A  EG  LA+EA  I FQIETDS  +FNLL TDC D+SE+GV  S I+  +SS      FSF +R GN+ AH LA++ + S  
Subjt:  AMCFITHVSDVALAECLAAQEGARLAIEASLIPFQIETDSNSVFNLLRTDCEDESEIGVFASSIRHTVSSLHIGGRFSFVNRKGNSGAHTLARMCMVSES

Query:  FRIWVEEWPPDLSEVIATDRQS
         +IWVEEWP ++S V+A D +S
Subjt:  FRIWVEEWPPDLSEVIATDRQS

TrEMBL top hitse value%identityAlignment
A0A6J1C467 uncharacterized protein LOC1110077751.5e-5084.68Show/hide
Query:  AMCFITHVSDVALAECLAAQEGARLAIEASLIPFQIETDSNSVFNLLRTDCEDESEIGVFASSIRHTVSSLHIGGRFSFVNRKGNSGAHTLARMCMVSES
        AMCFITHVSDV LAECLAAQEG  LAIEA LIPFQIETDS+ VFNLLRTDCEDESEIGV ASSIRH VSSLHIGG FSFVNR+GNSGAHTLARM MVSES
Subjt:  AMCFITHVSDVALAECLAAQEGARLAIEASLIPFQIETDSNSVFNLLRTDCEDESEIGVFASSIRHTVSSLHIGGRFSFVNRKGNSGAHTLARMCMVSES

Query:  FRIWVEEWPPDLSEVIATDRQSIL
        F +WVEEW  DLSEVIA DRQ+++
Subjt:  FRIWVEEWPPDLSEVIATDRQSIL

A0A6J1CIF1 uncharacterized protein LOC1110112374.7e-1236.07Show/hide
Query:  QLFEEAMCFITHVSDVALAECLAAQEGARLAIEASLIPFQIETDSNSVFNLLRTDCEDESEIG-VFASSIRHTVSSLHIGGRFSFVNRKGNSGAHTLARM
        Q+   A  ++ ++  V +AE + A EG +LA +  + P  +ETDS+ +FNL     ED SE G +   +      SLH    F+FV R+GN  AH LAR 
Subjt:  QLFEEAMCFITHVSDVALAECLAAQEGARLAIEASLIPFQIETDSNSVFNLLRTDCEDESEIG-VFASSIRHTVSSLHIGGRFSFVNRKGNSGAHTLARM

Query:  CMVSESFRIWVEEWPPDLSEVI
         ++   F IW+E+WP +L   +
Subjt:  CMVSESFRIWVEEWPPDLSEVI

A0A6J1DBJ7 uncharacterized protein LOC1110189732.5e-2148.36Show/hide
Query:  AMCFITHVSDVALAECLAAQEGARLAIEASLIPFQIETDSNSVFNLLRTDCEDESEIGVFASSIRHTVSSLHIGGRFSFVNRKGNSGAHTLARMCMVSES
        A+  +   SDV   E  A  EG  LA+EA  I FQIETDS  +FNLL TDC D+SE+GV  S I+  +SS      FSF +R GN+ AH LA++ + S  
Subjt:  AMCFITHVSDVALAECLAAQEGARLAIEASLIPFQIETDSNSVFNLLRTDCEDESEIGVFASSIRHTVSSLHIGGRFSFVNRKGNSGAHTLARMCMVSES

Query:  FRIWVEEWPPDLSEVIATDRQS
         +IWVEEWP ++S V+A D +S
Subjt:  FRIWVEEWPPDLSEVIATDRQS

A0A803LHG6 Uncharacterized protein3.2e-0830.09Show/hide
Query:  DVALAECLAAQEGARLAIEASLIPFQIETDSNSVFNLLRTDCEDESEIGVFASSIRHTVSSLHIGGRFSFVNRKGNSGAHTLARMCMVSESFRIWVEEWP
        DV + E +A +   ++A+E+  +   +ETD+  + + L+    D++  G+    I    SS H    F FV R+GN  AH+LA++    ++ R+W+EE+P
Subjt:  DVALAECLAAQEGARLAIEASLIPFQIETDSNSVFNLLRTDCEDESEIGVFASSIRHTVSSLHIGGRFSFVNRKGNSGAHTLARMCMVSESFRIWVEEWP

Query:  PDLSEVIATDRQS
          + E++  D  S
Subjt:  PDLSEVIATDRQS

A0A803LYX2 Uncharacterized protein1.2e-0733.91Show/hide
Query:  DVALAECLAAQEGARLAIEASLIPFQIETDSNSVFNLLRTDCEDESEIGVFASSIRHTVSSLHIGGRFSFVNRKGNSGAHTLARMCMVSESFRIWVEEWP
        DV +AE L  +    +AI++      +ETDS  + N L   C   +  G   + I   +SS  +   FSFV R  N  AH LA++C   +SFR+WV+E P
Subjt:  DVALAECLAAQEGARLAIEASLIPFQIETDSNSVFNLLRTDCEDESEIGVFASSIRHTVSSLHIGGRFSFVNRKGNSGAHTLARMCMVSESFRIWVEEWP

Query:  PDLSEVIATDRQSIL
          ++EV+  D   ++
Subjt:  PDLSEVIATDRQSIL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTCATCGTTCAACAATGTCGCCGGAGAGGCCACCAGGGAGGCGCAAGAGCTCGGGATGGAAGCAGCGGACGGCAATCGAAAGGGACCTTCACTCGTTGAATTCCT
AGCGGAGACGCCAAAAACTGGAGTCCCCACCTTCTTCCCACATCTTGGTCTCACGCAACTTCATACGCCCCACAGCCATCGTCTTCCTAACGAAGCAAATCCGCAAGCCG
CCATCTTGCCACTCACCTTCAAGGCCACCATCTCGTCTTGTTGCTCACCTCATGAAGCAGATTCGTGTGTTGCTCACCTTCATGCCGCCGTCCACGAACCAAAACCAAAC
CTGTCGCCACCGCACCCAACCGCCGCCACCCTCCCCGTTGGCCGCAACACGTACCGTATCTGCTTGATGTGCCACGTCCCAAACCAAATCTATCATCCCGCCGCCCGACC
AGATCCGCCCAAGAACGATATGATCCGTCGGTCGCCTCAGACCAAATCCACCTACTGCCGCCTTGATATGTTTCCGATCTGCCGCCCAACTTCCATCTTCTTGCAACTGT
TCGAGGAAGCTATGTGCTTTATAACCCATGTGTCTGATGTTGCTTTGGCAGAATGTTTGGCTGCCCAAGAGGGTGCCCGTCTAGCCATAGAAGCGAGCCTCATTCCTTTT
CAGATTGAGACTGATTCCAACTCGGTTTTTAACTTGCTGCGGACGGACTGTGAAGATGAATCGGAGATTGGTGTTTTTGCTTCAAGTATTCGACACACTGTCTCTTCTTT
GCATATTGGAGGTAGGTTCAGTTTCGTTAATCGCAAAGGAAACTCTGGCGCCCATACGTTGGCTCGGATGTGCATGGTTTCCGAGTCCTTCCGCATCTGGGTTGAGGAGT
GGCCGCCAGATCTTTCTGAAGTTATTGCTACAGATCGTCAAAGTATTTTAATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGTCATCGTTCAACAATGTCGCCGGAGAGGCCACCAGGGAGGCGCAAGAGCTCGGGATGGAAGCAGCGGACGGCAATCGAAAGGGACCTTCACTCGTTGAATTCCT
AGCGGAGACGCCAAAAACTGGAGTCCCCACCTTCTTCCCACATCTTGGTCTCACGCAACTTCATACGCCCCACAGCCATCGTCTTCCTAACGAAGCAAATCCGCAAGCCG
CCATCTTGCCACTCACCTTCAAGGCCACCATCTCGTCTTGTTGCTCACCTCATGAAGCAGATTCGTGTGTTGCTCACCTTCATGCCGCCGTCCACGAACCAAAACCAAAC
CTGTCGCCACCGCACCCAACCGCCGCCACCCTCCCCGTTGGCCGCAACACGTACCGTATCTGCTTGATGTGCCACGTCCCAAACCAAATCTATCATCCCGCCGCCCGACC
AGATCCGCCCAAGAACGATATGATCCGTCGGTCGCCTCAGACCAAATCCACCTACTGCCGCCTTGATATGTTTCCGATCTGCCGCCCAACTTCCATCTTCTTGCAACTGT
TCGAGGAAGCTATGTGCTTTATAACCCATGTGTCTGATGTTGCTTTGGCAGAATGTTTGGCTGCCCAAGAGGGTGCCCGTCTAGCCATAGAAGCGAGCCTCATTCCTTTT
CAGATTGAGACTGATTCCAACTCGGTTTTTAACTTGCTGCGGACGGACTGTGAAGATGAATCGGAGATTGGTGTTTTTGCTTCAAGTATTCGACACACTGTCTCTTCTTT
GCATATTGGAGGTAGGTTCAGTTTCGTTAATCGCAAAGGAAACTCTGGCGCCCATACGTTGGCTCGGATGTGCATGGTTTCCGAGTCCTTCCGCATCTGGGTTGAGGAGT
GGCCGCCAGATCTTTCTGAAGTTATTGCTACAGATCGTCAAAGTATTTTAATTTAA
Protein sequenceShow/hide protein sequence
MLSSFNNVAGEATREAQELGMEAADGNRKGPSLVEFLAETPKTGVPTFFPHLGLTQLHTPHSHRLPNEANPQAAILPLTFKATISSCCSPHEADSCVAHLHAAVHEPKPN
LSPPHPTAATLPVGRNTYRICLMCHVPNQIYHPAARPDPPKNDMIRRSPQTKSTYCRLDMFPICRPTSIFLQLFEEAMCFITHVSDVALAECLAAQEGARLAIEASLIPF
QIETDSNSVFNLLRTDCEDESEIGVFASSIRHTVSSLHIGGRFSFVNRKGNSGAHTLARMCMVSESFRIWVEEWPPDLSEVIATDRQSILI